Wall clock time and date at job start Tue Mar 31 2020 21:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48494 * 109.47337 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.47308 * 30.00244 * 3 2 1 6 6 H 1.48505 * 109.46714 * 149.99629 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21281 * 120.00042 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99605 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46841 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47335 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.47386 * 180.02562 * 21 20 19 23 23 F 1.39892 * 109.47488 * 59.99833 * 22 21 20 24 24 F 1.39907 * 109.47025 * 180.02562 * 22 21 20 25 25 F 1.39903 * 109.46803 * 299.99472 * 22 21 20 26 26 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 27 27 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 29 29 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 30 30 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 31 31 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 32 32 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 33 33 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 34 34 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 35 35 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 36 36 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 37 37 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 38 38 H 1.08996 * 109.46903 * 299.99749 * 19 17 16 39 39 H 1.08995 * 109.47183 * 60.00072 * 19 17 16 40 40 H 1.09003 * 109.47214 * 300.00016 * 20 19 17 41 41 H 1.09004 * 109.47595 * 59.99747 * 20 19 17 42 42 H 1.09004 * 109.47012 * 299.99534 * 21 20 19 43 43 H 1.08998 * 109.47529 * 59.99542 * 21 20 19 44 44 H 1.08990 * 113.66878 * 265.09053 * 26 12 11 45 45 H 1.09000 * 113.66430 * 36.05678 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7002 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1225 -9.2230 2.6125 19 6 3.4541 -11.1920 1.4960 20 6 4.5326 -11.8326 2.3719 21 6 4.6053 -13.3320 2.0765 22 6 5.6835 -13.9728 2.9529 23 9 5.3652 -13.7781 4.3011 24 9 5.7503 -15.3439 2.6823 25 9 6.9212 -13.3825 2.6759 26 6 1.0599 -6.8787 1.0890 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 -0.0023 29 1 3.0653 -3.5642 -0.4088 30 1 1.5973 -5.1293 -1.5917 31 1 0.1782 -4.6962 -0.5422 32 1 1.1318 -4.1478 1.9482 33 1 2.9356 -4.3598 1.9065 34 1 2.9951 -7.1043 -0.6938 35 1 3.9799 -6.1903 0.5299 36 1 2.8043 -7.2489 2.4010 37 1 1.9071 -9.3338 0.4669 38 1 2.4897 -11.6516 1.7120 39 1 3.7020 -11.3441 0.4455 40 1 5.4970 -11.3729 2.1554 41 1 4.2853 -11.6805 3.4225 42 1 3.6411 -13.7921 2.2927 43 1 4.8529 -13.4839 1.0259 44 1 0.4691 -6.6421 1.9737 45 1 0.4936 -7.4251 0.3348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121816392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:41 Heat of formation + Delta-G solvation = -157.932410 kcal Electronic energy + Delta-G solvation = -27713.646220 eV Core-core repulsion = 23123.913194 eV Total energy + Delta-G solvation = -4589.733027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 23.63 seconds Orbital eigenvalues (eV) -50.50562 -48.01733 -47.97007 -40.64202 -39.39958 -36.07661 -35.33909 -33.69180 -32.26948 -30.17733 -29.39966 -25.80397 -25.32297 -25.19536 -24.07788 -22.75878 -21.83955 -20.66139 -20.05540 -18.97300 -18.72249 -18.16033 -17.73318 -17.05079 -16.90759 -16.39609 -16.25015 -15.29109 -14.99118 -14.91509 -14.72458 -14.46502 -14.38091 -14.26604 -14.13336 -14.10967 -14.01436 -13.55187 -13.20502 -12.93655 -12.83855 -12.58585 -12.41073 -12.32474 -11.96754 -11.91289 -11.64212 -11.42337 -11.28988 -11.20064 -10.86698 -10.76050 -10.33879 -10.08943 -9.98050 -9.80609 -9.70054 -9.39396 -9.12257 -8.85619 -6.95009 -5.77770 -3.06123 2.30861 2.38595 2.91966 3.36872 3.43430 3.48917 3.50477 3.57399 3.59099 4.22749 4.35839 4.46976 4.53590 4.57086 4.66218 4.75670 4.76606 4.79695 4.84585 4.88614 5.03661 5.37883 5.44018 5.44682 5.55375 5.65625 5.67653 5.78741 5.90179 5.92744 5.96028 6.08721 6.18347 6.24005 6.35325 6.40881 6.48811 6.64483 6.92634 7.13336 7.29747 7.70665 8.00237 8.41165 9.52240 10.10832 10.45193 11.44709 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.035421 B = 0.001530 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.301621 B =18299.823516 C =18682.353017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.168 3.832 11 C -0.136 4.136 12 C -0.101 4.101 13 C -0.142 4.142 14 C -0.124 4.124 15 C 0.122 3.878 16 N -0.719 5.719 17 C 0.510 3.490 18 O -0.538 6.538 19 C -0.138 4.138 20 C -0.111 4.111 21 C -0.167 4.167 22 C 0.452 3.548 23 F -0.183 7.183 24 F -0.187 7.187 25 F -0.182 7.182 26 C -0.131 4.131 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.400 0.600 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -31.891 1.607 32.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.351 5.351 10 C 0.056 3.944 11 C -0.175 4.175 12 C -0.102 4.102 13 C -0.183 4.183 14 C -0.163 4.163 15 C 0.018 3.982 16 N -0.370 5.370 17 C 0.296 3.704 18 O -0.415 6.415 19 C -0.178 4.178 20 C -0.149 4.149 21 C -0.205 4.205 22 C 0.398 3.602 23 F -0.164 7.164 24 F -0.169 7.169 25 F -0.164 7.164 26 C -0.169 4.169 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.129 0.871 43 H 0.129 0.871 44 H 0.092 0.908 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.235 -31.358 2.231 32.049 hybrid contribution -0.061 0.546 -0.208 0.588 sum 6.174 -30.812 2.023 31.489 Atomic orbital electron populations 1.69661 1.05130 1.25683 1.57680 1.24757 0.95523 0.97756 1.02926 0.86190 0.78703 0.83816 0.77502 1.21725 1.21777 1.20727 1.19323 0.91107 0.84280 1.42683 0.91097 1.42414 1.05721 0.99921 1.87053 1.21538 0.95267 0.84870 0.92702 1.23268 1.00568 0.97240 0.96396 1.22092 0.96203 0.92415 0.99539 1.23605 1.01348 0.93598 0.99763 1.23137 0.98356 0.96320 0.98497 1.22627 0.97677 0.77769 1.00120 1.46093 1.39109 1.09163 1.42600 1.20601 0.80109 0.88769 0.80907 1.90741 1.41564 1.75428 1.33766 1.21602 1.01269 0.92776 1.02174 1.21346 1.00827 0.90932 1.01837 1.22915 0.98127 0.98455 1.00986 1.20589 0.83190 0.76509 0.79953 1.93198 1.92631 1.94801 1.35780 1.93194 1.96684 1.33331 1.93656 1.93203 1.46012 1.83709 1.93474 1.23174 0.95539 0.96999 1.01176 0.93508 0.78131 0.90804 0.92294 0.90221 0.90128 0.92527 0.89943 0.90945 0.86838 0.76622 0.88459 0.88428 0.89566 0.89594 0.87127 0.87100 0.90850 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.81 5.40 -52.47 -0.28 -18.10 16 10 C 0.17 3.29 4.48 -66.95 -0.30 2.99 16 11 C -0.14 -2.14 7.59 -26.28 -0.20 -2.34 16 12 C -0.10 -1.37 1.11 -154.71 -0.17 -1.54 16 13 C -0.14 -2.42 7.64 -26.28 -0.20 -2.62 16 14 C -0.12 -1.47 7.64 -26.28 -0.20 -1.67 16 15 C 0.12 1.34 4.24 -66.95 -0.28 1.05 16 16 N -0.72 -5.89 5.35 -52.85 -0.28 -6.17 16 17 C 0.51 4.73 7.83 -10.98 -0.09 4.65 16 18 O -0.54 -7.54 15.58 5.56 0.09 -7.45 16 19 C -0.14 -0.64 5.70 -27.88 -0.16 -0.80 16 20 C -0.11 -0.65 4.26 -26.74 -0.11 -0.76 16 21 C -0.17 -0.60 5.26 -26.73 -0.14 -0.74 16 22 C 0.45 2.96 3.16 37.16 0.12 3.08 16 23 F -0.18 -1.48 16.80 2.25 0.04 -1.45 16 24 F -0.19 -1.34 17.32 2.25 0.04 -1.30 16 25 F -0.18 -1.50 16.80 2.25 0.04 -1.46 16 26 C -0.13 -1.42 7.59 -26.28 -0.20 -1.62 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.38 10.16 7.92 -40.82 -0.32 9.84 16 29 H 0.07 1.47 8.10 -51.93 -0.42 1.04 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.30 8.12 -51.93 -0.42 0.88 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.11 1.50 7.47 -51.92 -0.39 1.11 16 37 H 0.40 2.05 8.73 -40.82 -0.36 1.69 16 38 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 0.64 7.76 -51.93 -0.40 0.24 16 41 H 0.09 0.63 7.76 -51.93 -0.40 0.23 16 42 H 0.11 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -33.30 384.68 -7.96 -41.27 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.91 Total: 6.58 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.18 Total: -7.71 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.16 Total: -51.66 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: 0.09 Total: -7.45 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.11 Total: -4.20 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.30 -7.96 -41.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121816392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.666 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.64 seconds