Wall clock time and date at job start Wed Apr 1 2020 00:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86791 * 119.99995 * 2 1 4 4 H 1.48504 * 109.47135 * 270.00345 * 3 2 1 5 5 H 1.48502 * 109.47165 * 29.99826 * 3 2 1 6 6 H 1.48504 * 109.47188 * 150.00129 * 3 2 1 7 7 C 1.38655 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00223 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99548 * 179.97438 * 7 2 1 10 10 C 1.35752 * 116.99899 * 185.05551 * 9 7 2 11 11 C 1.38880 * 120.06692 * 354.47184 * 10 9 7 12 12 C 1.38103 * 119.93121 * 179.97438 * 11 10 9 13 13 C 1.38302 * 120.06643 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.93198 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47181 * 90.00123 * 14 13 12 16 16 C 1.46901 * 111.00165 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47053 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46646 * 179.97438 * 17 16 15 19 19 C 1.34781 * 119.99514 * 180.02562 * 18 17 16 20 20 O 1.21280 * 120.00249 * 359.97438 * 19 18 17 21 21 C 1.50697 * 119.99681 * 180.02562 * 19 18 17 22 22 H 1.09002 * 109.99417 * 56.08178 * 21 19 18 23 23 C 1.54102 * 109.87723 * 294.99633 * 21 19 18 24 24 C 1.54814 * 104.30232 * 238.48072 * 23 21 19 25 25 C 1.55226 * 101.99078 * 339.25920 * 24 23 21 26 26 O 1.43745 * 109.87986 * 177.16269 * 21 19 18 27 27 C 1.38304 * 120.13747 * 0.23366 * 13 12 11 28 28 C 1.38095 * 120.07048 * 359.49423 * 27 13 12 29 29 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03876 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96951 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.46571 * 330.00113 * 14 13 12 33 33 H 1.09000 * 109.47435 * 210.00200 * 14 13 12 34 34 H 1.00910 * 110.99954 * 303.95290 * 15 14 13 35 35 H 1.08999 * 109.47520 * 59.99424 * 16 15 14 36 36 H 1.09005 * 109.46646 * 299.99995 * 16 15 14 37 37 H 1.09000 * 109.47069 * 60.00192 * 17 16 15 38 38 H 1.08992 * 109.47532 * 299.99328 * 17 16 15 39 39 H 0.96992 * 120.00548 * 0.02562 * 18 17 16 40 40 H 1.08995 * 110.49003 * 357.22331 * 23 21 19 41 41 H 1.08996 * 110.48866 * 119.73826 * 23 21 19 42 42 H 1.09002 * 110.90892 * 97.38800 * 24 23 21 43 43 H 1.09002 * 110.90410 * 220.98421 * 24 23 21 44 44 H 1.08994 * 110.52090 * 278.39005 * 25 24 23 45 45 H 1.08998 * 110.64157 * 155.43296 * 25 24 23 46 46 H 1.08004 * 119.96469 * 179.72250 * 27 13 12 47 47 H 1.08002 * 120.03893 * 180.25561 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5744 -0.0953 12 6 3.8532 -4.7986 -0.2049 13 6 5.2294 -4.8613 -0.3270 14 6 5.9135 -6.1988 -0.4459 15 7 6.0164 -6.5719 -1.8629 16 6 6.6792 -7.8737 -2.0178 17 6 6.7671 -8.2277 -3.5037 18 7 7.4286 -9.5258 -3.6580 19 6 7.6182 -10.0434 -4.8880 20 8 7.2408 -9.4349 -5.8668 21 6 8.2981 -11.3788 -5.0468 22 1 7.7683 -12.1376 -4.4708 23 6 9.7597 -11.2829 -4.5677 24 6 10.5954 -11.6892 -5.8060 25 6 9.5574 -12.4741 -6.6522 26 8 8.3269 -11.7507 -6.4350 27 6 5.9795 -3.6994 -0.3347 28 6 5.3551 -2.4720 -0.2311 29 1 -0.4850 0.8400 0.0004 30 1 2.1487 -3.5261 0.0004 31 1 3.2706 -5.7078 -0.1946 32 1 5.3334 -6.9522 0.0871 33 1 6.9120 -6.1359 -0.0133 34 1 5.1084 -6.5741 -2.3032 35 1 6.1042 -8.6386 -1.4958 36 1 7.6830 -7.8228 -1.5960 37 1 7.3420 -7.4629 -4.0259 38 1 5.7632 -8.2788 -3.9251 39 1 7.7302 -10.0126 -2.8752 40 1 9.9961 -10.2626 -4.2659 41 1 9.9373 -11.9743 -3.7440 42 1 10.9486 -10.8087 -6.3428 43 1 11.4300 -12.3289 -5.5190 44 1 9.4684 -13.4993 -6.2930 45 1 9.8309 -12.4582 -7.7072 46 1 7.0544 -3.7518 -0.4256 47 1 5.9411 -1.5648 -0.2413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123144453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:16 Heat of formation + Delta-G solvation = -81.358564 kcal Electronic energy + Delta-G solvation = -26752.223934 eV Core-core repulsion = 22707.668138 eV Total energy + Delta-G solvation = -4044.555795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.08 seconds Orbital eigenvalues (eV) -40.72262 -39.26874 -38.81591 -37.42435 -36.21391 -34.55874 -32.71268 -32.41108 -31.11290 -30.27954 -29.97335 -27.83366 -25.57491 -24.37086 -23.54369 -22.38070 -22.28595 -22.05906 -20.75379 -20.39591 -18.08450 -17.89848 -17.33714 -17.08983 -16.66697 -16.25385 -15.67652 -15.34206 -15.21784 -14.92398 -14.64109 -14.33231 -14.22650 -14.04506 -13.91658 -13.77659 -13.56475 -13.36772 -12.80527 -12.66440 -12.39432 -12.35871 -12.19268 -12.17089 -11.84137 -11.77278 -11.61415 -11.49482 -11.29345 -10.79678 -10.77064 -10.66851 -10.60132 -10.16752 -9.86902 -9.44070 -9.40523 -8.88921 -8.56059 -8.27279 -7.35261 -6.43228 -4.09964 2.10494 2.13235 2.24093 2.49598 3.21417 3.25577 3.39667 3.47005 3.88462 4.08586 4.21808 4.22713 4.25632 4.40967 4.57945 4.61471 4.62562 4.79545 4.82423 4.85707 5.00335 5.09274 5.11595 5.14713 5.20233 5.23359 5.30087 5.31407 5.45825 5.59764 5.62576 5.68292 5.72155 5.78361 6.00549 6.10764 6.23389 6.31780 6.55138 6.75804 6.83884 7.02493 7.08862 7.19419 7.24850 7.32521 7.59532 7.78097 7.85940 8.02052 8.91982 9.54121 10.64310 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.001479 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.851334 B =18922.885776 C =19126.353232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.066 4.066 13 C -0.180 4.180 14 C 0.119 3.881 15 N -0.682 5.682 16 C 0.049 3.951 17 C 0.120 3.880 18 N -0.728 5.728 19 C 0.511 3.489 20 O -0.515 6.515 21 C 0.061 3.939 22 H 0.095 0.905 23 C -0.148 4.148 24 C -0.154 4.154 25 C 0.043 3.957 26 O -0.347 6.347 27 C -0.053 4.053 28 C -0.194 4.194 29 H 0.280 0.720 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.346 0.654 35 H 0.033 0.967 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.577 -25.612 -4.962 33.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.122 6.122 10 C 0.110 3.890 11 C -0.241 4.241 12 C -0.085 4.085 13 C -0.181 4.181 14 C -0.008 4.008 15 N -0.314 5.314 16 C -0.081 4.081 17 C -0.004 4.004 18 N -0.383 5.383 19 C 0.296 3.704 20 O -0.389 6.389 21 C -0.001 4.001 22 H 0.113 0.887 23 C -0.186 4.186 24 C -0.192 4.192 25 C -0.033 4.033 26 O -0.265 6.265 27 C -0.072 4.072 28 C -0.213 4.213 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.165 0.835 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.233 0.767 40 H 0.102 0.898 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.116 0.884 46 H 0.132 0.868 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.574 -24.375 -5.932 32.444 hybrid contribution -0.384 -0.229 0.880 0.987 sum 20.190 -24.605 -5.052 32.226 Atomic orbital electron populations 1.69647 1.05575 1.28526 1.47896 1.24471 0.95031 0.98855 0.95615 0.86176 0.80306 0.81388 0.79006 1.19843 1.20772 1.18367 1.20769 0.76875 0.96638 1.52296 0.87630 1.83575 1.22641 1.25814 1.80124 1.19153 0.91748 0.85477 0.92638 1.21239 1.01089 0.91838 1.09933 1.20643 0.93468 0.96660 0.97724 1.19146 0.93365 0.93825 1.11811 1.20627 0.99469 0.93540 0.87208 1.60458 1.27590 1.27688 1.15682 1.22070 1.00306 0.91043 0.94709 1.21311 0.98393 0.84061 0.96599 1.45820 1.62005 1.22436 1.08021 1.20439 0.79587 0.87141 0.83259 1.90761 1.48799 1.61109 1.38196 1.22631 0.96976 0.94631 0.85870 0.88710 1.22961 0.92507 1.03863 0.99302 1.23191 0.98644 1.01397 0.95978 1.23704 0.83085 0.95168 1.01373 1.89036 1.39973 1.74061 1.23433 1.20465 0.98453 0.91095 0.97168 1.20226 0.91936 0.97951 1.11229 0.91027 0.84991 0.87622 0.95137 0.90940 0.83518 0.94847 0.90489 0.90220 0.91303 0.76666 0.89772 0.89396 0.90067 0.89596 0.91725 0.88367 0.86849 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 13.96 55.48 0.77 -24.55 16 2 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 3 Si 0.91 21.67 28.62 -169.99 -4.86 16.81 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.39 -10.97 9.95 30.89 0.31 -10.66 16 8 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 9 O -0.22 -5.71 8.59 0.04 0.00 -5.71 16 10 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 11 C -0.22 -4.69 9.17 -39.39 -0.36 -5.05 16 12 C -0.07 -1.14 9.69 -39.61 -0.38 -1.53 16 13 C -0.18 -2.82 5.40 -104.57 -0.56 -3.38 16 14 C 0.12 1.41 5.81 -4.98 -0.03 1.38 16 15 N -0.68 -7.48 6.49 -115.06 -0.75 -8.22 16 16 C 0.05 0.39 5.80 -3.82 -0.02 0.36 16 17 C 0.12 1.07 5.93 -4.04 -0.02 1.05 16 18 N -0.73 -5.28 5.53 -60.29 -0.33 -5.61 16 19 C 0.51 5.20 6.95 -10.99 -0.08 5.13 16 20 O -0.51 -7.98 16.53 -14.02 -0.23 -8.21 16 21 C 0.06 0.44 3.84 -27.31 -0.10 0.33 16 22 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 23 C -0.15 -0.64 6.61 -25.20 -0.17 -0.81 16 24 C -0.15 -0.67 7.17 -24.60 -0.18 -0.85 16 25 C 0.04 0.24 7.72 38.34 0.30 0.54 16 26 O -0.35 -3.47 10.74 -54.81 -0.59 -4.06 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 28 C -0.19 -3.80 9.99 -39.40 -0.39 -4.20 16 29 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.13 2.95 5.64 -52.49 -0.30 2.65 16 31 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 34 H 0.35 3.93 8.72 -39.29 -0.34 3.58 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.40 1.54 8.47 -40.82 -0.35 1.19 16 40 H 0.08 0.39 7.69 -51.93 -0.40 0.00 16 41 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 47 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -34.08 393.67 -9.64 -43.72 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.14 Total: 3.71 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.44 Total: -13.81 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.31 Total: -38.38 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.82 Total: -17.98 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.86 Total: 16.81 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.08 -9.64 -43.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123144453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.639 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.08 seconds