Wall clock time and date at job start Wed Apr 1 2020 00:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99630 * 2 1 4 4 H 1.48505 * 109.46987 * 239.99842 * 3 2 1 5 5 H 1.48499 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46889 * 120.00176 * 3 2 1 7 7 C 1.38811 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99786 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99607 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99525 * 184.85946 * 9 7 2 11 11 C 1.53003 * 109.47188 * 303.27242 * 10 9 7 12 12 N 1.46500 * 109.46696 * 302.68016 * 11 10 9 13 13 C 1.34781 * 119.99694 * 185.24735 * 12 11 10 14 14 O 1.21282 * 120.00003 * 354.74983 * 13 12 11 15 15 C 1.50702 * 119.99892 * 174.73954 * 13 12 11 16 16 C 1.53004 * 115.54581 * 66.23462 * 15 13 12 17 17 F 1.39902 * 109.46874 * 60.58885 * 16 15 13 18 18 F 1.39903 * 109.46633 * 180.58460 * 16 15 13 19 19 F 1.39892 * 109.47203 * 300.58692 * 16 15 13 20 20 C 1.52995 * 117.50061 * 280.56841 * 15 13 12 21 21 C 1.52997 * 117.49704 * 211.90390 * 15 13 12 22 22 C 1.52996 * 109.46976 * 183.26859 * 10 9 7 23 23 C 1.52995 * 109.47318 * 300.00106 * 22 10 9 24 24 C 1.53000 * 109.47217 * 299.99887 * 23 22 10 25 25 C 1.52996 * 109.46884 * 59.99847 * 24 23 22 26 26 C 1.52995 * 109.47318 * 300.00091 * 25 24 23 27 27 H 0.97005 * 120.00041 * 359.97438 * 1 2 3 28 28 H 0.96993 * 120.00436 * 4.85370 * 9 7 2 29 29 H 1.08995 * 109.47097 * 62.67989 * 11 10 9 30 30 H 1.09002 * 109.46968 * 182.68068 * 11 10 9 31 31 H 0.96994 * 120.00309 * 5.25733 * 12 11 10 32 32 H 1.09000 * 117.50225 * 359.97438 * 20 15 13 33 33 H 1.09000 * 117.49957 * 145.02142 * 20 15 13 34 34 H 1.09007 * 117.49742 * 214.97832 * 21 15 13 35 35 H 1.08994 * 117.50076 * 359.97438 * 21 15 13 36 36 H 1.09005 * 109.47232 * 179.97438 * 22 10 9 37 37 H 1.09001 * 109.46943 * 60.00213 * 22 10 9 38 38 H 1.09007 * 109.46809 * 179.97438 * 23 22 10 39 39 H 1.08996 * 109.47193 * 60.00182 * 23 22 10 40 40 H 1.09004 * 109.47224 * 180.02562 * 24 23 22 41 41 H 1.09005 * 109.46754 * 300.00083 * 24 23 22 42 42 H 1.09005 * 109.47232 * 60.00529 * 25 24 23 43 43 H 1.09001 * 109.46943 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.47193 * 299.99818 * 26 25 24 45 45 H 1.09007 * 109.46809 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0541 -3.6544 0.1086 11 6 3.0808 -3.7502 -1.0218 12 7 2.3988 -3.6276 -2.3125 13 6 3.0904 -3.7886 -3.4581 14 8 4.2932 -3.9403 -3.4241 15 6 2.3690 -3.7805 -4.7812 16 6 1.7296 -2.4477 -5.1759 17 9 2.7212 -1.4657 -5.2739 18 9 1.0870 -2.5865 -6.4109 19 9 0.7960 -2.0725 -4.2040 20 6 1.6459 -5.0623 -5.1995 21 6 2.9412 -4.6493 -5.9031 22 6 1.0689 -4.8202 0.0029 23 6 0.0423 -4.7244 1.1333 24 6 0.7617 -4.7854 2.4822 25 6 1.7469 -3.6196 2.5878 26 6 2.7735 -3.7155 1.4575 27 1 -0.4850 0.8401 0.0004 28 1 0.3582 -2.3895 -0.0709 29 1 3.8106 -2.9473 -0.9187 30 1 3.5897 -4.7127 -0.9697 31 1 1.4496 -3.4303 -2.3427 32 1 1.6923 -5.9117 -4.5180 33 1 0.7149 -4.9561 -5.7563 34 1 2.8617 -4.2716 -6.9225 35 1 3.8396 -5.2264 -5.6843 36 1 1.6110 -5.7625 0.0829 37 1 0.5563 -4.7767 -0.9581 38 1 -0.6599 -5.5547 1.0577 39 1 -0.4998 -3.7822 1.0529 40 1 0.0302 -4.7176 3.2875 41 1 1.3038 -5.7277 2.5625 42 1 1.2049 -2.6773 2.5075 43 1 2.2592 -3.6628 3.5490 44 1 3.3156 -4.6576 1.5379 45 1 3.4757 -2.8851 1.5331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115744034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:48 Heat of formation + Delta-G solvation = -182.599786 kcal Electronic energy + Delta-G solvation = -31597.716561 eV Core-core repulsion = 27006.913876 eV Total energy + Delta-G solvation = -4590.802684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 11.56 seconds Orbital eigenvalues (eV) -51.23672 -48.76967 -48.72725 -41.29763 -40.07396 -37.68271 -35.94505 -35.08971 -32.83192 -31.53992 -30.34924 -28.52926 -26.96597 -25.68973 -24.22076 -23.63492 -23.31983 -21.75862 -21.35809 -19.96402 -19.66068 -19.43174 -19.24858 -18.97106 -17.33038 -17.09386 -16.67192 -16.14584 -16.04105 -15.79574 -15.60405 -15.53371 -15.36813 -15.15557 -15.04200 -14.95104 -14.89786 -14.72688 -14.65304 -14.31190 -13.53868 -13.41043 -13.39350 -13.28066 -12.89936 -12.82739 -12.63733 -12.59973 -12.54970 -12.08601 -11.97932 -11.89711 -11.87972 -11.69429 -11.29533 -11.16200 -11.05850 -10.72539 -10.70743 -10.02044 -8.91319 -7.88709 -5.12426 1.09182 1.41616 1.43909 1.47511 1.71984 1.97232 2.22966 2.56494 2.64571 2.90561 3.20047 3.42737 3.46680 3.64912 3.76700 3.81286 3.91636 4.02894 4.14097 4.37865 4.43601 4.48651 4.55952 4.66993 4.72443 4.76801 4.80048 4.82233 4.91301 4.95880 5.01400 5.07023 5.18714 5.23438 5.39379 5.49068 5.51426 5.54422 5.61079 5.67554 5.81751 6.34057 6.48070 7.07742 7.43330 8.17187 8.41837 9.33377 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.005481 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.462887 B = 5107.565988 C = 6643.552022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.062 4.062 3 Si 0.940 3.060 4 H -0.294 1.294 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.208 4.208 8 H 0.060 0.940 9 N -0.710 5.710 10 C 0.187 3.813 11 C 0.120 3.880 12 N -0.687 5.687 13 C 0.548 3.452 14 O -0.567 6.567 15 C -0.266 4.266 16 C 0.493 3.507 17 F -0.192 7.192 18 F -0.167 7.167 19 F -0.181 7.181 20 C -0.101 4.101 21 C -0.105 4.105 22 C -0.107 4.107 23 C -0.113 4.113 24 C -0.107 4.107 25 C -0.107 4.107 26 C -0.114 4.114 27 H 0.246 0.754 28 H 0.377 0.623 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.408 0.592 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 -16.232 -7.630 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.255 4.255 3 Si 0.772 3.228 4 H -0.221 1.221 5 H -0.224 1.224 6 H -0.209 1.209 7 C -0.341 4.341 8 H 0.078 0.922 9 N -0.350 5.350 10 C 0.097 3.903 11 C -0.006 4.006 12 N -0.336 5.336 13 C 0.333 3.667 14 O -0.447 6.447 15 C -0.270 4.270 16 C 0.439 3.561 17 F -0.173 7.173 18 F -0.148 7.148 19 F -0.162 7.162 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.154 4.154 27 H 0.055 0.945 28 H 0.211 0.789 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.245 0.755 32 H 0.151 0.849 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.107 0.893 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.342 -16.179 -7.552 17.905 hybrid contribution -0.250 2.499 0.110 2.514 sum 1.092 -13.680 -7.442 15.612 Atomic orbital electron populations 1.69732 1.05671 1.25255 1.60120 1.25123 0.95965 0.99483 1.04886 0.85712 0.77583 0.81996 0.77481 1.22147 1.22351 1.20925 1.19134 0.90590 0.85116 1.39219 0.92165 1.42496 1.05620 0.99891 1.87042 1.20074 0.91466 0.86978 0.91819 1.21838 0.95684 1.00144 0.82920 1.45834 1.13794 1.68788 1.05182 1.19102 0.86486 0.76840 0.84294 1.90664 1.14820 1.51671 1.87521 1.22513 1.12666 0.92417 0.99436 1.19310 0.76217 0.85759 0.74857 1.93191 1.62241 1.65908 1.95960 1.93171 1.82372 1.95808 1.43438 1.93259 1.67013 1.92663 1.63251 1.23513 0.98013 0.90961 1.01305 1.23352 0.99271 0.96802 0.94796 1.21667 0.96796 0.97236 0.98779 1.21445 0.97686 1.01282 0.94698 1.21445 0.97862 0.98187 0.96912 1.21303 0.97175 0.98794 0.97171 1.21806 0.97722 1.00586 0.95323 0.94496 0.78864 0.94871 0.90395 0.75497 0.84869 0.84440 0.84976 0.85962 0.89329 0.92076 0.90434 0.94082 0.92295 0.90520 0.94338 0.92452 0.90603 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.29 13.06 21.65 0.28 -56.00 16 2 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 3 Si 0.94 47.28 29.55 68.60 2.03 49.30 16 4 H -0.29 -14.96 7.11 99.48 0.71 -14.26 16 5 H -0.30 -15.08 7.11 99.48 0.71 -14.38 16 6 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.21 -10.85 8.71 84.03 0.73 -10.12 16 8 H 0.06 3.21 6.73 -2.91 -0.02 3.19 16 9 N -0.71 -31.25 3.59 -303.34 -1.09 -32.34 16 10 C 0.19 6.36 0.40 3.60 0.00 6.36 16 11 C 0.12 4.18 4.32 86.38 0.37 4.56 16 12 N -0.69 -23.33 4.97 -463.05 -2.30 -25.63 16 13 C 0.55 18.41 6.93 87.66 0.61 19.02 16 14 O -0.57 -22.38 16.72 -3.04 -0.05 -22.43 16 15 C -0.27 -6.87 2.02 -52.93 -0.11 -6.98 16 16 C 0.49 14.89 3.05 71.98 0.22 15.11 16 17 F -0.19 -6.86 17.23 44.97 0.77 -6.08 16 18 F -0.17 -4.16 15.89 44.97 0.71 -3.44 16 19 F -0.18 -6.41 16.07 44.97 0.72 -5.69 16 20 C -0.10 -1.57 9.67 30.62 0.30 -1.28 16 21 C -0.11 -1.88 9.50 30.62 0.29 -1.59 16 22 C -0.11 -2.85 4.65 30.59 0.14 -2.70 16 23 C -0.11 -3.04 5.75 30.59 0.18 -2.86 16 24 C -0.11 -2.73 5.92 30.59 0.18 -2.54 16 25 C -0.11 -3.41 5.76 30.59 0.18 -3.24 16 26 C -0.11 -3.73 4.61 30.59 0.14 -3.59 16 27 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 28 H 0.38 18.06 6.42 -92.71 -0.60 17.46 16 29 H 0.03 1.39 7.11 -2.39 -0.02 1.37 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.41 14.01 6.27 -92.71 -0.58 13.42 16 32 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.14 1.61 7.76 -2.39 -0.02 1.59 16 34 H 0.13 1.88 7.80 -2.38 -0.02 1.86 16 35 H 0.12 2.19 8.01 -2.39 -0.02 2.18 16 36 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.06 1.60 7.14 -2.39 -0.02 1.58 16 38 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.04 1.38 6.80 -2.39 -0.02 1.37 16 40 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 42 H 0.04 1.57 7.60 -2.38 -0.02 1.55 16 43 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.04 1.37 7.57 -2.38 -0.02 1.35 16 Total: -1.00 -66.75 367.88 4.63 -62.12 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.14 Total: 33.04 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 3.70 Total: 7.16 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -3.11 Total: -113.98 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -0.05 Total: -22.43 kcal Atomic # 9 Polarization: -17.43 SS G_CDS: 2.21 Total: -15.21 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.30 kcal Total: -66.75 4.63 -62.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115744034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.479 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.56 seconds