Wall clock time and date at job start Wed Apr 1 2020 00:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99630 * 2 1 4 4 H 1.48505 * 109.46987 * 239.99842 * 3 2 1 5 5 H 1.48499 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46889 * 120.00176 * 3 2 1 7 7 C 1.38811 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99786 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99607 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99525 * 184.85946 * 9 7 2 11 11 C 1.53003 * 109.47188 * 303.27242 * 10 9 7 12 12 N 1.46500 * 109.46696 * 302.68016 * 11 10 9 13 13 C 1.34781 * 119.99694 * 185.24735 * 12 11 10 14 14 O 1.21282 * 120.00003 * 354.74983 * 13 12 11 15 15 C 1.50702 * 119.99892 * 174.73954 * 13 12 11 16 16 C 1.53004 * 115.54581 * 66.23462 * 15 13 12 17 17 F 1.39902 * 109.46874 * 60.58885 * 16 15 13 18 18 F 1.39903 * 109.46633 * 180.58460 * 16 15 13 19 19 F 1.39892 * 109.47203 * 300.58692 * 16 15 13 20 20 C 1.52995 * 117.50061 * 280.56841 * 15 13 12 21 21 C 1.52997 * 117.49704 * 211.90390 * 15 13 12 22 22 C 1.52996 * 109.46976 * 183.26859 * 10 9 7 23 23 C 1.52995 * 109.47318 * 300.00106 * 22 10 9 24 24 C 1.53000 * 109.47217 * 299.99887 * 23 22 10 25 25 C 1.52996 * 109.46884 * 59.99847 * 24 23 22 26 26 C 1.52995 * 109.47318 * 300.00091 * 25 24 23 27 27 H 0.97005 * 120.00041 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00436 * 4.85370 * 9 7 2 29 29 H 1.08995 * 109.47097 * 62.67989 * 11 10 9 30 30 H 1.09002 * 109.46968 * 182.68068 * 11 10 9 31 31 H 0.96994 * 120.00309 * 5.25733 * 12 11 10 32 32 H 1.09000 * 117.50225 * 359.97438 * 20 15 13 33 33 H 1.09000 * 117.49957 * 145.02142 * 20 15 13 34 34 H 1.09007 * 117.49742 * 214.97832 * 21 15 13 35 35 H 1.08994 * 117.50076 * 359.97438 * 21 15 13 36 36 H 1.09005 * 109.47232 * 179.97438 * 22 10 9 37 37 H 1.09001 * 109.46943 * 60.00213 * 22 10 9 38 38 H 1.09007 * 109.46809 * 179.97438 * 23 22 10 39 39 H 1.08996 * 109.47193 * 60.00182 * 23 22 10 40 40 H 1.09004 * 109.47224 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.46754 * 300.00083 * 24 23 22 42 42 H 1.09005 * 109.47232 * 60.00529 * 25 24 23 43 43 H 1.09001 * 109.46943 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.47193 * 299.99818 * 26 25 24 45 45 H 1.09007 * 109.46809 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0541 -3.6544 0.1086 11 6 3.0808 -3.7502 -1.0218 12 7 2.3988 -3.6276 -2.3125 13 6 3.0904 -3.7886 -3.4581 14 8 4.2932 -3.9403 -3.4241 15 6 2.3690 -3.7805 -4.7812 16 6 1.7296 -2.4477 -5.1759 17 9 2.7212 -1.4657 -5.2739 18 9 1.0870 -2.5865 -6.4109 19 9 0.7960 -2.0725 -4.2040 20 6 1.6459 -5.0623 -5.1995 21 6 2.9412 -4.6493 -5.9031 22 6 1.0689 -4.8202 0.0029 23 6 0.0423 -4.7244 1.1333 24 6 0.7617 -4.7854 2.4822 25 6 1.7469 -3.6196 2.5878 26 6 2.7735 -3.7155 1.4575 27 1 -0.4850 0.8401 0.0004 28 1 0.3582 -2.3895 -0.0709 29 1 3.8106 -2.9473 -0.9187 30 1 3.5897 -4.7127 -0.9697 31 1 1.4496 -3.4303 -2.3427 32 1 1.6923 -5.9117 -4.5180 33 1 0.7149 -4.9561 -5.7563 34 1 2.8617 -4.2716 -6.9225 35 1 3.8396 -5.2264 -5.6843 36 1 1.6110 -5.7625 0.0829 37 1 0.5563 -4.7767 -0.9581 38 1 -0.6599 -5.5547 1.0577 39 1 -0.4998 -3.7822 1.0529 40 1 0.0302 -4.7176 3.2875 41 1 1.3038 -5.7277 2.5625 42 1 1.2049 -2.6773 2.5075 43 1 2.2592 -3.6628 3.5490 44 1 3.3156 -4.6576 1.5379 45 1 3.4757 -2.8851 1.5331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115744034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:52 Heat of formation + Delta-G solvation = -165.405521 kcal Electronic energy + Delta-G solvation = -31596.970961 eV Core-core repulsion = 27006.913876 eV Total energy + Delta-G solvation = -4590.057085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 4.38 seconds Orbital eigenvalues (eV) -49.99896 -47.57055 -47.40434 -39.98861 -38.73621 -36.61659 -34.53550 -33.28921 -31.19252 -30.25913 -28.65643 -27.39234 -25.63260 -23.75865 -23.00483 -22.82779 -22.04288 -20.45663 -20.06950 -18.66418 -18.26538 -18.17334 -17.98496 -17.13945 -16.19047 -15.67383 -15.09455 -14.88909 -14.66717 -14.33989 -14.28924 -14.06869 -13.96890 -13.89934 -13.74040 -13.62926 -13.58703 -13.49120 -13.28235 -12.77064 -12.24861 -12.11705 -11.97336 -11.86587 -11.72503 -11.59478 -11.18177 -11.00933 -10.96623 -10.83649 -10.76996 -10.57416 -10.18106 -10.06349 -9.89168 -9.71179 -9.58671 -9.35718 -8.87518 -8.57427 -7.00393 -5.78424 -3.07555 2.33633 2.83562 3.08916 3.36288 3.44603 3.49243 3.51428 3.75936 4.05626 4.22860 4.55373 4.59441 4.68190 4.83376 5.15879 5.23094 5.25339 5.25884 5.30418 5.52683 5.55961 5.59288 5.69145 5.74517 5.79275 5.94134 6.00734 6.08189 6.11462 6.15482 6.26234 6.41736 6.45414 6.56759 6.72823 6.76728 6.78778 6.91688 7.01513 7.17373 7.72026 7.85995 8.39151 8.44035 9.52209 10.04113 10.40352 11.43265 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.005481 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.462887 B = 5107.565988 C = 6643.552022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.005 4.005 3 Si 0.898 3.102 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.709 5.709 10 C 0.191 3.809 11 C 0.115 3.885 12 N -0.686 5.686 13 C 0.550 3.450 14 O -0.534 6.534 15 C -0.237 4.237 16 C 0.496 3.504 17 F -0.172 7.172 18 F -0.181 7.181 19 F -0.162 7.162 20 C -0.131 4.131 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.116 4.116 27 H 0.255 0.745 28 H 0.386 0.614 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.408 0.592 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 -13.056 -7.028 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.365 4.365 8 H 0.086 0.914 9 N -0.352 5.352 10 C 0.099 3.901 11 C -0.011 4.011 12 N -0.336 5.336 13 C 0.332 3.668 14 O -0.412 6.412 15 C -0.242 4.242 16 C 0.441 3.559 17 F -0.153 7.153 18 F -0.163 7.163 19 F -0.143 7.143 20 C -0.168 4.168 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.153 4.153 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.156 4.156 27 H 0.064 0.936 28 H 0.221 0.779 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.245 0.755 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.101 0.899 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.400 -12.973 -6.952 14.785 hybrid contribution -0.348 1.586 -0.059 1.625 sum 1.052 -11.387 -7.012 13.414 Atomic orbital electron populations 1.69629 1.04929 1.25680 1.57413 1.24645 0.95361 0.97358 1.02766 0.86417 0.78709 0.84103 0.77887 1.21320 1.21805 1.21343 1.19004 0.90876 0.83794 1.42818 0.91405 1.42454 1.05996 0.99258 1.87441 1.19811 0.90947 0.87710 0.91680 1.21949 0.96297 1.00425 0.82423 1.45787 1.13893 1.68826 1.05057 1.18610 0.86768 0.78060 0.83321 1.90690 1.13392 1.50267 1.86816 1.22621 1.09708 0.91755 1.00081 1.19058 0.76701 0.85480 0.74680 1.93234 1.61444 1.64782 1.95851 1.93153 1.82697 1.95910 1.44513 1.93297 1.66317 1.92360 1.62353 1.23235 0.97624 0.93589 1.02361 1.23143 0.98587 0.98654 0.95088 1.21692 0.97345 0.97724 0.98410 1.21474 0.97453 1.01917 0.94503 1.21472 0.98206 0.98384 0.96922 1.21368 0.96998 0.99661 0.96676 1.21830 0.98009 1.00078 0.95711 0.93555 0.77910 0.91301 0.92539 0.75459 0.86508 0.86530 0.86773 0.86097 0.92263 0.92460 0.93204 0.90748 0.93003 0.93216 0.89917 0.93735 0.93773 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.43 13.06 55.49 0.72 -25.71 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.90 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.23 -5.92 8.71 -15.06 -0.13 -6.05 16 8 H 0.07 1.74 6.73 -52.49 -0.35 1.39 16 9 N -0.71 -15.34 3.59 -47.23 -0.17 -15.51 16 10 C 0.19 3.32 0.40 -131.82 -0.05 3.27 16 11 C 0.11 2.04 4.32 -4.04 -0.02 2.02 16 12 N -0.69 -11.85 4.97 -60.29 -0.30 -12.15 16 13 C 0.55 9.44 6.93 -10.98 -0.08 9.36 16 14 O -0.53 -10.63 16.72 5.56 0.09 -10.54 16 15 C -0.24 -3.26 2.02 -155.66 -0.32 -3.57 16 16 C 0.50 7.66 3.05 37.16 0.11 7.77 16 17 F -0.17 -3.04 17.23 2.25 0.04 -3.00 16 18 F -0.18 -2.42 15.89 2.25 0.04 -2.39 16 19 F -0.16 -2.86 16.07 2.25 0.04 -2.83 16 20 C -0.13 -1.25 9.67 -26.69 -0.26 -1.51 16 21 C -0.12 -1.22 9.50 -26.69 -0.25 -1.47 16 22 C -0.11 -1.67 4.65 -26.74 -0.12 -1.80 16 23 C -0.12 -1.69 5.75 -26.73 -0.15 -1.85 16 24 C -0.11 -1.60 5.92 -26.73 -0.16 -1.75 16 25 C -0.11 -1.81 5.76 -26.74 -0.15 -1.96 16 26 C -0.12 -1.96 4.61 -26.73 -0.12 -2.08 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.39 9.01 6.42 -40.82 -0.26 8.74 16 29 H 0.07 1.41 7.11 -51.93 -0.37 1.04 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.41 7.10 6.27 -40.82 -0.26 6.84 16 32 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.12 0.94 7.76 -51.93 -0.40 0.53 16 34 H 0.11 1.00 7.80 -51.93 -0.40 0.59 16 35 H 0.12 1.24 8.01 -51.93 -0.42 0.83 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.82 7.14 -51.93 -0.37 0.45 16 38 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 39 H 0.07 1.28 6.80 -51.93 -0.35 0.92 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 1.66 7.60 -51.93 -0.39 1.26 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 1.20 7.57 -51.92 -0.39 0.81 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -29.38 367.88 -7.31 -36.69 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -6.49 Total: 12.48 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.80 Total: 0.14 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.26 Total: -53.37 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.11 Total: -8.22 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.38 -7.31 -36.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115744034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.714 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.38 seconds