Wall clock time and date at job start Tue Mar 31 2020 23:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00282 * 2 1 4 4 H 1.48498 * 109.47263 * 269.99790 * 3 2 1 5 5 H 1.48506 * 109.47047 * 29.99653 * 3 2 1 6 6 H 1.48503 * 109.47286 * 149.99548 * 3 2 1 7 7 C 1.37886 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99829 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99529 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46641 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47469 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47104 * 305.00536 * 12 11 10 14 14 N 1.46909 * 109.46567 * 64.99972 * 12 11 10 15 15 C 1.50699 * 109.47371 * 185.00056 * 12 11 10 16 16 O 1.21279 * 119.99884 * 260.00319 * 15 12 11 17 17 N 1.34770 * 119.99961 * 80.00477 * 15 12 11 18 18 C 1.46500 * 119.99955 * 180.02562 * 17 15 12 19 19 H 1.09000 * 109.47175 * 324.99716 * 18 17 15 20 20 C 1.52997 * 109.47204 * 204.99611 * 18 17 15 21 21 C 1.50695 * 109.47112 * 64.99809 * 20 18 17 22 22 C 1.38240 * 120.00314 * 269.72917 * 21 20 18 23 23 C 1.38238 * 120.00125 * 179.76796 * 22 21 20 24 24 C 1.38234 * 119.99763 * 0.50343 * 23 22 21 25 25 C 1.38230 * 120.00216 * 359.74713 * 24 23 22 26 26 C 1.38237 * 120.00136 * 0.02562 * 25 24 23 27 27 C 1.50706 * 109.46949 * 84.99690 * 18 17 15 28 28 O 1.20818 * 120.00197 * 359.72387 * 27 18 17 29 29 O 1.34230 * 119.99763 * 179.97438 * 27 18 17 30 30 H 0.97001 * 119.99880 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47783 * 60.00015 * 9 7 2 32 32 H 1.09000 * 109.47551 * 299.99436 * 9 7 2 33 33 H 1.08997 * 109.47479 * 59.99834 * 10 9 7 34 34 H 1.08999 * 109.46981 * 299.99515 * 10 9 7 35 35 H 1.09006 * 109.46614 * 59.99834 * 11 10 9 36 36 H 1.08999 * 109.47100 * 300.00555 * 11 10 9 37 37 H 1.00896 * 111.00099 * 296.03903 * 14 12 11 38 38 H 1.00893 * 110.99965 * 60.00819 * 14 12 11 39 39 H 0.96997 * 119.99935 * 359.97438 * 17 15 12 40 40 H 1.08994 * 109.47510 * 185.00146 * 20 18 17 41 41 H 1.09001 * 109.47096 * 305.00009 * 20 18 17 42 42 H 1.08004 * 119.99808 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99634 * 180.23264 * 23 22 21 44 44 H 1.07996 * 119.99808 * 179.72684 * 24 23 22 45 45 H 1.08002 * 120.00542 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.00318 * 179.97438 * 26 25 24 47 47 H 0.96692 * 116.99954 * 180.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0009 12 6 6.0615 -4.0792 0.0015 13 1 5.6269 -4.6179 0.8434 14 7 5.6728 -4.7363 -1.2536 15 6 7.5634 -4.0810 0.1253 16 8 8.2529 -4.2343 -0.8606 17 7 8.1403 -3.9123 1.3315 18 6 9.6004 -3.9135 1.4518 19 1 10.0233 -4.6191 0.7367 20 6 9.9949 -4.3274 2.8709 21 6 9.5737 -5.7538 3.1135 22 6 8.3231 -6.0259 3.6359 23 6 7.9349 -7.3346 3.8540 24 6 8.8013 -8.3707 3.5594 25 6 10.0538 -8.0984 3.0418 26 6 10.4402 -6.7899 2.8193 27 6 10.1290 -2.5313 1.1663 28 8 9.3651 -1.6383 0.8858 29 8 11.4491 -2.2937 1.2187 30 1 -0.4850 0.8401 -0.0004 31 1 3.8746 -0.6801 0.8911 32 1 3.8752 -0.6805 -0.8889 33 1 3.6585 -3.1503 -0.8892 34 1 3.6578 -3.1506 0.8908 35 1 5.9149 -2.1229 0.8910 36 1 5.9149 -2.1228 -0.8890 37 1 4.6691 -4.8055 -1.3297 38 1 6.0636 -4.2553 -2.0497 39 1 7.5888 -3.7893 2.1199 40 1 11.0753 -4.2428 2.9869 41 1 9.5001 -3.6750 3.5904 42 1 7.6480 -5.2161 3.8706 43 1 6.9565 -7.5473 4.2587 44 1 8.4997 -9.3929 3.7339 45 1 10.7308 -8.9078 2.8119 46 1 11.4189 -6.5771 2.4153 47 1 11.7406 -1.3916 1.0284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118438526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:39 Heat of formation + Delta-G solvation = -120.500779 kcal Electronic energy + Delta-G solvation = -28680.738442 eV Core-core repulsion = 24634.485313 eV Total energy + Delta-G solvation = -4046.253129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05436 -39.66341 -39.42860 -36.58729 -36.16023 -35.63026 -33.35042 -32.78613 -31.45936 -31.20651 -29.81299 -28.09521 -25.85446 -25.11253 -22.96103 -22.58719 -21.76539 -21.14305 -20.28253 -20.16316 -18.39424 -17.67487 -17.30237 -16.98631 -16.71797 -16.37167 -15.86125 -15.39543 -15.32851 -14.97884 -14.74358 -14.65047 -14.18330 -13.89419 -13.75214 -13.69990 -13.40279 -13.25986 -13.05675 -12.60904 -12.57488 -12.36029 -12.15322 -11.99979 -11.74368 -11.52797 -11.41194 -11.32091 -11.02185 -10.89568 -10.77092 -10.11395 -9.94778 -9.78141 -9.57160 -9.49912 -9.22054 -9.21465 -9.05750 -8.57099 -8.53636 -6.06450 -4.04631 0.97861 1.09692 1.93265 2.29908 2.71810 3.08403 3.29985 3.37368 3.41937 3.45160 4.25547 4.31938 4.41765 4.43944 4.65830 4.70417 4.74473 4.78604 4.82811 4.96707 5.07438 5.16113 5.18017 5.24120 5.27967 5.28124 5.36198 5.67887 5.69291 5.71830 5.85790 6.02393 6.14278 6.16385 6.20728 6.22273 6.24380 6.45035 6.58206 6.67665 6.83010 7.06230 7.25345 7.30823 7.38194 7.56084 7.59997 7.77068 8.10609 8.51013 8.98088 9.56411 11.06902 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.002769 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.406379 B =10108.341698 C =11142.020840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C -0.149 4.149 12 C 0.080 3.920 13 H 0.102 0.898 14 N -0.829 5.829 15 C 0.535 3.465 16 O -0.529 6.529 17 N -0.711 5.711 18 C 0.167 3.833 19 H 0.128 0.872 20 C -0.082 4.082 21 C -0.086 4.086 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.112 4.112 27 C 0.462 3.538 28 O -0.495 6.495 29 O -0.517 6.517 30 H 0.263 0.737 31 H 0.015 0.985 32 H 0.010 0.990 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.354 0.646 38 H 0.349 0.651 39 H 0.407 0.593 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.093 -14.040 9.331 30.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.189 4.189 12 C -0.036 4.036 13 H 0.120 0.880 14 N -0.362 5.362 15 C 0.322 3.678 16 O -0.403 6.403 17 N -0.366 5.366 18 C 0.059 3.941 19 H 0.146 0.854 20 C -0.120 4.120 21 C -0.086 4.086 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.136 4.136 26 C -0.130 4.130 27 C 0.300 3.700 28 O -0.380 6.380 29 O -0.329 6.329 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.243 0.757 40 H 0.122 0.878 41 H 0.105 0.895 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 25.468 -14.823 8.871 30.774 hybrid contribution -0.240 2.645 -0.012 2.656 sum 25.228 -12.178 8.859 29.381 Atomic orbital electron populations 1.69917 1.06283 1.26892 1.51149 1.25036 0.94728 0.99185 0.94542 0.86786 0.80351 0.83638 0.78561 1.20314 1.21375 1.19031 1.21140 0.89476 0.94442 1.50855 0.91018 1.19557 0.97107 0.92121 0.96286 1.21477 0.90831 1.00333 1.01137 1.22436 0.98949 0.94414 1.03098 1.21375 0.90266 0.95940 0.95988 0.88027 1.58677 1.16950 1.57409 1.03161 1.20791 0.90940 0.73851 0.82211 1.90662 1.64939 1.47907 1.36830 1.45732 1.04812 1.75123 1.10916 1.20313 0.82835 0.90897 1.00066 0.85408 1.20830 1.03729 0.93943 0.93503 1.19592 0.94799 0.94172 1.00025 1.21059 0.95523 0.97008 0.99117 1.21184 0.99719 0.92702 0.99729 1.21201 0.94181 0.99296 0.99061 1.21149 0.96625 0.96582 0.99288 1.21058 0.99581 0.92482 0.99901 1.24105 0.80221 0.92103 0.73523 1.90782 1.58192 1.46293 1.42778 1.84490 1.25995 1.39192 1.83239 0.92736 0.96625 0.97185 0.92778 0.92417 0.91372 0.91723 0.83117 0.83725 0.75747 0.87806 0.89480 0.86040 0.85801 0.86094 0.86029 0.85869 0.73011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.19 16 2 C 0.07 1.94 5.47 -17.81 -0.10 1.85 16 3 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -1.86 4.92 -26.73 -0.13 -2.00 16 11 C -0.15 -2.36 4.84 -26.73 -0.13 -2.49 16 12 C 0.08 1.08 3.21 -68.86 -0.22 0.86 16 13 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 14 N -0.83 -11.52 8.94 -5.65 -0.05 -11.57 16 15 C 0.53 7.53 6.90 -10.99 -0.08 7.46 16 16 O -0.53 -9.15 15.91 5.56 0.09 -9.06 16 17 N -0.71 -7.58 4.07 -54.93 -0.22 -7.80 16 18 C 0.17 1.56 2.47 -69.08 -0.17 1.39 16 19 H 0.13 1.31 7.58 -51.93 -0.39 0.91 16 20 C -0.08 -0.52 4.86 -27.89 -0.14 -0.65 16 21 C -0.09 -0.63 4.95 -104.62 -0.52 -1.15 16 22 C -0.11 -0.82 9.11 -39.58 -0.36 -1.18 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 24 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 25 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 26 C -0.11 -0.81 9.70 -39.58 -0.38 -1.20 16 27 C 0.46 5.02 7.66 36.01 0.28 5.29 16 28 O -0.49 -7.42 17.07 -18.74 -0.32 -7.74 16 29 O -0.52 -3.94 13.23 -39.26 -0.52 -4.46 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 32 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 33 H 0.05 0.99 6.87 -51.93 -0.36 0.63 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.35 4.62 7.55 -39.29 -0.30 4.32 16 38 H 0.35 5.07 8.58 -39.30 -0.34 4.73 16 39 H 0.41 3.48 7.85 -40.82 -0.32 3.16 16 40 H 0.10 0.51 7.94 -51.93 -0.41 0.10 16 41 H 0.09 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.12 0.73 7.60 -52.48 -0.40 0.33 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 45 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 47 H 0.41 1.68 9.10 45.56 0.41 2.09 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -37.12 396.34 -8.79 -45.91 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -6.26 Total: 9.74 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -3.59 Total: -11.21 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.50 Total: -46.56 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.75 Total: -21.26 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.12 -8.79 -45.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118438526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.593 kcal (2) G-P(sol) polarization free energy of solvation -37.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds