Wall clock time and date at job start Tue Mar 31 2020 17:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50699 * 119.99932 * 2 1 4 4 C 1.33112 * 119.99884 * 180.02562 * 2 1 3 5 5 F 1.35102 * 119.99891 * 185.64713 * 4 2 1 6 6 C 1.47297 * 120.00218 * 5.64145 * 4 2 1 7 7 O 1.21603 * 119.99960 * 354.79698 * 6 4 2 8 8 N 1.34779 * 120.00183 * 174.80248 * 6 4 2 9 9 C 1.46497 * 120.00174 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.41813 * 36.02889 * 9 8 6 11 11 C 1.54732 * 110.48161 * 158.65736 * 9 8 6 12 12 C 1.53510 * 101.50921 * 94.40597 * 11 9 8 13 13 C 1.53024 * 115.31134 * 254.56212 * 12 11 9 14 14 N 1.47764 * 85.83178 * 266.36317 * 13 12 11 15 15 C 1.36930 * 134.41539 * 155.99097 * 14 13 12 16 16 H 1.08003 * 119.99761 * 0.02562 * 15 14 13 17 17 C 1.38814 * 120.00168 * 180.02562 * 15 14 13 18 18 N 1.31617 * 120.00007 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00111 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47069 * 59.99516 * 19 17 15 21 21 H 1.48494 * 109.47108 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46917 * 299.99820 * 19 17 15 23 23 C 1.47755 * 91.17119 * 336.02332 * 14 13 12 24 24 N 1.46161 * 106.64892 * 24.85504 * 12 11 9 25 25 C 1.37272 * 142.21201 * 163.63417 * 24 12 11 26 26 C 1.34519 * 106.91831 * 180.11982 * 25 24 12 27 27 N 1.33980 * 108.04483 * 359.97438 * 26 25 24 28 28 C 1.30859 * 109.34928 * 359.95929 * 27 26 25 29 29 H 1.09008 * 109.46904 * 238.53330 * 1 2 3 30 30 H 1.09002 * 109.47398 * 358.53318 * 1 2 3 31 31 H 1.08995 * 109.47504 * 118.53185 * 1 2 3 32 32 H 1.08998 * 109.46954 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47250 * 300.00880 * 3 2 1 34 34 H 1.09001 * 109.46999 * 60.00653 * 3 2 1 35 35 H 0.96999 * 119.99699 * 0.02562 * 8 6 4 36 36 H 1.08998 * 111.00821 * 336.35515 * 11 9 8 37 37 H 1.08999 * 111.02868 * 212.46871 * 11 9 8 38 38 H 1.08990 * 113.81665 * 20.58890 * 13 12 11 39 39 H 1.09008 * 113.81331 * 152.13786 * 13 12 11 40 40 H 0.96994 * 119.99954 * 180.02562 * 18 17 15 41 41 H 1.08995 * 113.81838 * 269.74993 * 23 14 13 42 42 H 1.09004 * 113.81691 * 138.20115 * 23 14 13 43 43 H 1.07999 * 126.54009 * 0.09686 * 25 24 12 44 44 H 1.07997 * 125.97770 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1725 -1.1528 -0.0005 5 9 3.5186 -1.1557 0.1146 6 6 1.4414 -2.4253 -0.1265 7 8 0.2254 -2.4296 -0.1348 8 7 2.1202 -3.5849 -0.2325 9 6 1.3930 -4.8504 -0.3583 10 1 0.4913 -4.7131 -0.9550 11 6 2.3000 -5.9359 -0.9856 12 6 2.8571 -6.6298 0.2653 13 6 4.3148 -6.3051 0.5989 14 7 4.6496 -7.5181 -0.1757 15 6 5.7618 -7.9491 -0.8481 16 1 6.6483 -7.3329 -0.8764 17 6 5.7500 -9.1782 -1.4933 18 7 4.6698 -9.9294 -1.4584 19 14 7.2675 -9.7665 -2.4100 20 1 8.4082 -9.8685 -1.4647 21 1 6.9989 -11.0989 -3.0081 22 1 7.6016 -8.7994 -3.4864 23 6 3.3041 -8.0796 0.0645 24 7 1.8896 -6.4016 1.3368 25 6 1.5235 -6.8500 2.5815 26 6 0.4697 -6.1096 2.9700 27 7 0.1965 -5.2327 1.9946 28 6 1.0439 -5.3997 1.0115 29 1 -0.3633 -0.5365 0.8766 30 1 -0.3634 1.0273 0.0263 31 1 -0.3634 -0.4908 -0.9028 32 1 3.3321 1.1059 -0.0005 33 1 1.9971 1.8767 -0.8899 34 1 1.9972 1.8766 0.8901 35 1 3.0901 -3.5814 -0.2254 36 1 3.1006 -5.4851 -1.5719 37 1 1.7174 -6.6302 -1.5911 38 1 4.6745 -5.3810 0.1467 39 1 4.5509 -6.3817 1.6604 40 1 4.6616 -10.7883 -1.9089 41 1 3.2362 -8.6897 0.9651 42 1 2.8645 -8.5586 -0.8104 43 1 1.9920 -7.6456 3.1418 44 1 -0.0624 -6.2048 3.9049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101623070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:55 Heat of formation + Delta-G solvation = 53.768071 kcal Electronic energy + Delta-G solvation = -29354.822048 eV Core-core repulsion = 25224.958230 eV Total energy + Delta-G solvation = -4129.863818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = -1.61 seconds Orbital eigenvalues (eV) -49.88973 -43.66774 -40.85811 -40.13630 -37.25777 -35.97044 -34.82472 -33.56409 -32.11346 -29.72581 -29.35221 -28.79950 -28.23289 -27.02218 -25.96341 -23.86328 -22.81235 -22.69467 -21.19135 -20.29025 -20.11496 -19.08588 -18.89821 -17.88847 -17.28061 -17.07369 -16.77742 -16.51100 -16.12131 -15.95813 -15.69398 -15.48454 -15.29072 -15.08963 -14.76565 -14.55286 -14.32084 -14.15154 -13.89193 -13.68198 -13.61770 -13.34069 -13.26137 -13.17339 -12.97794 -12.89555 -12.72569 -12.58961 -12.41132 -12.18149 -12.05388 -11.68970 -10.95820 -10.91801 -10.86063 -10.55347 -10.44346 -9.82924 -9.39974 -9.09501 -7.98216 -5.34214 0.07947 0.95191 1.47548 1.49316 1.55722 1.68159 1.82251 1.92092 2.29802 2.44675 2.81747 3.07042 3.12878 3.23413 3.31342 3.49143 3.54481 3.65245 3.90132 4.02679 4.17158 4.25061 4.31588 4.51313 4.52962 4.59340 4.63861 4.66507 4.72020 4.78547 4.79160 4.89013 4.92488 5.03126 5.08359 5.11803 5.14698 5.34474 5.35332 5.44188 5.51281 5.77441 5.88599 6.08530 6.30074 6.81386 6.94468 7.14613 7.51003 8.37595 9.18165 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.003467 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.868864 B = 8073.422978 C = 9477.514383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.050 4.050 3 C -0.128 4.128 4 C -0.054 4.054 5 F -0.141 7.141 6 C 0.547 3.453 7 O -0.529 6.529 8 N -0.706 5.706 9 C 0.238 3.762 10 H 0.120 0.880 11 C -0.087 4.087 12 C 0.120 3.880 13 C 0.128 3.872 14 N -0.620 5.620 15 C -0.238 4.238 16 H 0.092 0.908 17 C -0.055 4.055 18 N -0.950 5.950 19 Si 0.979 3.021 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.271 1.271 23 C 0.173 3.827 24 N -0.456 5.456 25 C -0.033 4.033 26 C -0.037 4.037 27 N -0.498 5.498 28 C 0.155 3.845 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.412 0.588 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.251 0.749 41 H 0.016 0.984 42 H 0.063 0.937 43 H 0.185 0.815 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 18.678 2.485 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.053 4.053 3 C -0.184 4.184 4 C -0.076 4.076 5 F -0.120 7.120 6 C 0.336 3.664 7 O -0.408 6.408 8 N -0.358 5.358 9 C 0.131 3.869 10 H 0.137 0.863 11 C -0.126 4.126 12 C 0.035 3.965 13 C 0.002 3.998 14 N -0.347 5.347 15 C -0.366 4.366 16 H 0.109 0.891 17 C -0.249 4.249 18 N -0.597 5.597 19 Si 0.807 3.193 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.197 1.197 23 C 0.046 3.954 24 N -0.139 5.139 25 C -0.166 4.166 26 C -0.185 4.185 27 N -0.218 5.218 28 C -0.109 4.109 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.249 0.751 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.034 0.966 42 H 0.081 0.919 43 H 0.202 0.798 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.874 18.845 2.300 20.191 hybrid contribution 2.176 -1.927 0.140 2.910 sum -4.698 16.918 2.441 17.727 Atomic orbital electron populations 1.20907 0.88545 1.03332 1.03453 1.23146 0.98394 0.94266 0.89470 1.21076 0.99747 0.92451 1.05098 1.19243 0.77433 0.94124 1.16785 1.91449 1.29134 1.96984 1.94421 1.18521 0.87400 0.83883 0.76623 1.90847 1.13155 1.86661 1.50112 1.45830 1.10796 1.04816 1.74371 1.19746 0.96559 0.83018 0.87614 0.86255 1.22578 0.99809 0.95794 0.94393 1.23370 0.87582 0.99771 0.85802 1.22875 0.89223 0.92128 0.95607 1.45978 1.11959 1.18631 1.58116 1.19326 0.91423 1.01592 1.24257 0.89063 1.25584 1.00414 0.96973 1.01934 1.69946 1.29016 1.12600 1.48155 0.85157 0.78648 0.77039 0.78498 1.20660 1.22306 1.19664 1.22235 0.84659 0.90348 0.98112 1.46620 1.25327 1.27898 1.14027 1.22823 1.01846 1.05224 0.86719 1.22746 0.98996 0.96292 1.00509 1.69815 1.25321 1.25357 1.01275 1.24870 0.92538 0.94066 0.99445 0.91266 0.89113 0.90407 0.91290 0.87745 0.88257 0.75130 0.85930 0.86981 0.90241 0.94277 0.93964 0.96600 0.91921 0.79793 0.78485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 8.34 71.24 0.59 -1.31 16 2 C -0.05 -0.91 6.11 -17.60 -0.11 -1.02 16 3 C -0.13 -1.48 10.01 71.24 0.71 -0.77 16 4 C -0.05 -1.25 7.36 23.50 0.17 -1.07 16 5 F -0.14 -3.26 15.57 44.97 0.70 -2.56 16 6 C 0.55 15.10 7.73 86.63 0.67 15.77 16 7 O -0.53 -16.87 12.82 -4.04 -0.05 -16.92 16 8 N -0.71 -18.55 5.12 -445.23 -2.28 -20.83 16 9 C 0.24 6.84 3.23 45.14 0.15 6.99 16 10 H 0.12 3.40 7.66 -2.39 -0.02 3.38 16 11 C -0.09 -2.52 6.08 31.36 0.19 -2.33 16 12 C 0.12 4.13 1.56 5.60 0.01 4.14 16 13 C 0.13 4.66 8.39 86.14 0.72 5.38 16 14 N -0.62 -28.64 3.69 -731.59 -2.70 -31.34 16 15 C -0.24 -12.18 10.70 84.03 0.90 -11.28 16 16 H 0.09 4.42 7.83 -2.91 -0.02 4.39 16 17 C -0.06 -2.91 5.50 84.86 0.47 -2.44 16 18 N -0.95 -53.45 11.39 21.65 0.25 -53.20 16 19 Si 0.98 42.73 29.55 68.60 2.03 44.76 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 21 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 C 0.17 7.60 7.02 86.15 0.60 8.21 16 24 N -0.46 -15.45 3.37 -481.33 -1.62 -17.08 16 25 C -0.03 -1.04 12.03 82.99 1.00 -0.04 16 26 C -0.04 -1.16 11.86 83.51 0.99 -0.17 16 27 N -0.50 -18.21 11.25 -187.12 -2.11 -20.32 16 28 C 0.15 5.29 8.22 138.31 1.14 6.43 16 29 H 0.07 1.55 7.34 -2.38 -0.02 1.53 16 30 H 0.09 1.04 8.00 -2.39 -0.02 1.02 16 31 H 0.08 1.60 7.12 -2.39 -0.02 1.58 16 32 H 0.07 0.90 7.04 -2.39 -0.02 0.88 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.41 9.76 8.13 -92.71 -0.75 9.00 16 36 H 0.12 3.27 7.80 -2.39 -0.02 3.25 16 37 H 0.11 3.16 8.10 -2.39 -0.02 3.15 16 38 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 39 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 3.06 7.13 -2.39 -0.02 3.04 16 43 H 0.18 4.98 8.06 -2.91 -0.02 4.96 16 44 H 0.20 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -67.75 369.42 2.70 -65.04 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.29 Total: 25.99 kcal Atomic # 6 Polarization: 18.26 SS G_CDS: 8.21 Total: 26.47 kcal Atomic # 7 Polarization: -134.31 SS G_CDS: -8.46 Total: -142.77 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.05 Total: -16.92 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.70 Total: -2.56 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.75 2.70 -65.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101623070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.811 kcal (2) G-P(sol) polarization free energy of solvation -67.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.61 seconds