Wall clock time and date at job start Wed Apr 1 2020 00:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86797 * 120.00316 * 2 1 4 4 H 1.48502 * 109.47089 * 270.00753 * 3 2 1 5 5 H 1.48500 * 109.46978 * 29.99983 * 3 2 1 6 6 H 1.48494 * 109.47512 * 150.00211 * 3 2 1 7 7 C 1.38652 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99657 * 359.97438 * 7 2 1 9 9 O 1.34827 * 120.00549 * 179.97438 * 7 2 1 10 10 C 1.35751 * 117.00220 * 185.05491 * 9 7 2 11 11 C 1.38878 * 120.06982 * 354.46705 * 10 9 7 12 12 C 1.38101 * 119.92958 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07021 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.93195 * 179.97438 * 13 12 11 15 15 N 1.46900 * 109.47104 * 90.00151 * 14 13 12 16 16 C 1.46895 * 110.99774 * 180.02562 * 15 14 13 17 17 C 1.52999 * 109.47088 * 179.97438 * 16 15 14 18 18 N 1.46496 * 109.47318 * 179.97438 * 17 16 15 19 19 C 1.34783 * 119.99863 * 179.97438 * 18 17 16 20 20 O 1.21274 * 120.00455 * 359.97438 * 19 18 17 21 21 C 1.50706 * 119.99690 * 180.02562 * 19 18 17 22 22 H 1.08994 * 110.46021 * 57.39147 * 21 19 18 23 23 C 1.54507 * 110.50771 * 180.02562 * 21 19 18 24 24 C 1.54482 * 104.06210 * 118.64401 * 23 21 19 25 25 O 1.44420 * 104.80422 * 23.97814 * 24 23 21 26 26 C 1.44424 * 105.27461 * 319.48534 * 25 24 23 27 27 C 1.38308 * 120.13681 * 0.27485 * 13 12 11 28 28 C 1.38104 * 120.06702 * 359.48931 * 27 13 12 29 29 H 0.96998 * 120.00249 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.03497 * 359.97438 * 11 10 9 31 31 H 1.07997 * 119.96253 * 180.02562 * 12 11 10 32 32 H 1.08996 * 109.47023 * 330.00006 * 14 13 12 33 33 H 1.08996 * 109.46839 * 209.99834 * 14 13 12 34 34 H 1.00905 * 110.99562 * 303.95628 * 15 14 13 35 35 H 1.09002 * 109.46843 * 299.99515 * 16 15 14 36 36 H 1.08999 * 109.47335 * 59.99960 * 16 15 14 37 37 H 1.09002 * 109.47218 * 300.00024 * 17 16 15 38 38 H 1.09005 * 109.47318 * 59.99221 * 17 16 15 39 39 H 0.96996 * 120.00251 * 359.97438 * 18 17 16 40 40 H 1.09003 * 110.50397 * 237.28282 * 23 21 19 41 41 H 1.08996 * 110.51306 * 359.85876 * 23 21 19 42 42 H 1.09000 * 110.36743 * 142.80978 * 24 23 21 43 43 H 1.08997 * 110.36988 * 265.02827 * 24 23 21 44 44 H 1.09000 * 110.37512 * 281.68721 * 26 25 24 45 45 H 1.08997 * 110.37522 * 159.34540 * 26 25 24 46 46 H 1.07998 * 119.96334 * 179.72446 * 27 13 12 47 47 H 1.08005 * 120.03005 * 180.25540 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4471 2.6526 0.7000 6 1 3.5471 1.4401 0.6999 7 6 2.0088 -1.2008 -0.0005 8 1 1.4687 -2.1361 -0.0005 9 8 3.3571 -1.2009 -0.0011 10 6 3.9733 -2.4057 -0.1081 11 6 3.2233 -3.5745 -0.0952 12 6 3.8531 -4.7986 -0.2048 13 6 5.2292 -4.8613 -0.3280 14 6 5.9133 -6.1988 -0.4469 15 7 6.0150 -6.5726 -1.8639 16 6 6.6777 -7.8744 -2.0186 17 6 6.7644 -8.2291 -3.5044 18 7 7.4258 -9.5271 -3.6588 19 6 7.6134 -10.0458 -4.8886 20 8 7.2343 -9.4382 -5.8673 21 6 8.2932 -11.3814 -5.0474 22 1 7.7571 -12.1503 -4.4913 23 6 8.3937 -11.7635 -6.5411 24 6 9.9131 -11.8667 -6.8008 25 8 10.4912 -12.1373 -5.5053 26 6 9.7638 -11.2990 -4.5813 27 6 5.9793 -3.6994 -0.3361 28 6 5.3550 -2.4720 -0.2317 29 1 -0.4850 0.8400 0.0004 30 1 2.1486 -3.5261 0.0006 31 1 3.2703 -5.7078 -0.1952 32 1 5.3338 -6.9520 0.0869 33 1 6.9121 -6.1356 -0.0152 34 1 5.1066 -6.5750 -2.3033 35 1 7.6818 -7.8232 -1.5977 36 1 6.1031 -8.6390 -1.4959 37 1 5.7600 -8.2804 -3.9249 38 1 7.3386 -7.4645 -4.0276 39 1 7.7287 -10.0133 -2.8761 40 1 7.9091 -12.7227 -6.7233 41 1 7.9494 -10.9876 -7.1645 42 1 10.1255 -12.6845 -7.4894 43 1 10.2945 -10.9269 -7.1997 44 1 10.1227 -10.2713 -4.6380 45 1 9.8616 -11.6804 -3.5650 46 1 7.0541 -3.7519 -0.4279 47 1 5.9410 -1.5648 -0.2422 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124495704.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:52 Heat of formation + Delta-G solvation = -108.825793 kcal Electronic energy + Delta-G solvation = -26748.909642 eV Core-core repulsion = 22703.162778 eV Total energy + Delta-G solvation = -4045.746864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 7.66 seconds Orbital eigenvalues (eV) -41.43829 -40.89806 -39.51080 -38.82479 -37.32888 -35.46330 -34.44705 -33.36353 -31.96582 -31.74828 -30.41111 -28.90961 -27.34205 -25.34411 -24.38194 -23.68738 -23.40320 -22.83862 -21.85337 -20.97922 -19.82365 -19.11777 -18.66555 -17.65988 -17.16226 -16.99654 -16.68108 -16.51831 -16.35357 -16.10731 -15.84174 -15.71298 -15.48864 -15.33695 -15.15844 -14.77820 -14.41668 -14.37638 -14.14697 -13.96734 -13.86574 -13.53446 -13.19009 -13.05437 -12.65404 -12.54146 -12.49197 -12.37703 -12.33016 -12.26574 -12.09715 -11.89483 -11.79373 -11.27047 -10.98156 -10.90328 -10.86835 -10.18900 -9.79005 -9.39461 -8.97827 -8.50681 -6.23162 0.58753 0.62626 1.30808 1.34839 1.50195 1.51224 2.00231 2.27443 2.74472 2.95999 3.03817 3.16763 3.36716 3.54269 3.76568 3.83287 3.91595 4.03074 4.06223 4.11524 4.15444 4.22634 4.24336 4.29704 4.48018 4.53179 4.60303 4.70568 4.74189 4.75538 4.81415 4.82655 4.93745 4.96803 4.99725 5.01943 5.02385 5.27747 5.35440 5.37823 5.58699 5.72107 5.76663 5.81402 5.91521 6.05035 6.27024 6.38818 6.46844 6.83897 7.16477 7.58944 8.60900 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.028525 B = 0.001477 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.351003 B =18949.834894 C =19159.847199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.399 4.399 8 H 0.081 0.919 9 O -0.247 6.247 10 C 0.119 3.881 11 C -0.239 4.239 12 C -0.066 4.066 13 C -0.152 4.152 14 C 0.124 3.876 15 N -0.696 5.696 16 C 0.058 3.942 17 C 0.124 3.876 18 N -0.711 5.711 19 C 0.518 3.482 20 O -0.581 6.581 21 C -0.139 4.139 22 H 0.138 0.862 23 C -0.150 4.150 24 C 0.042 3.958 25 O -0.389 6.389 26 C 0.057 3.943 27 C -0.049 4.049 28 C -0.196 4.196 29 H 0.284 0.716 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.343 0.657 35 H 0.093 0.907 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.419 0.581 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.110 0.890 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.130 0.870 46 H 0.152 0.848 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.803 -26.812 -5.793 34.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.098 0.902 9 O -0.155 6.155 10 C 0.070 3.930 11 C -0.259 4.259 12 C -0.085 4.085 13 C -0.153 4.153 14 C -0.004 4.004 15 N -0.328 5.328 16 C -0.071 4.071 17 C -0.001 4.001 18 N -0.364 5.364 19 C 0.305 3.695 20 O -0.461 6.461 21 C -0.160 4.160 22 H 0.156 0.844 23 C -0.188 4.188 24 C -0.035 4.035 25 O -0.308 6.308 26 C -0.020 4.020 27 C -0.067 4.067 28 C -0.215 4.215 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.152 0.848 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.161 0.839 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.257 0.743 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.128 0.872 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.148 0.852 46 H 0.169 0.831 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 21.189 -25.829 -6.491 34.033 hybrid contribution -1.559 0.451 0.415 1.675 sum 19.629 -25.378 -6.077 32.654 Atomic orbital electron populations 1.69724 1.06877 1.29575 1.50206 1.25272 0.95882 1.02133 0.95550 0.85219 0.78807 0.77468 0.79226 1.19208 1.19124 1.18728 1.20703 0.78144 0.96091 1.52632 0.90182 1.83515 1.21210 1.27614 1.83129 1.19719 0.93279 0.85093 0.94948 1.21262 1.00083 0.93341 1.11178 1.20950 0.94741 0.96025 0.96737 1.19703 0.92629 0.95931 1.07022 1.20640 1.00400 0.91224 0.88161 1.60381 1.27596 1.29875 1.14931 1.22033 1.01133 0.90007 0.93924 1.21144 0.97309 0.84459 0.97186 1.45745 1.60402 1.21657 1.08551 1.20793 0.78364 0.87617 0.82753 1.90708 1.52369 1.63102 1.39913 1.22763 0.98509 0.94868 0.99868 0.84395 1.22977 0.97495 1.03802 0.94504 1.23551 0.91567 1.02111 0.86238 1.89130 1.59315 1.64223 1.18161 1.23502 0.87016 0.95656 0.95840 1.20944 1.00404 0.89986 0.95373 1.20551 0.90541 0.99939 1.10427 0.90591 0.87639 0.84774 0.93321 0.88812 0.83948 0.88820 0.92919 0.92808 0.92344 0.74346 0.88548 0.90167 0.87168 0.92570 0.92409 0.85241 0.83062 0.85620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.42 13.96 21.61 0.30 -55.12 16 2 C 0.01 0.58 5.49 84.83 0.47 1.05 16 3 Si 0.97 45.82 28.62 68.60 1.96 47.78 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 6 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.40 -23.72 9.95 67.92 0.68 -23.05 16 8 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 9 O -0.25 -13.55 8.59 -22.73 -0.20 -13.74 16 10 C 0.12 5.54 6.65 22.58 0.15 5.69 16 11 C -0.24 -10.37 9.17 22.39 0.21 -10.16 16 12 C -0.07 -2.14 9.69 22.25 0.22 -1.93 16 13 C -0.15 -4.15 5.40 -19.83 -0.11 -4.26 16 14 C 0.12 2.23 5.81 85.56 0.50 2.72 16 15 N -0.70 -12.00 6.49 -517.96 -3.36 -15.36 16 16 C 0.06 0.63 5.80 86.30 0.50 1.13 16 17 C 0.12 1.77 5.93 86.38 0.51 2.28 16 18 N -0.71 -7.25 5.54 -463.05 -2.57 -9.82 16 19 C 0.52 7.98 7.01 87.66 0.61 8.59 16 20 O -0.58 -14.91 15.28 -3.01 -0.05 -14.96 16 21 C -0.14 -1.29 3.51 -10.52 -0.04 -1.33 16 22 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 23 C -0.15 -1.74 6.67 31.61 0.21 -1.53 16 24 C 0.04 0.48 7.63 72.49 0.55 1.03 16 25 O -0.39 -5.34 11.65 -148.98 -1.74 -7.07 16 26 C 0.06 0.48 7.17 72.49 0.52 1.00 16 27 C -0.05 -1.43 9.69 22.25 0.22 -1.22 16 28 C -0.20 -7.40 9.99 22.39 0.22 -7.18 16 29 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 30 H 0.11 5.07 5.64 -2.91 -0.02 5.06 16 31 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.09 1.40 8.08 -2.39 -0.02 1.38 16 34 H 0.34 6.44 8.72 -89.69 -0.78 5.66 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.42 1.17 8.47 -92.71 -0.79 0.38 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 1.34 6.50 -2.39 -0.02 1.32 16 42 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.06 0.57 7.86 -2.39 -0.02 0.56 16 45 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 46 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 47 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -76.18 391.58 -0.79 -76.97 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.57 Total: 18.44 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 5.42 Total: -27.14 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -5.63 Total: -80.29 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.98 Total: -35.77 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.96 Total: 47.78 kcal Total: -76.18 -0.79 -76.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124495704.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.853 kcal (2) G-P(sol) polarization free energy of solvation -76.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.66 seconds