Wall clock time and date at job start Tue Mar 31 2020 23:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00282 * 2 1 4 4 H 1.48498 * 109.47263 * 269.99790 * 3 2 1 5 5 H 1.48506 * 109.47047 * 29.99653 * 3 2 1 6 6 H 1.48503 * 109.47286 * 149.99548 * 3 2 1 7 7 C 1.37886 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99829 * 359.97438 * 7 2 1 9 9 C 1.50693 * 119.99529 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46641 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47469 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.47104 * 305.00536 * 12 11 10 14 14 N 1.46909 * 109.46567 * 64.99972 * 12 11 10 15 15 C 1.50699 * 109.47371 * 185.00056 * 12 11 10 16 16 O 1.21279 * 119.99884 * 260.00319 * 15 12 11 17 17 N 1.34770 * 119.99961 * 80.00477 * 15 12 11 18 18 C 1.46500 * 119.99955 * 180.02562 * 17 15 12 19 19 H 1.09000 * 109.47175 * 324.99716 * 18 17 15 20 20 C 1.52997 * 109.47204 * 204.99611 * 18 17 15 21 21 C 1.50695 * 109.47112 * 64.99809 * 20 18 17 22 22 C 1.38240 * 120.00314 * 269.72917 * 21 20 18 23 23 C 1.38238 * 120.00125 * 179.76796 * 22 21 20 24 24 C 1.38234 * 119.99763 * 0.50343 * 23 22 21 25 25 C 1.38230 * 120.00216 * 359.74713 * 24 23 22 26 26 C 1.38237 * 120.00136 * 0.02562 * 25 24 23 27 27 C 1.50706 * 109.46949 * 84.99690 * 18 17 15 28 28 O 1.20818 * 120.00197 * 359.72387 * 27 18 17 29 29 O 1.34230 * 119.99763 * 179.97438 * 27 18 17 30 30 H 0.97001 * 119.99880 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47783 * 60.00015 * 9 7 2 32 32 H 1.09000 * 109.47551 * 299.99436 * 9 7 2 33 33 H 1.08997 * 109.47479 * 59.99834 * 10 9 7 34 34 H 1.08999 * 109.46981 * 299.99515 * 10 9 7 35 35 H 1.09006 * 109.46614 * 59.99834 * 11 10 9 36 36 H 1.08999 * 109.47100 * 300.00555 * 11 10 9 37 37 H 1.00896 * 111.00099 * 296.03903 * 14 12 11 38 38 H 1.00893 * 110.99965 * 60.00819 * 14 12 11 39 39 H 0.96997 * 119.99935 * 359.97438 * 17 15 12 40 40 H 1.08994 * 109.47510 * 185.00146 * 20 18 17 41 41 H 1.09001 * 109.47096 * 305.00009 * 20 18 17 42 42 H 1.08004 * 119.99808 * 359.97438 * 22 21 20 43 43 H 1.07999 * 119.99634 * 180.23264 * 23 22 21 44 44 H 1.07996 * 119.99808 * 179.72684 * 24 23 22 45 45 H 1.08002 * 120.00542 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.00318 * 179.97438 * 26 25 24 47 47 H 0.96692 * 116.99954 * 180.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5515 -2.6367 0.0009 12 6 6.0615 -4.0792 0.0015 13 1 5.6269 -4.6179 0.8434 14 7 5.6728 -4.7363 -1.2536 15 6 7.5634 -4.0810 0.1253 16 8 8.2529 -4.2343 -0.8606 17 7 8.1403 -3.9123 1.3315 18 6 9.6004 -3.9135 1.4518 19 1 10.0233 -4.6191 0.7367 20 6 9.9949 -4.3274 2.8709 21 6 9.5737 -5.7538 3.1135 22 6 8.3231 -6.0259 3.6359 23 6 7.9349 -7.3346 3.8540 24 6 8.8013 -8.3707 3.5594 25 6 10.0538 -8.0984 3.0418 26 6 10.4402 -6.7899 2.8193 27 6 10.1290 -2.5313 1.1663 28 8 9.3651 -1.6383 0.8858 29 8 11.4491 -2.2937 1.2187 30 1 -0.4850 0.8401 -0.0004 31 1 3.8746 -0.6801 0.8911 32 1 3.8752 -0.6805 -0.8889 33 1 3.6585 -3.1503 -0.8892 34 1 3.6578 -3.1506 0.8908 35 1 5.9149 -2.1229 0.8910 36 1 5.9149 -2.1228 -0.8890 37 1 4.6691 -4.8055 -1.3297 38 1 6.0636 -4.2553 -2.0497 39 1 7.5888 -3.7893 2.1199 40 1 11.0753 -4.2428 2.9869 41 1 9.5001 -3.6750 3.5904 42 1 7.6480 -5.2161 3.8706 43 1 6.9565 -7.5473 4.2587 44 1 8.4997 -9.3929 3.7339 45 1 10.7308 -8.9078 2.8119 46 1 11.4189 -6.5771 2.4153 47 1 11.7406 -1.3916 1.0284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118438526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:23 Heat of formation + Delta-G solvation = -147.585065 kcal Electronic energy + Delta-G solvation = -28681.912905 eV Core-core repulsion = 24634.485313 eV Total energy + Delta-G solvation = -4047.427592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 26.16 seconds Orbital eigenvalues (eV) -41.90863 -40.59739 -40.04733 -37.61752 -37.15781 -36.55763 -35.23903 -33.52773 -33.25466 -31.70820 -30.55890 -29.61782 -27.05485 -25.99834 -24.13850 -23.43238 -22.54084 -21.90441 -21.77398 -21.26549 -19.20270 -18.90310 -18.63585 -18.15112 -17.56362 -17.21831 -16.65592 -16.41715 -16.23078 -16.01719 -15.87569 -15.79169 -15.69743 -14.93814 -14.89111 -14.51514 -14.29582 -14.19927 -13.98792 -13.85711 -13.79706 -13.65587 -13.13801 -13.03073 -12.73950 -12.61899 -12.54595 -12.45462 -12.14419 -11.82772 -11.80315 -11.72975 -11.69597 -11.47993 -11.35403 -10.88968 -10.78477 -10.42171 -9.74153 -9.70669 -9.59477 -8.31419 -6.34644 0.44306 0.57571 1.11285 1.32802 1.33936 1.37426 1.45883 1.80014 2.27550 2.33235 2.91171 3.04101 3.55773 3.64916 3.74260 3.81337 3.91139 3.95532 4.05917 4.13912 4.21733 4.31360 4.35978 4.36983 4.47322 4.53061 4.68835 4.70474 4.80520 4.85268 4.93347 5.04760 5.10277 5.18621 5.18938 5.23566 5.49280 5.54652 5.56472 5.63207 5.65080 5.70805 5.71516 6.01263 6.18050 6.26756 6.36555 6.46161 6.73655 6.89527 7.10349 7.30192 8.85129 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.002769 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.406379 B =10108.341698 C =11142.020840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.946 3.054 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.250 1.250 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.091 4.091 11 C -0.135 4.135 12 C 0.085 3.915 13 H 0.125 0.875 14 N -0.831 5.831 15 C 0.533 3.467 16 O -0.566 6.566 17 N -0.699 5.699 18 C 0.166 3.834 19 H 0.121 0.879 20 C -0.071 4.071 21 C -0.093 4.093 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.122 4.122 27 C 0.467 3.533 28 O -0.541 6.541 29 O -0.504 6.504 30 H 0.266 0.734 31 H 0.018 0.982 32 H 0.008 0.992 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.357 0.643 38 H 0.345 0.655 39 H 0.418 0.582 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.370 -13.904 10.446 32.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.174 1.174 7 C -0.567 4.567 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.128 4.128 11 C -0.175 4.175 12 C -0.030 4.030 13 H 0.142 0.858 14 N -0.364 5.364 15 C 0.320 3.680 16 O -0.444 6.444 17 N -0.353 5.353 18 C 0.059 3.941 19 H 0.139 0.861 20 C -0.108 4.108 21 C -0.093 4.093 22 C -0.138 4.138 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.140 4.140 27 C 0.308 3.692 28 O -0.431 6.431 29 O -0.317 6.317 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.173 0.827 38 H 0.158 0.842 39 H 0.256 0.744 40 H 0.140 0.860 41 H 0.118 0.882 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 27.784 -14.701 10.029 32.995 hybrid contribution -0.928 2.511 -0.341 2.698 sum 26.856 -12.190 9.688 31.044 Atomic orbital electron populations 1.70059 1.08127 1.28071 1.52780 1.25970 0.95567 1.03296 0.94333 0.85722 0.79482 0.78819 0.78999 1.19632 1.20765 1.17386 1.21509 0.92024 0.93198 1.49990 0.94370 1.19533 0.93949 0.95486 0.96099 1.21318 0.92808 0.97116 1.01605 1.22236 0.96556 0.96027 1.02672 1.21364 0.90426 0.94582 0.96655 0.85761 1.58693 1.17208 1.57258 1.03204 1.20818 0.90909 0.73591 0.82646 1.90645 1.65594 1.49898 1.38216 1.45628 1.05807 1.73568 1.10284 1.20468 0.81755 0.90083 1.01823 0.86136 1.20819 1.04957 0.93508 0.91541 1.19718 0.94858 0.94614 1.00150 1.21305 0.95942 0.97410 0.99127 1.21426 1.00344 0.93029 1.00081 1.21465 0.94418 1.00035 0.99062 1.21427 0.96943 0.97247 0.99245 1.21342 1.00359 0.92567 0.99734 1.24296 0.80692 0.91962 0.72211 1.90770 1.59414 1.47742 1.45148 1.84452 1.24184 1.40687 1.82417 0.92517 0.96353 0.97355 0.92721 0.91681 0.90767 0.93204 0.82721 0.84195 0.74417 0.85989 0.88165 0.84783 0.84929 0.84947 0.84635 0.84417 0.71031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.01 0.31 5.47 84.66 0.46 0.77 16 3 Si 0.95 45.15 27.47 68.60 1.88 47.04 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 7 C -0.53 -30.37 9.66 25.60 0.25 -30.12 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 10 C -0.09 -3.28 4.92 30.60 0.15 -3.13 16 11 C -0.13 -4.06 4.84 30.59 0.15 -3.92 16 12 C 0.08 2.17 3.21 44.17 0.14 2.31 16 13 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 14 N -0.83 -22.27 8.94 -171.80 -1.54 -23.80 16 15 C 0.53 14.32 6.90 87.66 0.61 14.93 16 16 O -0.57 -19.24 15.91 -3.03 -0.05 -19.29 16 17 N -0.70 -13.63 4.07 -446.10 -1.81 -15.44 16 18 C 0.17 2.79 2.47 44.25 0.11 2.90 16 19 H 0.12 2.29 7.58 -2.39 -0.02 2.27 16 20 C -0.07 -0.71 4.86 29.85 0.14 -0.56 16 21 C -0.09 -1.17 4.95 -19.87 -0.10 -1.27 16 22 C -0.12 -1.57 9.11 22.27 0.20 -1.37 16 23 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 24 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 25 C -0.13 -1.71 10.05 22.27 0.22 -1.48 16 26 C -0.12 -1.55 9.70 22.27 0.22 -1.33 16 27 C 0.47 9.34 7.66 71.24 0.55 9.88 16 28 O -0.54 -15.59 17.07 21.99 0.38 -15.21 16 29 O -0.50 -6.48 13.23 -51.41 -0.68 -7.16 16 30 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 32 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 33 H 0.05 1.96 6.87 -2.39 -0.02 1.94 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.36 8.97 7.55 -89.70 -0.68 8.29 16 38 H 0.34 9.86 8.58 -89.70 -0.77 9.09 16 39 H 0.42 6.16 7.85 -92.71 -0.73 5.44 16 40 H 0.12 0.81 7.94 -2.39 -0.02 0.79 16 41 H 0.10 0.77 8.08 -2.39 -0.02 0.75 16 42 H 0.13 1.30 7.60 -2.91 -0.02 1.28 16 43 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 44 H 0.13 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.26 8.06 -2.91 -0.02 1.24 16 46 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 47 H 0.43 2.49 9.10 -74.06 -0.67 1.81 16 Total: -1.00 -80.60 396.34 0.27 -80.34 By element: Atomic # 1 Polarization: 30.92 SS G_CDS: -1.88 Total: 29.04 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 3.67 Total: -16.05 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -3.05 Total: -98.70 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.35 Total: -41.66 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Total: -80.60 0.27 -80.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118438526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.250 kcal (2) G-P(sol) polarization free energy of solvation -80.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 26.16 seconds