Wall clock time and date at job start Wed Apr 1 2020 00:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86791 * 119.99995 * 2 1 4 4 H 1.48504 * 109.47135 * 270.00345 * 3 2 1 5 5 H 1.48502 * 109.47165 * 29.99826 * 3 2 1 6 6 H 1.48504 * 109.47188 * 150.00129 * 3 2 1 7 7 C 1.38655 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00223 * 0.02562 * 7 2 1 9 9 O 1.34831 * 119.99548 * 179.97438 * 7 2 1 10 10 C 1.35752 * 116.99899 * 185.05551 * 9 7 2 11 11 C 1.38880 * 120.06692 * 354.47184 * 10 9 7 12 12 C 1.38103 * 119.93121 * 179.97438 * 11 10 9 13 13 C 1.38302 * 120.06643 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.93198 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.47181 * 90.00123 * 14 13 12 16 16 C 1.46901 * 111.00165 * 180.02562 * 15 14 13 17 17 C 1.52998 * 109.47053 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46646 * 179.97438 * 17 16 15 19 19 C 1.34781 * 119.99514 * 180.02562 * 18 17 16 20 20 O 1.21280 * 120.00249 * 359.97438 * 19 18 17 21 21 C 1.50697 * 119.99681 * 180.02562 * 19 18 17 22 22 H 1.09002 * 109.99417 * 56.08178 * 21 19 18 23 23 C 1.54102 * 109.87723 * 294.99633 * 21 19 18 24 24 C 1.54814 * 104.30232 * 238.48072 * 23 21 19 25 25 C 1.55226 * 101.99078 * 339.25920 * 24 23 21 26 26 O 1.43745 * 109.87986 * 177.16269 * 21 19 18 27 27 C 1.38304 * 120.13747 * 0.23366 * 13 12 11 28 28 C 1.38095 * 120.07048 * 359.49423 * 27 13 12 29 29 H 0.96998 * 119.99933 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.03876 * 359.97438 * 11 10 9 31 31 H 1.07993 * 119.96951 * 179.97438 * 12 11 10 32 32 H 1.09001 * 109.46571 * 330.00113 * 14 13 12 33 33 H 1.09000 * 109.47435 * 210.00200 * 14 13 12 34 34 H 1.00910 * 110.99954 * 303.95290 * 15 14 13 35 35 H 1.08999 * 109.47520 * 59.99424 * 16 15 14 36 36 H 1.09005 * 109.46646 * 299.99995 * 16 15 14 37 37 H 1.09000 * 109.47069 * 60.00192 * 17 16 15 38 38 H 1.08992 * 109.47532 * 299.99328 * 17 16 15 39 39 H 0.96992 * 120.00548 * 0.02562 * 18 17 16 40 40 H 1.08995 * 110.49003 * 357.22331 * 23 21 19 41 41 H 1.08996 * 110.48866 * 119.73826 * 23 21 19 42 42 H 1.09002 * 110.90892 * 97.38800 * 24 23 21 43 43 H 1.09002 * 110.90410 * 220.98421 * 24 23 21 44 44 H 1.08994 * 110.52090 * 278.39005 * 25 24 23 45 45 H 1.08998 * 110.64157 * 155.43296 * 25 24 23 46 46 H 1.08004 * 119.96469 * 179.72250 * 27 13 12 47 47 H 1.08002 * 120.03893 * 180.25561 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6526 0.7000 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1361 -0.0014 9 8 3.3571 -1.2008 -0.0011 10 6 3.9734 -2.4056 -0.1082 11 6 3.2234 -3.5744 -0.0953 12 6 3.8532 -4.7986 -0.2049 13 6 5.2294 -4.8613 -0.3270 14 6 5.9135 -6.1988 -0.4459 15 7 6.0164 -6.5719 -1.8629 16 6 6.6792 -7.8737 -2.0178 17 6 6.7671 -8.2277 -3.5037 18 7 7.4286 -9.5258 -3.6580 19 6 7.6182 -10.0434 -4.8880 20 8 7.2408 -9.4349 -5.8668 21 6 8.2981 -11.3788 -5.0468 22 1 7.7683 -12.1376 -4.4708 23 6 9.7597 -11.2829 -4.5677 24 6 10.5954 -11.6892 -5.8060 25 6 9.5574 -12.4741 -6.6522 26 8 8.3269 -11.7507 -6.4350 27 6 5.9795 -3.6994 -0.3347 28 6 5.3551 -2.4720 -0.2311 29 1 -0.4850 0.8400 0.0004 30 1 2.1487 -3.5261 0.0004 31 1 3.2706 -5.7078 -0.1946 32 1 5.3334 -6.9522 0.0871 33 1 6.9120 -6.1359 -0.0133 34 1 5.1084 -6.5741 -2.3032 35 1 6.1042 -8.6386 -1.4958 36 1 7.6830 -7.8228 -1.5960 37 1 7.3420 -7.4629 -4.0259 38 1 5.7632 -8.2788 -3.9251 39 1 7.7302 -10.0126 -2.8752 40 1 9.9961 -10.2626 -4.2659 41 1 9.9373 -11.9743 -3.7440 42 1 10.9486 -10.8087 -6.3428 43 1 11.4300 -12.3289 -5.5190 44 1 9.4684 -13.4993 -6.2930 45 1 9.8309 -12.4582 -7.7072 46 1 7.0544 -3.7518 -0.4256 47 1 5.9411 -1.5648 -0.2413 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123144453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:06 Heat of formation + Delta-G solvation = -106.693947 kcal Electronic energy + Delta-G solvation = -26753.322558 eV Core-core repulsion = 22707.668138 eV Total energy + Delta-G solvation = -4045.654420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.94 seconds Orbital eigenvalues (eV) -41.36728 -40.89560 -39.47553 -38.81154 -37.29332 -35.48299 -34.44688 -33.17992 -32.09040 -31.77464 -30.80086 -28.82794 -27.32788 -25.36612 -24.35450 -23.65861 -23.03625 -22.68763 -21.87318 -21.41530 -19.82364 -19.11976 -18.66504 -17.65866 -17.33944 -17.09490 -16.59546 -16.49398 -16.20761 -15.95054 -15.82455 -15.69483 -15.45051 -15.21796 -15.02790 -14.58618 -14.54416 -14.42013 -14.32172 -14.14456 -13.93522 -13.53206 -13.05284 -12.78872 -12.68303 -12.63146 -12.52374 -12.35031 -12.32616 -12.18302 -12.10691 -11.90182 -11.87096 -11.26916 -11.18237 -10.90694 -10.55384 -10.19490 -9.78752 -9.39064 -8.97595 -8.50594 -6.23095 0.59014 0.62826 1.30794 1.34977 1.49847 1.51306 1.84391 2.27585 2.74017 2.97765 3.05492 3.16965 3.43052 3.57458 3.74566 3.88641 3.89662 4.02589 4.04070 4.08385 4.14948 4.22531 4.26807 4.42127 4.48366 4.53013 4.60569 4.72431 4.75730 4.78023 4.82744 4.91321 4.92945 4.96773 4.99958 5.02176 5.14276 5.28009 5.32270 5.37956 5.58908 5.76883 5.78898 5.81625 5.91715 6.05615 6.27311 6.38469 6.49561 6.83949 7.18433 7.59000 8.61018 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028774 B = 0.001479 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.851334 B =18922.885776 C =19126.353232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.080 0.920 9 O -0.247 6.247 10 C 0.119 3.881 11 C -0.240 4.240 12 C -0.066 4.066 13 C -0.152 4.152 14 C 0.124 3.876 15 N -0.697 5.697 16 C 0.060 3.940 17 C 0.124 3.876 18 N -0.707 5.707 19 C 0.505 3.495 20 O -0.581 6.581 21 C 0.059 3.941 22 H 0.124 0.876 23 C -0.141 4.141 24 C -0.153 4.153 25 C 0.035 3.965 26 O -0.392 6.392 27 C -0.049 4.049 28 C -0.195 4.195 29 H 0.284 0.716 30 H 0.105 0.895 31 H 0.134 0.866 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.342 0.658 35 H 0.054 0.946 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.051 0.949 39 H 0.420 0.580 40 H 0.079 0.921 41 H 0.124 0.876 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.096 0.904 46 H 0.152 0.848 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.351 -28.441 -3.762 37.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.098 0.902 9 O -0.155 6.155 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.085 4.085 13 C -0.153 4.153 14 C -0.004 4.004 15 N -0.329 5.329 16 C -0.069 4.069 17 C 0.000 4.000 18 N -0.362 5.362 19 C 0.291 3.709 20 O -0.459 6.459 21 C -0.002 4.002 22 H 0.141 0.859 23 C -0.179 4.179 24 C -0.191 4.191 25 C -0.040 4.040 26 O -0.311 6.311 27 C -0.067 4.067 28 C -0.215 4.215 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.160 0.840 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.258 0.742 40 H 0.097 0.903 41 H 0.142 0.858 42 H 0.082 0.918 43 H 0.131 0.869 44 H 0.105 0.895 45 H 0.114 0.886 46 H 0.170 0.830 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 24.400 -27.272 -4.684 36.893 hybrid contribution -1.345 0.278 0.457 1.448 sum 23.055 -26.993 -4.227 35.750 Atomic orbital electron populations 1.69731 1.06884 1.29571 1.50219 1.25279 0.95886 1.02146 0.95543 0.85215 0.78812 0.77444 0.79219 1.19234 1.19100 1.18698 1.20705 0.78151 0.96092 1.52633 0.90202 1.83515 1.21200 1.27610 1.83137 1.19721 0.93289 0.85085 0.94953 1.21263 1.00077 0.93352 1.11190 1.20953 0.94761 0.96023 0.96741 1.19708 0.92621 0.95962 1.07010 1.20645 1.00449 0.91215 0.88090 1.60384 1.27625 1.29892 1.14950 1.22023 1.01255 0.90039 0.93597 1.21140 0.97168 0.84297 0.97403 1.45618 1.60719 1.21730 1.08155 1.21193 0.78720 0.87976 0.82993 1.90729 1.51740 1.63077 1.40377 1.22867 0.98855 0.93137 0.85379 0.85877 1.23017 0.90126 1.04630 1.00136 1.23211 0.99116 1.01078 0.95674 1.23938 0.82124 0.96079 1.01896 1.88993 1.42038 1.74862 1.25200 1.20945 1.00422 0.89971 0.95350 1.20551 0.90526 0.99948 1.10426 0.90595 0.87659 0.84796 0.93288 0.88702 0.83986 0.92807 0.88590 0.92428 0.93078 0.74189 0.90257 0.85788 0.91754 0.86881 0.89520 0.88559 0.83017 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.72 13.96 21.61 0.30 -55.42 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 46.06 28.62 68.60 1.96 48.03 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.40 -23.87 9.95 67.92 0.68 -23.19 16 8 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 9 O -0.25 -13.62 8.59 -22.77 -0.20 -13.82 16 10 C 0.12 5.58 6.65 22.58 0.15 5.73 16 11 C -0.24 -10.47 9.17 22.39 0.21 -10.27 16 12 C -0.07 -2.18 9.69 22.25 0.22 -1.97 16 13 C -0.15 -4.21 5.40 -19.83 -0.11 -4.32 16 14 C 0.12 2.27 5.81 85.56 0.50 2.77 16 15 N -0.70 -12.50 6.49 -517.93 -3.36 -15.86 16 16 C 0.06 0.70 5.80 86.30 0.50 1.20 16 17 C 0.12 2.00 5.93 86.38 0.51 2.52 16 18 N -0.71 -8.62 5.53 -463.06 -2.56 -11.18 16 19 C 0.50 9.86 6.95 87.66 0.61 10.47 16 20 O -0.58 -18.65 16.53 15.69 0.26 -18.39 16 21 C 0.06 0.73 3.84 30.22 0.12 0.84 16 22 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 23 C -0.14 -0.76 6.61 31.59 0.21 -0.55 16 24 C -0.15 -0.98 7.17 31.98 0.23 -0.75 16 25 C 0.04 0.35 7.72 72.75 0.56 0.91 16 26 O -0.39 -7.64 10.74 -130.26 -1.40 -9.04 16 27 C -0.05 -1.44 9.69 22.25 0.22 -1.23 16 28 C -0.20 -7.45 9.99 22.39 0.22 -7.23 16 29 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.11 5.11 5.64 -2.91 -0.02 5.09 16 31 H 0.13 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.05 0.78 8.08 -2.39 -0.02 0.76 16 33 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.34 6.75 8.72 -89.69 -0.78 5.97 16 35 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.42 1.57 8.47 -92.71 -0.79 0.78 16 40 H 0.08 0.52 7.69 -2.39 -0.02 0.50 16 41 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.15 3.43 8.06 -2.91 -0.02 3.40 16 47 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -81.86 393.67 -0.28 -82.15 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.57 Total: 17.56 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: 5.28 Total: -24.03 kcal Atomic # 7 Polarization: -76.83 SS G_CDS: -5.62 Total: -82.45 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.33 Total: -41.25 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.96 Total: 48.03 kcal Total: -81.86 -0.28 -82.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123144453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.548 kcal (2) G-P(sol) polarization free energy of solvation -81.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.94 seconds