Wall clock time and date at job start Tue Mar 31 2020 21:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48494 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46802 * 299.99876 * 3 2 1 6 6 H 1.48500 * 109.47075 * 59.99747 * 3 2 1 7 7 C 1.38812 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99758 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00357 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.30420 * 35.72215 * 10 9 7 12 12 C 1.54395 * 110.34105 * 273.54761 * 10 9 7 13 13 N 1.48139 * 104.61698 * 264.99297 * 12 10 9 14 14 C 1.34780 * 127.83688 * 140.41506 * 13 12 10 15 15 O 1.21279 * 120.00121 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99952 * 0.02786 * 14 13 12 17 17 C 1.53003 * 109.47357 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47187 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47023 * 180.02562 * 18 17 16 20 20 C 1.53000 * 117.49997 * 185.00174 * 19 18 17 21 21 C 1.53002 * 60.02940 * 252.49592 * 20 19 18 22 22 C 1.48143 * 104.32674 * 320.67857 * 13 12 10 23 23 C 1.53984 * 104.81918 * 39.27434 * 22 13 12 24 24 H 1.08998 * 110.15793 * 95.23913 * 23 22 13 25 25 C 1.52995 * 110.57827 * 217.42651 * 23 22 13 26 26 F 1.39902 * 109.47361 * 175.72708 * 25 23 22 27 27 F 1.39908 * 109.46925 * 295.72043 * 25 23 22 28 28 F 1.39901 * 109.47601 * 55.71831 * 25 23 22 29 29 H 0.97000 * 120.00093 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99619 * 0.02562 * 9 7 2 31 31 H 1.09004 * 110.40084 * 146.20701 * 12 10 9 32 32 H 1.09003 * 110.40359 * 23.78143 * 12 10 9 33 33 H 1.09005 * 109.47493 * 59.99612 * 16 14 13 34 34 H 1.09001 * 109.46952 * 299.99818 * 16 14 13 35 35 H 1.08998 * 109.46793 * 59.99852 * 17 16 14 36 36 H 1.08996 * 109.46794 * 300.00284 * 17 16 14 37 37 H 1.08994 * 109.46971 * 59.99889 * 18 17 16 38 38 H 1.09001 * 109.47173 * 300.00014 * 18 17 16 39 39 H 1.09007 * 115.55004 * 330.66846 * 19 18 17 40 40 H 1.09002 * 117.49833 * 359.97438 * 20 19 18 41 41 H 1.09002 * 117.49953 * 144.99738 * 20 19 18 42 42 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 43 43 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 44 44 H 1.09000 * 110.41102 * 158.11564 * 22 13 12 45 45 H 1.09004 * 110.40459 * 280.53948 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0027 11 1 2.9660 -3.5688 0.5995 12 6 2.4041 -4.0781 -1.4418 13 7 1.3098 -4.9957 -1.8358 14 6 0.6918 -5.0804 -3.0305 15 8 -0.1949 -5.8906 -3.1985 16 6 1.1025 -4.1683 -4.1577 17 6 0.2511 -4.4688 -5.3929 18 6 0.6676 -3.5423 -6.5371 19 6 -0.1841 -3.8424 -7.7721 20 6 0.1588 -3.0987 -9.0645 21 6 -1.1044 -2.7312 -8.2834 22 6 1.0446 -5.7946 -0.6168 23 6 1.1647 -4.7915 0.5454 24 1 0.1808 -4.4050 0.8111 25 6 1.8216 -5.4512 1.7595 26 9 2.0078 -4.4967 2.7651 27 9 0.9971 -6.4761 2.2363 28 9 3.0603 -5.9844 1.3873 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0016 31 1 3.3626 -4.5965 -1.4672 32 1 2.4244 -3.2072 -2.0971 33 1 2.1541 -4.3322 -4.3930 34 1 0.9547 -3.1308 -3.8577 35 1 -0.8006 -4.3051 -5.1579 36 1 0.3992 -5.5062 -5.6926 37 1 1.7193 -3.7056 -6.7722 38 1 0.5192 -2.5050 -6.2370 39 1 -0.5375 -4.8697 -7.8612 40 1 0.9910 -2.3954 -9.0348 41 1 0.0310 -3.6368 -10.0038 42 1 -1.1031 -1.7864 -7.7399 43 1 -2.0632 -3.0278 -8.7087 44 1 0.0405 -6.2174 -0.6504 45 1 1.7875 -6.5852 -0.5114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112149434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:00 Heat of formation + Delta-G solvation = -163.277782 kcal Electronic energy + Delta-G solvation = -29727.536324 eV Core-core repulsion = 25137.571504 eV Total energy + Delta-G solvation = -4589.964819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.92671 -47.43769 -47.34115 -39.86713 -38.00619 -37.46696 -34.10666 -33.73083 -32.06389 -30.67669 -28.23562 -27.64257 -25.49522 -24.29240 -22.69198 -22.46359 -21.74393 -20.53131 -20.36366 -19.11611 -18.33826 -18.02426 -17.77607 -16.81898 -16.71107 -15.92885 -15.56686 -15.28798 -14.98113 -14.58889 -14.34943 -14.28022 -14.19582 -13.82985 -13.71935 -13.65845 -13.50797 -13.39732 -13.34307 -13.16382 -12.38473 -12.27604 -12.02023 -11.91972 -11.69455 -11.64525 -11.62330 -11.34887 -11.04494 -10.97145 -10.91927 -10.88082 -10.76766 -10.31149 -10.19238 -9.94275 -9.90783 -9.62517 -9.22980 -8.54993 -7.21019 -5.95328 -3.28001 2.76395 2.91027 3.19100 3.32873 3.39349 3.41559 3.68611 3.96541 4.07136 4.19521 4.45003 4.49154 4.71083 4.82058 4.83393 4.88070 4.99054 5.12081 5.18080 5.24446 5.30342 5.32322 5.45414 5.50260 5.52874 5.65721 5.66252 5.73174 5.77250 5.79717 5.85857 5.92274 5.99041 6.01353 6.12617 6.13645 6.22590 6.29279 6.41292 6.52670 7.53407 7.75283 8.19717 8.36974 9.32862 9.81940 10.17336 11.26132 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008058 B = 0.003953 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.856039 B = 7081.131288 C = 9931.605088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.075 0.925 9 N -0.710 5.710 10 C 0.178 3.822 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.614 5.614 14 C 0.540 3.460 15 O -0.552 6.552 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.091 4.091 19 C -0.149 4.149 20 C -0.185 4.185 21 C -0.182 4.182 22 C 0.117 3.883 23 C -0.166 4.166 24 H 0.128 0.872 25 C 0.464 3.536 26 F -0.173 7.173 27 F -0.187 7.187 28 F -0.184 7.184 29 H 0.258 0.742 30 H 0.387 0.613 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -10.107 -8.223 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.384 4.384 8 H 0.093 0.907 9 N -0.351 5.351 10 C 0.066 3.934 11 H 0.094 0.906 12 C -0.054 4.054 13 N -0.347 5.347 14 C 0.330 3.670 15 O -0.431 6.431 16 C -0.176 4.176 17 C -0.136 4.136 18 C -0.128 4.128 19 C -0.168 4.168 20 C -0.222 4.222 21 C -0.219 4.219 22 C -0.007 4.007 23 C -0.187 4.187 24 H 0.146 0.854 25 C 0.410 3.590 26 F -0.154 7.154 27 F -0.169 7.169 28 F -0.165 7.165 29 H 0.068 0.932 30 H 0.222 0.778 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.121 0.879 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.206 -10.375 -8.387 13.721 hybrid contribution 0.233 0.923 0.374 1.023 sum 3.438 -9.452 -8.014 12.860 Atomic orbital electron populations 1.69671 1.05213 1.26023 1.56286 1.24770 0.95472 0.97854 1.01915 0.86120 0.78887 0.83823 0.77311 1.20336 1.21726 1.21688 1.19237 0.91161 0.83548 1.44450 0.90672 1.42434 1.05772 0.99010 1.87883 1.21044 0.94053 0.85385 0.92957 0.90632 1.23600 0.88568 0.93361 0.99836 1.48856 1.37411 1.38106 1.10335 1.20353 0.80808 0.83726 0.82073 1.90669 1.31220 1.38982 1.82187 1.21653 1.01654 1.00725 0.93554 1.21294 1.00164 0.99631 0.92508 1.21210 0.98743 1.00005 0.92842 1.22351 1.02437 0.97289 0.94685 1.22960 0.99604 1.04070 0.95548 1.23054 0.94620 0.99945 1.04271 1.22001 1.03257 0.92694 0.82748 1.23780 1.03719 0.99013 0.92203 0.85428 1.20296 0.76710 0.76610 0.85434 1.93235 1.95245 1.63766 1.63164 1.93172 1.72306 1.61454 1.89938 1.93151 1.44899 1.87114 1.91371 0.93236 0.77789 0.91573 0.88564 0.89175 0.88047 0.91076 0.91469 0.91590 0.91462 0.87852 0.88872 0.89132 0.88647 0.89084 0.88987 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.12 13.06 55.49 0.72 -25.40 16 2 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 3 Si 0.91 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.31 9.97 -15.06 -0.15 -6.46 16 8 H 0.08 1.80 7.83 -52.49 -0.41 1.39 16 9 N -0.71 -15.76 5.14 -52.07 -0.27 -16.03 16 10 C 0.18 3.08 2.99 -66.53 -0.20 2.88 16 11 H 0.08 1.32 7.37 -51.93 -0.38 0.94 16 12 C 0.07 1.09 6.64 -2.41 -0.02 1.07 16 13 N -0.61 -9.43 3.32 -169.56 -0.56 -9.99 16 14 C 0.54 8.73 7.91 -10.98 -0.09 8.65 16 15 O -0.55 -10.46 16.25 5.56 0.09 -10.37 16 16 C -0.14 -1.79 4.68 -27.88 -0.13 -1.92 16 17 C -0.10 -1.21 4.46 -26.73 -0.12 -1.32 16 18 C -0.09 -0.95 5.50 -26.73 -0.15 -1.10 16 19 C -0.15 -1.49 5.74 -90.59 -0.52 -2.01 16 20 C -0.18 -1.65 10.25 -26.73 -0.27 -1.92 16 21 C -0.18 -1.75 10.18 -26.69 -0.27 -2.02 16 22 C 0.12 1.66 6.38 -2.63 -0.02 1.65 16 23 C -0.17 -2.51 2.82 -89.44 -0.25 -2.76 16 24 H 0.13 2.04 7.64 -51.93 -0.40 1.65 16 25 C 0.46 6.75 2.53 37.15 0.09 6.84 16 26 F -0.17 -2.85 16.93 2.25 0.04 -2.82 16 27 F -0.19 -2.63 17.17 2.25 0.04 -2.59 16 28 F -0.18 -2.55 16.06 2.25 0.04 -2.51 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.39 9.40 7.50 -40.82 -0.31 9.09 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.55 7.22 -51.93 -0.37 1.17 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.42 7.95 -51.93 -0.41 1.01 16 35 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 39 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.10 0.94 8.03 -51.93 -0.42 0.52 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 1.34 7.88 -51.93 -0.41 0.93 16 45 H 0.08 0.98 7.22 -51.93 -0.37 0.61 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -28.80 382.29 -8.18 -36.97 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.83 Total: 9.69 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -2.18 Total: 1.39 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.11 Total: -51.42 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 0.11 Total: -7.92 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.80 -8.18 -36.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112149434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.304 kcal (2) G-P(sol) polarization free energy of solvation -28.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds