Wall clock time and date at job start Tue Mar 31 2020 21:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86804 * 119.99966 * 2 1 4 4 H 1.48494 * 109.47180 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46802 * 299.99876 * 3 2 1 6 6 H 1.48500 * 109.47075 * 59.99747 * 3 2 1 7 7 C 1.38812 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99758 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00357 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.30420 * 35.72215 * 10 9 7 12 12 C 1.54395 * 110.34105 * 273.54761 * 10 9 7 13 13 N 1.48139 * 104.61698 * 264.99297 * 12 10 9 14 14 C 1.34780 * 127.83688 * 140.41506 * 13 12 10 15 15 O 1.21279 * 120.00121 * 180.02562 * 14 13 12 16 16 C 1.50699 * 119.99952 * 0.02786 * 14 13 12 17 17 C 1.53003 * 109.47357 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47187 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.47023 * 180.02562 * 18 17 16 20 20 C 1.53000 * 117.49997 * 185.00174 * 19 18 17 21 21 C 1.53002 * 60.02940 * 252.49592 * 20 19 18 22 22 C 1.48143 * 104.32674 * 320.67857 * 13 12 10 23 23 C 1.53984 * 104.81918 * 39.27434 * 22 13 12 24 24 H 1.08998 * 110.15793 * 95.23913 * 23 22 13 25 25 C 1.52995 * 110.57827 * 217.42651 * 23 22 13 26 26 F 1.39902 * 109.47361 * 175.72708 * 25 23 22 27 27 F 1.39908 * 109.46925 * 295.72043 * 25 23 22 28 28 F 1.39901 * 109.47601 * 55.71831 * 25 23 22 29 29 H 0.97000 * 120.00093 * 0.02562 * 1 2 3 30 30 H 0.97005 * 119.99619 * 0.02562 * 9 7 2 31 31 H 1.09004 * 110.40084 * 146.20701 * 12 10 9 32 32 H 1.09003 * 110.40359 * 23.78143 * 12 10 9 33 33 H 1.09005 * 109.47493 * 59.99612 * 16 14 13 34 34 H 1.09001 * 109.46952 * 299.99818 * 16 14 13 35 35 H 1.08998 * 109.46793 * 59.99852 * 17 16 14 36 36 H 1.08996 * 109.46794 * 300.00284 * 17 16 14 37 37 H 1.08994 * 109.46971 * 59.99889 * 18 17 16 38 38 H 1.09001 * 109.47173 * 300.00014 * 18 17 16 39 39 H 1.09007 * 115.55004 * 330.66846 * 19 18 17 40 40 H 1.09002 * 117.49833 * 359.97438 * 20 19 18 41 41 H 1.09002 * 117.49953 * 144.99738 * 20 19 18 42 42 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 43 43 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 44 44 H 1.09000 * 110.41102 * 158.11564 * 22 13 12 45 45 H 1.09004 * 110.40459 * 280.53948 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0027 11 1 2.9660 -3.5688 0.5995 12 6 2.4041 -4.0781 -1.4418 13 7 1.3098 -4.9957 -1.8358 14 6 0.6918 -5.0804 -3.0305 15 8 -0.1949 -5.8906 -3.1985 16 6 1.1025 -4.1683 -4.1577 17 6 0.2511 -4.4688 -5.3929 18 6 0.6676 -3.5423 -6.5371 19 6 -0.1841 -3.8424 -7.7721 20 6 0.1588 -3.0987 -9.0645 21 6 -1.1044 -2.7312 -8.2834 22 6 1.0446 -5.7946 -0.6168 23 6 1.1647 -4.7915 0.5454 24 1 0.1808 -4.4050 0.8111 25 6 1.8216 -5.4512 1.7595 26 9 2.0078 -4.4967 2.7651 27 9 0.9971 -6.4761 2.2363 28 9 3.0603 -5.9844 1.3873 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0016 31 1 3.3626 -4.5965 -1.4672 32 1 2.4244 -3.2072 -2.0971 33 1 2.1541 -4.3322 -4.3930 34 1 0.9547 -3.1308 -3.8577 35 1 -0.8006 -4.3051 -5.1579 36 1 0.3992 -5.5062 -5.6926 37 1 1.7193 -3.7056 -6.7722 38 1 0.5192 -2.5050 -6.2370 39 1 -0.5375 -4.8697 -7.8612 40 1 0.9910 -2.3954 -9.0348 41 1 0.0310 -3.6368 -10.0038 42 1 -1.1031 -1.7864 -7.7399 43 1 -2.0632 -3.0278 -8.7087 44 1 0.0405 -6.2174 -0.6504 45 1 1.7875 -6.5852 -0.5114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112149434.