Wall clock time and date at job start Wed Apr 1 2020 00:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86797 * 120.00316 * 2 1 4 4 H 1.48502 * 109.47089 * 270.00753 * 3 2 1 5 5 H 1.48500 * 109.46978 * 29.99983 * 3 2 1 6 6 H 1.48494 * 109.47512 * 150.00211 * 3 2 1 7 7 C 1.38652 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99657 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00549 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00220 * 185.05491 * 9 7 2 11 11 C 1.38878 * 120.06982 * 354.46705 * 10 9 7 12 12 C 1.38101 * 119.92958 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07021 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93195 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47104 * 90.00151 * 14 13 12 16 16 C 1.46895 * 110.99774 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47088 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47318 * 179.97438 * 17 16 15 19 19 C 1.34783 * 119.99863 * 179.97438 * 18 17 16 20 20 O 1.21274 * 120.00455 * 359.97438 * 19 18 17 21 21 C 1.50706 * 119.99690 * 180.02562 * 19 18 17 22 22 H 1.08994 * 110.46021 * 57.39147 * 21 19 18 23 23 C 1.54507 * 110.50771 * 180.02562 * 21 19 18 24 24 C 1.54482 * 104.06210 * 118.64401 * 23 21 19 25 25 O 1.44420 * 104.80422 * 23.97814 * 24 23 21 26 26 C 1.44424 * 105.27461 * 319.48534 * 25 24 23 27 27 C 1.38308 * 120.13681 * 0.27485 * 13 12 11 28 28 C 1.38104 * 120.06702 * 359.48931 * 27 13 12 29 29 H 0.96998 * 120.00249 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03497 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.96253 * 180.02562 * 12 11 10 32 32 H 1.08996 * 109.47023 * 330.00006 * 14 13 12 33 33 H 1.08996 * 109.46839 * 209.99834 * 14 13 12 34 34 H 1.00905 * 110.99562 * 303.95628 * 15 14 13 35 35 H 1.09002 * 109.46843 * 299.99515 * 16 15 14 36 36 H 1.08999 * 109.47335 * 59.99960 * 16 15 14 37 37 H 1.09002 * 109.47218 * 300.00024 * 17 16 15 38 38 H 1.09005 * 109.47318 * 59.99221 * 17 16 15 39 39 H 0.96996 * 120.00251 * 359.97438 * 18 17 16 40 40 H 1.09003 * 110.50397 * 237.28282 * 23 21 19 41 41 H 1.08996 * 110.51306 * 359.85876 * 23 21 19 42 42 H 1.09000 * 110.36743 * 142.80978 * 24 23 21 43 43 H 1.08997 * 110.36988 * 265.02827 * 24 23 21 44 44 H 1.09000 * 110.37512 * 281.68721 * 26 25 24 45 45 H 1.08997 * 110.37522 * 159.34540 * 26 25 24 46 46 H 1.07998 * 119.96334 * 179.72446 * 27 13 12 47 47 H 1.08005 * 120.03005 * 180.25540 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5471 1.4401 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4057 -0.1081 11 6 3.2233 -3.5745 -0.0952 12 6 3.8531 -4.7986 -0.2048 13 6 5.2292 -4.8613 -0.3280 14 6 5.9133 -6.1988 -0.4469 15 7 6.0150 -6.5726 -1.8639 16 6 6.6777 -7.8744 -2.0186 17 6 6.7644 -8.2291 -3.5044 18 7 7.4258 -9.5271 -3.6588 19 6 7.6134 -10.0458 -4.8886 20 8 7.2343 -9.4382 -5.8673 21 6 8.2932 -11.3814 -5.0474 22 1 7.7571 -12.1503 -4.4913 23 6 8.3937 -11.7635 -6.5411 24 6 9.9131 -11.8667 -6.8008 25 8 10.4912 -12.1373 -5.5053 26 6 9.7638 -11.2990 -4.5813 27 6 5.9793 -3.6994 -0.3361 28 6 5.3550 -2.4720 -0.2317 29 1 -0.4850 0.8400 0.0004 30 1 2.1486 -3.5261 0.0006 31 1 3.2703 -5.7078 -0.1952 32 1 5.3338 -6.9520 0.0869 33 1 6.9121 -6.1356 -0.0152 34 1 5.1066 -6.5750 -2.3033 35 1 7.6818 -7.8232 -1.5977 36 1 6.1031 -8.6390 -1.4959 37 1 5.7600 -8.2804 -3.9249 38 1 7.3386 -7.4645 -4.0276 39 1 7.7287 -10.0133 -2.8761 40 1 7.9091 -12.7227 -6.7233 41 1 7.9494 -10.9876 -7.1645 42 1 10.1255 -12.6845 -7.4894 43 1 10.2945 -10.9269 -7.1997 44 1 10.1227 -10.2713 -4.6380 45 1 9.8616 -11.6804 -3.5650 46 1 7.0541 -3.7519 -0.4279 47 1 5.9410 -1.5648 -0.2422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124495704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:13 Heat of formation + Delta-G solvation = -84.253342 kcal Electronic energy + Delta-G solvation = -26747.844100 eV Core-core repulsion = 22703.162778 eV Total energy + Delta-G solvation = -4044.681322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -40.84359 -39.28496 -38.91524 -37.47266 -36.29759 -34.60094 -32.81833 -32.42677 -30.86695 -30.27721 -29.76231 -27.93312 -25.59417 -24.30215 -23.69924 -22.82465 -22.22019 -22.07634 -20.41819 -20.38718 -18.11562 -17.91897 -17.36156 -17.12386 -16.42358 -16.26966 -15.93848 -15.65782 -15.15933 -15.04736 -14.78723 -14.48386 -14.23494 -13.99549 -13.80817 -13.70799 -13.43943 -13.35288 -12.83380 -12.70656 -12.65981 -12.35478 -12.19173 -12.02807 -11.88647 -11.78510 -11.64057 -11.32981 -11.30065 -10.81268 -10.78369 -10.68247 -10.37636 -10.26752 -10.17830 -9.52556 -9.41948 -8.90335 -8.58851 -8.28889 -7.36833 -6.44530 -4.11309 2.09101 2.11917 2.14273 2.61354 3.20404 3.24491 3.38648 3.41897 3.84717 4.09571 4.20385 4.21512 4.30216 4.48496 4.56104 4.60475 4.69619 4.75884 4.79501 4.83864 5.05309 5.07923 5.11300 5.16447 5.21024 5.24697 5.29235 5.44764 5.51545 5.56312 5.59516 5.65707 5.69316 5.76772 5.96012 6.09213 6.18427 6.30219 6.53575 6.74029 6.81209 6.98302 7.02485 7.17309 7.23147 7.30362 7.58024 7.73861 7.76606 8.00654 8.90674 9.52727 10.62986 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.001477 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.351003 B =18949.834894 C =19159.847199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.390 4.390 8 H 0.106 0.894 9 O -0.217 6.217 10 C 0.162 3.838 11 C -0.222 4.222 12 C -0.066 4.066 13 C -0.180 4.180 14 C 0.119 3.881 15 N -0.682 5.682 16 C 0.048 3.952 17 C 0.118 3.882 18 N -0.727 5.727 19 C 0.521 3.479 20 O -0.531 6.531 21 C -0.146 4.146 22 H 0.111 0.889 23 C -0.148 4.148 24 C 0.044 3.956 25 O -0.371 6.371 26 C 0.057 3.943 27 C -0.053 4.053 28 C -0.194 4.194 29 H 0.280 0.720 30 H 0.132 0.868 31 H 0.106 0.894 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.346 0.654 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.401 0.599 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.114 0.886 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.673 -24.180 -6.556 30.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.466 4.466 8 H 0.124 0.876 9 O -0.121 6.121 10 C 0.110 3.890 11 C -0.241 4.241 12 C -0.085 4.085 13 C -0.182 4.182 14 C -0.009 4.009 15 N -0.314 5.314 16 C -0.082 4.082 17 C -0.006 4.006 18 N -0.379 5.379 19 C 0.306 3.694 20 O -0.407 6.407 21 C -0.168 4.168 22 H 0.129 0.871 23 C -0.185 4.185 24 C -0.033 4.033 25 O -0.290 6.290 26 C -0.020 4.020 27 C -0.072 4.072 28 C -0.213 4.213 29 H 0.090 0.910 30 H 0.150 0.850 31 H 0.124 0.876 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.164 0.836 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.235 0.765 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.118 0.882 46 H 0.132 0.868 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.013 -23.136 -7.290 30.214 hybrid contribution -0.801 -0.011 0.700 1.064 sum 17.211 -23.147 -6.590 29.588 Atomic orbital electron populations 1.69641 1.05579 1.28542 1.47862 1.24468 0.95030 0.98859 0.95604 0.86177 0.80315 0.81386 0.79008 1.19842 1.20763 1.18363 1.20767 0.76872 0.96637 1.52319 0.87635 1.83574 1.22645 1.25811 1.80103 1.19153 0.91747 0.85478 0.92633 1.21237 1.01089 0.91837 1.09945 1.20640 0.93466 0.96654 0.97740 1.19142 0.93364 0.93814 1.11847 1.20628 0.99503 0.93549 0.87172 1.60459 1.27527 1.27640 1.15772 1.22074 1.00358 0.91067 0.94694 1.21335 0.98377 0.84185 0.96685 1.45908 1.61397 1.22341 1.08271 1.20297 0.79035 0.87044 0.83031 1.90721 1.50141 1.61608 1.38195 1.22738 0.98205 0.95957 0.99911 0.87107 1.22982 0.97467 1.03835 0.94265 1.23486 0.91743 1.01802 0.86255 1.89148 1.58634 1.63748 1.17464 1.23355 0.87804 0.96008 0.94842 1.20470 0.98456 0.91094 0.97157 1.20230 0.91940 0.97956 1.11214 0.91015 0.84990 0.87636 0.95130 0.90917 0.83556 0.90454 0.94860 0.91309 0.90190 0.76542 0.90024 0.87899 0.88635 0.91828 0.91621 0.88154 0.86842 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.20 13.96 55.48 0.77 -24.42 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 3 Si 0.91 21.57 28.62 -169.99 -4.86 16.70 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.39 -10.92 9.95 30.89 0.31 -10.61 16 8 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 9 O -0.22 -5.67 8.59 0.05 0.00 -5.67 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.22 -4.66 9.17 -39.39 -0.36 -5.02 16 12 C -0.07 -1.13 9.69 -39.61 -0.38 -1.52 16 13 C -0.18 -2.79 5.40 -104.57 -0.56 -3.36 16 14 C 0.12 1.39 5.81 -4.98 -0.03 1.36 16 15 N -0.68 -7.27 6.49 -115.07 -0.75 -8.02 16 16 C 0.05 0.36 5.80 -3.83 -0.02 0.34 16 17 C 0.12 0.97 5.93 -4.04 -0.02 0.95 16 18 N -0.73 -4.68 5.54 -60.29 -0.33 -5.01 16 19 C 0.52 4.39 7.01 -10.98 -0.08 4.31 16 20 O -0.53 -6.77 15.28 5.56 0.08 -6.68 16 21 C -0.15 -0.85 3.51 -90.20 -0.32 -1.17 16 22 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 23 C -0.15 -0.94 6.67 -25.16 -0.17 -1.10 16 24 C 0.04 0.27 7.63 37.94 0.29 0.56 16 25 O -0.37 -2.91 11.65 -35.23 -0.41 -3.32 16 26 C 0.06 0.32 7.17 37.94 0.27 0.59 16 27 C -0.05 -0.87 9.69 -39.60 -0.38 -1.26 16 28 C -0.19 -3.78 9.99 -39.39 -0.39 -4.17 16 29 H 0.28 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.13 2.93 5.64 -52.49 -0.30 2.63 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.35 3.80 8.72 -39.29 -0.34 3.46 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 1.37 8.47 -40.82 -0.35 1.02 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.84 6.50 -51.93 -0.34 0.50 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.39 7.86 -51.93 -0.41 -0.02 16 45 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.12 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -32.42 391.58 -8.87 -41.29 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.06 Total: 4.20 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.21 Total: -14.97 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: -0.31 Total: -37.45 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.33 Total: -15.67 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.86 Total: 16.70 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.42 -8.87 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124495704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.961 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds