Wall clock time and date at job start Tue Mar 31 2020 17:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50699 * 119.99932 * 2 1 4 4 C 1.33112 * 119.99884 * 180.02562 * 2 1 3 5 5 F 1.35102 * 119.99891 * 185.64713 * 4 2 1 6 6 C 1.47297 * 120.00218 * 5.64145 * 4 2 1 7 7 O 1.21603 * 119.99960 * 354.79698 * 6 4 2 8 8 N 1.34779 * 120.00183 * 174.80248 * 6 4 2 9 9 C 1.46497 * 120.00174 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.41813 * 36.02889 * 9 8 6 11 11 C 1.54732 * 110.48161 * 158.65736 * 9 8 6 12 12 C 1.53510 * 101.50921 * 94.40597 * 11 9 8 13 13 C 1.53024 * 115.31134 * 254.56212 * 12 11 9 14 14 N 1.47764 * 85.83178 * 266.36317 * 13 12 11 15 15 C 1.36930 * 134.41539 * 155.99097 * 14 13 12 16 16 H 1.08003 * 119.99761 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00168 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00111 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47069 * 59.99516 * 19 17 15 21 21 H 1.48494 * 109.47108 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46917 * 299.99820 * 19 17 15 23 23 C 1.47755 * 91.17119 * 336.02332 * 14 13 12 24 24 N 1.46161 * 106.64892 * 24.85504 * 12 11 9 25 25 C 1.37272 * 142.21201 * 163.63417 * 24 12 11 26 26 C 1.34519 * 106.91831 * 180.11982 * 25 24 12 27 27 N 1.33980 * 108.04483 * 359.97438 * 26 25 24 28 28 C 1.30859 * 109.34928 * 359.95929 * 27 26 25 29 29 H 1.09008 * 109.46904 * 238.53330 * 1 2 3 30 30 H 1.09002 * 109.47398 * 358.53318 * 1 2 3 31 31 H 1.08995 * 109.47504 * 118.53185 * 1 2 3 32 32 H 1.08998 * 109.46954 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47250 * 300.00880 * 3 2 1 34 34 H 1.09001 * 109.46999 * 60.00653 * 3 2 1 35 35 H 0.96999 * 119.99699 * 0.02562 * 8 6 4 36 36 H 1.08998 * 111.00821 * 336.35515 * 11 9 8 37 37 H 1.08999 * 111.02868 * 212.46871 * 11 9 8 38 38 H 1.08990 * 113.81665 * 20.58890 * 13 12 11 39 39 H 1.09008 * 113.81331 * 152.13786 * 13 12 11 40 40 H 0.96994 * 119.99954 * 180.02562 * 18 17 15 41 41 H 1.08995 * 113.81838 * 269.74993 * 23 14 13 42 42 H 1.09004 * 113.81691 * 138.20115 * 23 14 13 43 43 H 1.07999 * 126.54009 * 0.09686 * 25 24 12 44 44 H 1.07997 * 125.97770 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1528 -0.0005 5 9 3.5186 -1.1557 0.1146 6 6 1.4414 -2.4253 -0.1265 7 8 0.2254 -2.4296 -0.1348 8 7 2.1202 -3.5849 -0.2325 9 6 1.3930 -4.8504 -0.3583 10 1 0.4913 -4.7131 -0.9550 11 6 2.3000 -5.9359 -0.9856 12 6 2.8571 -6.6298 0.2653 13 6 4.3148 -6.3051 0.5989 14 7 4.6496 -7.5181 -0.1757 15 6 5.7618 -7.9491 -0.8481 16 1 6.6483 -7.3329 -0.8764 17 6 5.7500 -9.1782 -1.4933 18 7 4.6698 -9.9294 -1.4584 19 14 7.2675 -9.7665 -2.4100 20 1 8.4082 -9.8685 -1.4647 21 1 6.9989 -11.0989 -3.0081 22 1 7.6016 -8.7994 -3.4864 23 6 3.3041 -8.0796 0.0645 24 7 1.8896 -6.4016 1.3368 25 6 1.5235 -6.8500 2.5815 26 6 0.4697 -6.1096 2.9700 27 7 0.1965 -5.2327 1.9946 28 6 1.0439 -5.3997 1.0115 29 1 -0.3633 -0.5365 0.8766 30 1 -0.3634 1.0273 0.0263 31 1 -0.3634 -0.4908 -0.9028 32 1 3.3321 1.1059 -0.0005 33 1 1.9971 1.8767 -0.8899 34 1 1.9972 1.8766 0.8901 35 1 3.0901 -3.5814 -0.2254 36 1 3.1006 -5.4851 -1.5719 37 1 1.7174 -6.6302 -1.5911 38 1 4.6745 -5.3810 0.1467 39 1 4.5509 -6.3817 1.6604 40 1 4.6616 -10.7883 -1.9089 41 1 3.2362 -8.6897 0.9651 42 1 2.8645 -8.5586 -0.8104 43 1 1.9920 -7.6456 3.1418 44 1 -0.0624 -6.2048 3.9049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101623070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:01 Heat of formation + Delta-G solvation = 72.463342 kcal Electronic energy + Delta-G solvation = -29354.011360 eV Core-core repulsion = 25224.958230 eV Total energy + Delta-G solvation = -4129.053131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 27.03 seconds Orbital eigenvalues (eV) -49.00302 -42.32569 -39.76008 -38.61921 -36.12951 -34.95769 -33.31340 -31.85189 -30.85583 -28.39821 -28.20111 -27.73074 -27.11204 -25.38455 -24.51522 -22.45791 -21.68568 -21.25532 -19.87601 -19.29258 -18.70049 -18.08735 -17.17143 -16.62508 -16.16022 -15.83949 -15.63932 -15.01882 -14.78892 -14.70404 -14.33835 -14.17161 -14.03028 -13.83087 -13.63225 -13.32365 -13.13983 -12.93223 -12.86679 -12.62208 -12.47469 -12.46082 -12.14761 -11.90694 -11.89125 -11.32984 -11.26178 -11.04184 -10.86132 -10.63221 -10.28269 -9.84421 -9.82840 -9.56236 -9.40267 -9.07398 -9.00306 -8.94243 -8.10363 -7.20747 -6.00388 -3.35793 0.97110 2.24637 2.87516 2.96307 3.09593 3.27551 3.33021 3.33478 3.54700 4.07752 4.12843 4.26100 4.43961 4.50943 4.64785 4.73256 4.79053 4.96275 4.99165 5.20161 5.26703 5.36573 5.42553 5.51919 5.59139 5.64483 5.67769 5.75340 5.80204 5.85344 5.96714 5.99579 6.03214 6.10540 6.18726 6.30293 6.34112 6.73142 6.76266 6.88410 7.16176 7.20583 7.32626 7.45991 7.71136 8.00238 8.46477 8.79167 9.45800 10.25823 11.16491 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.003467 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.868864 B = 8073.422978 C = 9477.514383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.073 4.073 3 C -0.127 4.127 4 C -0.024 4.024 5 F -0.138 7.138 6 C 0.550 3.450 7 O -0.504 6.504 8 N -0.710 5.710 9 C 0.229 3.771 10 H 0.117 0.883 11 C -0.096 4.096 12 C 0.097 3.903 13 C 0.124 3.876 14 N -0.598 5.598 15 C -0.232 4.232 16 H 0.085 0.915 17 C 0.000 4.000 18 N -0.919 5.919 19 Si 0.917 3.083 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.282 1.282 23 C 0.173 3.827 24 N -0.449 5.449 25 C -0.022 4.022 26 C -0.037 4.037 27 N -0.467 5.467 28 C 0.162 3.838 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.406 0.594 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.258 0.742 41 H 0.035 0.965 42 H 0.087 0.913 43 H 0.168 0.832 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 16.341 2.489 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.076 4.076 3 C -0.184 4.184 4 C -0.046 4.046 5 F -0.117 7.117 6 C 0.337 3.663 7 O -0.380 6.380 8 N -0.362 5.362 9 C 0.122 3.878 10 H 0.135 0.865 11 C -0.134 4.134 12 C 0.012 3.988 13 C -0.003 4.003 14 N -0.325 5.325 15 C -0.359 4.359 16 H 0.102 0.898 17 C -0.198 4.198 18 N -0.564 5.564 19 Si 0.746 3.254 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.208 1.208 23 C 0.047 3.953 24 N -0.131 5.131 25 C -0.156 4.156 26 C -0.186 4.186 27 N -0.186 5.186 28 C -0.102 4.102 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.242 0.758 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.185 0.815 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -7.312 16.470 2.276 18.164 hybrid contribution 2.378 -1.283 0.039 2.702 sum -4.933 15.187 2.315 16.136 Atomic orbital electron populations 1.20916 0.88744 1.01792 1.04863 1.22733 0.98118 0.93595 0.93174 1.20944 1.00397 0.93794 1.03229 1.19396 0.77334 0.94455 1.13460 1.91461 1.29198 1.97021 1.94035 1.18190 0.87525 0.83278 0.77332 1.90861 1.12127 1.86216 1.48795 1.45893 1.10593 1.05256 1.74466 1.19837 0.96440 0.82697 0.88822 0.86526 1.22575 0.99497 0.95891 0.95475 1.23798 0.87626 1.02800 0.84578 1.22778 0.88626 0.92754 0.96135 1.45758 1.12079 1.17054 1.57636 1.18938 0.90503 1.01596 1.24909 0.89770 1.24820 0.97916 0.96517 1.00527 1.69770 1.27258 1.12550 1.46855 0.86136 0.81723 0.77980 0.79531 1.21000 1.21393 1.20777 1.22419 0.84610 0.88250 1.00030 1.46608 1.25288 1.27510 1.13678 1.22396 1.01598 1.04736 0.86901 1.22234 0.99130 0.97266 1.00014 1.69804 1.24463 1.24133 1.00247 1.24427 0.92882 0.94051 0.98798 0.89436 0.92208 0.89426 0.90901 0.89979 0.90156 0.75790 0.87107 0.87450 0.92737 0.94098 0.93171 0.94749 0.89476 0.81489 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 8.34 36.01 0.30 -0.75 16 2 C -0.07 -0.75 6.11 -101.13 -0.62 -1.36 16 3 C -0.13 -0.94 10.01 36.00 0.36 -0.58 16 4 C -0.02 -0.30 7.36 -37.68 -0.28 -0.57 16 5 F -0.14 -1.69 15.57 2.25 0.04 -1.66 16 6 C 0.55 7.76 7.73 -12.58 -0.10 7.66 16 7 O -0.50 -8.08 12.82 5.27 0.07 -8.01 16 8 N -0.71 -9.65 5.12 -54.70 -0.28 -9.93 16 9 C 0.23 3.37 3.23 -67.70 -0.22 3.15 16 10 H 0.12 1.69 7.66 -51.93 -0.40 1.29 16 11 C -0.10 -1.42 6.08 -25.56 -0.16 -1.58 16 12 C 0.10 1.69 1.56 -136.70 -0.21 1.47 16 13 C 0.12 2.32 8.39 -3.34 -0.03 2.29 16 14 N -0.60 -13.84 3.69 -182.59 -0.67 -14.52 16 15 C -0.23 -5.98 10.70 -15.06 -0.16 -6.14 16 16 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 17 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16 18 N -0.92 -25.32 11.39 55.49 0.63 -24.68 16 19 Si 0.92 20.77 29.55 -169.99 -5.02 15.74 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.17 3.73 7.02 -3.34 -0.02 3.71 16 24 N -0.45 -7.72 3.37 -103.49 -0.35 -8.07 16 25 C -0.02 -0.35 12.03 -16.43 -0.20 -0.55 16 26 C -0.04 -0.60 11.86 -17.93 -0.21 -0.81 16 27 N -0.47 -8.70 11.25 -10.50 -0.12 -8.82 16 28 C 0.16 2.83 8.22 -154.60 -1.27 1.56 16 29 H 0.09 1.01 7.34 -51.92 -0.38 0.63 16 30 H 0.06 0.44 8.00 -51.93 -0.42 0.02 16 31 H 0.09 0.94 7.12 -51.93 -0.37 0.57 16 32 H 0.07 0.57 7.04 -51.93 -0.37 0.21 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.41 5.07 8.13 -40.82 -0.33 4.74 16 36 H 0.11 1.56 7.80 -51.93 -0.40 1.15 16 37 H 0.11 1.54 8.10 -51.93 -0.42 1.12 16 38 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 39 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.09 2.05 7.13 -51.93 -0.37 1.68 16 43 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16 44 H 0.17 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -31.29 369.42 -9.01 -40.30 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -5.96 Total: 6.68 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -2.91 Total: 7.40 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: -0.79 Total: -66.02 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.01 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.29 -9.01 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101623070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.763 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.03 seconds