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:59 Heat of formation + Delta-G solvation = -177.980279 kcal Electronic energy + Delta-G solvation = -29728.173872 eV Core-core repulsion = 25137.571504 eV Total energy + Delta-G solvation = -4590.602367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -51.13079 -48.60426 -48.58382 -41.14614 -39.15372 -38.46112 -35.81426 -34.75943 -33.52118 -32.28227 -29.26377 -29.12422 -26.64197 -26.01148 -23.97767 -23.24755 -22.83201 -21.71586 -21.34284 -20.36373 -19.59313 -19.40661 -19.13622 -18.30880 -17.98810 -17.00188 -16.86463 -16.49680 -16.21359 -15.85562 -15.56806 -15.45721 -15.28739 -15.19467 -15.02661 -15.01209 -14.82126 -14.73194 -14.60506 -14.39204 -13.57223 -13.41641 -13.30107 -13.06876 -13.01439 -12.89955 -12.67369 -12.61791 -12.48109 -12.35340 -12.23966 -12.01685 -11.93798 -11.78126 -11.73368 -11.17505 -11.07290 -10.85263 -10.70543 -9.89473 -9.03705 -7.94305 -5.25094 1.50383 1.51373 1.53366 1.61373 1.66826 1.98590 2.54631 2.76081 2.82798 2.93937 2.97717 3.38334 3.47273 3.68565 3.70105 3.82098 3.88690 4.00551 4.03483 4.08438 4.18450 4.21850 4.23734 4.41669 4.50540 4.53837 4.69380 4.72420 4.76977 4.80073 4.81248 4.89768 4.93526 4.95202 5.09026 5.22570 5.25656 5.27862 5.35541 5.49873 5.56166 6.24244 6.49689 7.10328 7.33207 7.99630 8.24257 9.28557 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008058 B = 0.003953 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.856039 B = 7081.131288 C = 9931.605088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.065 4.065 3 Si 0.966 3.034 4 H -0.260 1.260 5 H -0.297 1.297 6 H -0.301 1.301 7 C -0.238 4.238 8 H 0.087 0.913 9 N -0.723 5.723 10 C 0.172 3.828 11 H 0.080 0.920 12 C 0.083 3.917 13 N -0.615 5.615 14 C 0.533 3.467 15 O -0.585 6.585 16 C -0.130 4.130 17 C -0.091 4.091 18 C -0.084 4.084 19 C -0.161 4.161 20 C -0.173 4.173 21 C -0.192 4.192 22 C 0.118 3.882 23 C -0.158 4.158 24 H 0.115 0.885 25 C 0.473 3.527 26 F -0.185 7.185 27 F -0.182 7.182 28 F -0.175 7.175 29 H 0.250 0.750 30 H 0.374 0.626 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.760 -10.959 -9.059 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.224 1.224 6 H -0.229 1.229 7 C -0.369 4.369 8 H 0.105 0.895 9 N -0.362 5.362 10 C 0.062 3.938 11 H 0.098 0.902 12 C -0.043 4.043 13 N -0.348 5.348 14 C 0.325 3.675 15 O -0.466 6.466 16 C -0.169 4.169 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.179 4.179 20 C -0.210 4.210 21 C -0.229 4.229 22 C -0.005 4.005 23 C -0.179 4.179 24 H 0.134 0.866 25 C 0.418 3.582 26 F -0.166 7.166 27 F -0.163 7.163 28 F -0.156 7.156 29 H 0.059 0.941 30 H 0.206 0.794 31 H 0.119 0.881 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.425 -11.266 -9.217 15.534 hybrid contribution -0.415 1.073 0.680 1.336 sum 5.010 -10.193 -8.538 14.209 Atomic orbital electron populations 1.69818 1.06709 1.25960 1.59166 1.25462 0.96078 1.00841 1.03401 0.85190 0.78713 0.80293 0.76241 1.18447 1.22409 1.22878 1.19628 0.91738 0.84359 1.41201 0.89524 1.42563 1.05287 1.00203 1.88163 1.21250 0.93966 