Wall clock time and date at job start Tue Mar 31 2020 21:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99805 * 2 1 4 4 H 1.48494 * 109.47337 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.47308 * 30.00244 * 3 2 1 6 6 H 1.48505 * 109.46714 * 149.99629 * 3 2 1 7 7 C 1.38814 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99863 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99782 * 179.97438 * 9 7 2 11 11 C 1.53957 * 113.58030 * 205.00320 * 10 9 7 12 12 C 1.52917 * 86.77928 * 220.66444 * 11 10 9 13 13 C 1.52909 * 88.04253 * 24.89691 * 12 11 10 14 14 C 1.52910 * 121.13486 * 259.17796 * 12 11 10 15 15 C 1.53949 * 86.78077 * 209.38575 * 14 12 11 16 16 N 1.46498 * 113.58269 * 139.33921 * 15 14 12 17 17 C 1.34781 * 119.99983 * 107.27819 * 16 15 14 18 18 O 1.21281 * 120.00042 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99605 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.46841 * 179.97438 * 19 17 16 21 21 C 1.52995 * 109.47335 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.47386 * 180.02562 * 21 20 19 23 23 F 1.39892 * 109.47488 * 59.99833 * 22 21 20 24 24 F 1.39907 * 109.47025 * 180.02562 * 22 21 20 25 25 F 1.39903 * 109.46803 * 299.99472 * 22 21 20 26 26 C 1.52905 * 121.13340 * 150.61497 * 12 11 10 27 27 H 0.97005 * 120.00007 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00271 * 0.02562 * 9 7 2 29 29 H 1.09001 * 112.88003 * 336.14586 * 10 9 7 30 30 H 1.08997 * 113.66354 * 106.19621 * 11 10 9 31 31 H 1.09002 * 113.65722 * 335.13352 * 11 10 9 32 32 H 1.09001 * 113.66026 * 89.57323 * 13 12 11 33 33 H 1.08998 * 113.66179 * 220.53611 * 13 12 11 34 34 H 1.09006 * 113.66074 * 323.85230 * 14 12 11 35 35 H 1.08994 * 113.66448 * 94.91195 * 14 12 11 36 36 H 1.09009 * 113.57633 * 270.12923 * 15 14 12 37 37 H 0.97003 * 119.99770 * 287.27692 * 16 15 14 38 38 H 1.08996 * 109.46903 * 299.99749 * 19 17 16 39 39 H 1.08995 * 109.47183 * 60.00072 * 19 17 16 40 40 H 1.09003 * 109.47214 * 300.00016 * 20 19 17 41 41 H 1.09004 * 109.47595 * 59.99747 * 20 19 17 42 42 H 1.09004 * 109.47012 * 299.99534 * 21 20 19 43 43 H 1.08998 * 109.47529 * 59.99542 * 21 20 19 44 44 H 1.08990 * 113.66878 * 265.09053 * 26 12 11 45 45 H 1.09000 * 113.66430 * 36.05678 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7002 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.2585 -4.8290 -0.6002 12 6 1.8333 -5.6841 0.5298 13 6 2.0030 -4.4009 1.3439 14 6 3.0117 -6.6276 0.2863 15 6 2.4295 -7.5045 1.4098 16 7 2.4983 -8.9404 1.1278 17 6 3.3830 -9.7149 1.7866 18 8 4.1225 -9.2230 2.6125 19 6 3.4541 -11.1920 1.4960 20 6 4.5326 -11.8326 2.3719 21 6 4.6053 -13.3320 2.0765 22 6 5.6835 -13.9728 2.9529 23 9 5.3652 -13.7781 4.3011 24 9 5.7503 -15.3439 2.6823 25 9 6.9212 -13.3825 2.6759 26 6 1.0599 -6.8787 1.0890 27 1 -0.4850 0.8401 -0.0004 28 1 0.3556 -2.3881 -0.0023 29 1 3.0653 -3.5642 -0.4088 30 1 1.5973 -5.1293 -1.5917 31 1 0.1782 -4.6962 -0.5422 32 1 1.1318 -4.1478 1.9482 33 1 2.9356 -4.3598 1.9065 34 1 2.9951 -7.1043 -0.6938 35 1 3.9799 -6.1903 0.5299 36 1 2.8043 -7.2489 2.4010 37 1 1.9071 -9.3338 0.4669 38 1 2.4897 -11.6516 1.7120 39 1 3.7020 -11.3441 0.4455 40 1 5.4970 -11.3729 2.1554 41 1 4.2853 -11.6805 3.4225 42 1 3.6411 -13.7921 2.2927 43 1 4.8529 -13.4839 1.0259 44 1 0.4691 -6.6421 1.9737 45 1 0.4936 -7.4251 0.3348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121816392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:37:13 Heat of formation + Delta-G solvation = -179.315530 kcal Electronic energy + Delta-G solvation = -27714.573462 eV Core-core repulsion = 23123.913194 eV Total energy + Delta-G solvation = -4590.660268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 5.79 seconds Orbital eigenvalues (eV) -51.04483 -48.55455 -48.54526 -41.65035 -40.31278 -37.28905 -35.87102 -35.23034 -33.59875 -31.51593 -30.37671 -26.74596 -26.57543 -26.30969 -25.59241 -23.66631 -22.55386 -21.46762 -21.29346 -19.50256 -19.42628 -19.24274 -18.75276 -18.50061 -17.58211 -17.12656 -16.95592 -16.77099 -16.04605 -15.89553 -15.59990 -15.46694 -15.19725 -15.06858 -15.00182 -14.89309 -14.69961 -14.68566 -14.40734 -13.83359 -13.64177 -13.59126 -13.20219 -13.07290 -12.98796 -12.97114 -12.83933 -12.78851 -12.39190 -12.34479 -12.30961 -12.14577 -11.84260 -11.79346 -11.26449 -11.04636 -10.96024 -10.81124 -10.62541 -9.93803 -8.97414 -7.95315 -5.23062 1.46548 1.47901 1.56397 1.70966 1.86153 2.29414 2.55996 2.94232 3.10039 3.15457 3.36200 3.52094 3.57023 3.68539 3.77375 3.87331 4.00368 4.01369 4.07954 4.29020 4.30321 4.37645 4.53511 4.54714 4.61972 4.62927 4.77342 4.82105 4.85350 4.95500 5.01897 5.06117 5.07723 5.12029 5.16463 5.24048 5.30292 5.44490 5.57562 5.68691 5.71590 6.27623 6.67654 7.33297 7.37643 8.11537 8.34353 9.27925 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.035421 B = 0.001530 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.301621 B =18299.823516 C =18682.353017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.728 5.728 10 C 0.145 3.855 11 C -0.121 4.121 12 C -0.091 4.091 13 C -0.140 4.140 14 C -0.119 4.119 15 C 0.128 3.872 16 N -0.705 5.705 17 C 0.503 3.497 18 O -0.595 6.595 19 C -0.126 4.126 20 C -0.112 4.112 21 C -0.153 4.153 22 C 0.443 3.557 23 F -0.196 7.196 24 F -0.191 7.191 25 F -0.197 7.197 26 C -0.116 4.116 27 H 0.251 0.749 28 H 0.374 0.626 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.420 0.580 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.069 0.931 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -34.480 0.065 34.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.366 5.366 10 C 0.035 3.965 11 C -0.160 4.160 12 C -0.092 4.092 13 C -0.181 4.181 14 C -0.157 4.157 15 C 0.022 3.978 16 N -0.357 5.357 17 C 0.291 3.709 18 O -0.476 6.476 19 C -0.165 4.165 20 C -0.150 4.150 21 C -0.190 4.190 22 C 0.389 3.611 23 F -0.178 7.178 24 F -0.172 7.172 25 F -0.178 7.178 26 C -0.154 4.154 27 H 0.060 0.940 28 H 0.206 0.794 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.125 0.875 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.258 0.742 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.087 0.913 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.886 -34.017 0.663 34.529 hybrid contribution 0.123 1.287 0.308 1.329 sum 6.009 -32.730 0.972 33.291 Atomic orbital electron populations 1.69809 1.06530 1.26017 1.59609 1.25546 0.96403 1.01026 1.03828 0.85164 0.77653 0.79638 0.77469 1.21265 1.22176 1.19715 1.19703 0.91457 0.85602 1.40978 0.90866 1.42588 1.05354 1.01041 1.87581 1.21934 0.95351 0.84140 0.95040 1.23091 0.99731 0.95255 0.97875 1.21904 0.98075 0.92044 0.97153 1.23403 1.00443 0.95802 0.98460 1.23169 0.96714 0.95806 1.00032 1.22247 0.97408 0.79618 0.98478 1.45916 1.39200 1.07804 1.42766 1.21492 0.78970 0.90687 0.79738 1.90730 1.43789 1.76777 1.36275 1.21636 1.02432 0.88871 1.03602 1.21273 1.00224 0.92565 1.00969 1.22939 0.98150 0.96366 1.01591 1.21167 0.83536 0.76488 0.79895 1.93170 1.92666 1.94865 1.37104 1.93183 1.96718 1.33721 1.93607 1.93174 1.47234 1.83929 1.93499 1.23139 0.95393 0.95228 1.01615 0.94028 0.79396 0.91391 0.90591 0.90682 0.91647 0.93094 0.87477 0.92546 0.89647 0.74234 0.85109 0.85149 0.91891 0.91839 0.84456 0.84489 0.91250 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 2 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 3 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 4 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.25 -13.87 9.97 84.03 0.84 -13.03 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.73 -37.16 5.40 -319.92 -1.73 -38.88 16 10 C 0.14 5.72 4.48 45.63 0.20 5.92 16 11 C -0.12 -3.63 7.59 30.89 0.23 -3.40 16 12 C -0.09 -2.30 1.11 -52.31 -0.06 -2.36 16 13 C -0.14 -4.85 7.64 30.88 0.24 -4.61 16 14 C -0.12 -2.55 7.64 30.88 0.24 -2.32 16 15 C 0.13 2.56 4.24 45.63 0.19 2.75 16 16 N -0.71 -9.31 5.35 -439.50 -2.35 -11.66 16 17 C 0.50 8.26 7.83 87.66 0.69 8.94 16 18 O -0.60 -16.72 15.58 -3.03 -0.05 -16.77 16 19 C -0.13 -0.69 5.70 29.85 0.17 -0.52 16 20 C -0.11 -1.11 4.26 30.59 0.13 -0.98 16 21 C -0.15 -0.65 5.26 30.59 0.16 -0.49 16 22 C 0.44 5.32 3.16 71.98 0.23 5.54 16 23 F -0.20 -3.15 16.80 44.97 0.76 -2.40 16 24 F -0.19 -2.46 17.32 44.97 0.78 -1.68 16 25 F -0.20 -3.18 16.80 44.97 0.76 -2.43 16 26 C -0.12 -2.19 7.59 30.88 0.23 -1.96 16 27 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 28 H 0.37 20.33 7.92 -92.71 -0.73 19.59 16 29 H 0.07 2.73 8.10 -2.39 -0.02 2.71 16 30 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 2.36 8.12 -2.39 -0.02 2.34 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 2.26 7.47 -2.38 -0.02 2.24 16 37 H 0.42 2.25 8.73 -92.71 -0.81 1.44 16 38 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.06 0.91 7.76 -2.39 -0.02 0.90 16 41 H 0.06 0.91 7.76 -2.38 -0.02 0.89 16 42 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 43 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.11 1.52 8.12 -2.39 -0.02 1.50 16 Total: -1.00 -76.64 384.68 3.91 -72.74 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -0.52 Total: 22.19 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.96 Total: -10.45 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -3.80 Total: -109.92 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.05 Total: -16.77 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 2.29 Total: -6.50 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -76.64 3.91 -72.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121816392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.580 kcal (2) G-P(sol) polarization free energy of solvation -76.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.79 seconds