0.84067 0.94567 0.90186 1.23458 0.89740 0.93544 0.97510 1.48933 1.37352 1.38047 1.10456 1.20897 0.80239 0.83623 0.82783 1.90652 1.32574 1.40518 1.82820 1.21672 1.03329 0.99233 0.92670 1.21216 0.98708 1.00063 0.92910 1.21143 0.99680 0.98985 0.92316 1.22363 1.02905 0.97432 0.95171 1.23037 0.99049 1.03504 0.95418 1.23116 0.95402 0.99621 1.04778 1.22082 1.03884 0.92702 0.81831 1.23615 1.02770 0.98625 0.92894 0.86639 1.20064 0.76923 0.76456 0.84731 1.93217 1.95329 1.64399 1.63681 1.93187 1.72230 1.61088 1.89829 1.93170 1.44318 1.86915 1.91228 0.94145 0.79386 0.88089 0.89370 0.86419 0.88986 0.93381 0.91516 0.90099 0.92150 0.87844 0.88372 0.87869 0.89263 0.88516 0.89421 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.75 13.06 21.65 0.28 -55.47 16 2 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 3 Si 0.97 42.99 29.55 68.60 2.03 45.02 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -11.65 9.97 84.03 0.84 -10.81 16 8 H 0.09 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.72 -31.78 5.14 -318.64 -1.64 -33.41 16 10 C 0.17 5.65 2.99 45.90 0.14 5.79 16 11 H 0.08 2.60 7.37 -2.39 -0.02 2.58 16 12 C 0.08 2.28 6.64 86.54 0.57 2.85 16 13 N -0.62 -17.87 3.32 -808.74 -2.68 -20.56 16 14 C 0.53 16.76 7.91 87.66 0.69 17.45 16 15 O -0.58 -22.05 16.25 -3.03 -0.05 -22.10 16 16 C -0.13 -3.25 4.68 29.85 0.14 -3.11 16 17 C -0.09 -2.19 4.46 30.59 0.14 -2.05 16 18 C -0.08 -1.67 5.50 30.59 0.17 -1.50 16 19 C -0.16 -3.04 5.74 -10.77 -0.06 -3.10 16 20 C -0.17 -2.79 10.25 30.60 0.31 -2.48 16 21 C -0.19 -3.57 10.18 30.62 0.31 -3.25 16 22 C 0.12 3.17 6.38 86.40 0.55 3.72 16 23 C -0.16 -4.57 2.82 -10.03 -0.03 -4.60 16 24 H 0.12 3.70 7.64 -2.39 -0.02 3.68 16 25 C 0.47 12.88 2.53 71.98 0.18 13.06 16 26 F -0.18 -5.87 16.93 44.97 0.76 -5.11 16 27 F -0.18 -4.79 17.17 44.97 0.77 -4.01 16 28 F -0.17 -4.34 16.06 44.97 0.72 -3.62 16 29 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 30 H 0.37 18.42 7.50 -92.70 -0.70 17.73 16 31 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.09 2.64 7.22 -2.39 -0.02 2.62 16 33 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.09 2.52 7.95 -2.39 -0.02 2.51 16 35 H 0.05 1.36 8.10 -2.39 -0.02 1.34 16 36 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.06 1.28 7.88 -2.39 -0.02 1.26 16 39 H 0.10 1.95 8.08 -2.38 -0.02 1.93 16 40 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.75 8.03 -2.39 -0.02 1.73 16 43 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.09 2.46 7.88 -2.39 -0.02 2.45 16 45 H 0.10 2.25 7.22 -2.39 -0.02 2.23 16 Total: -1.00 -61.68 382.29 4.93 -56.75 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: 0.31 Total: 33.51 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 4.42 Total: 9.00 kcal Atomic # 7 Polarization: -105.40 SS G_CDS: -4.04 Total: -109.44 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.10 kcal Atomic # 9 Polarization: -15.00 SS G_CDS: 2.26 Total: -12.74 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -61.68 4.93 -56.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112149434.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.228 kcal (2) G-P(sol) polarization free energy of solvation -61.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds