Wall clock time and date at job start Wed Apr 1 2020 00:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00517 * 2 1 4 4 H 1.48498 * 109.47387 * 269.99986 * 3 2 1 5 5 H 1.48503 * 109.47002 * 30.00172 * 3 2 1 6 6 H 1.48503 * 109.47183 * 149.99762 * 3 2 1 7 7 C 1.38656 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99879 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00364 * 359.97438 * 7 2 1 10 10 C 1.35747 * 117.00382 * 185.05978 * 9 7 2 11 11 C 1.38877 * 120.07121 * 354.46810 * 10 9 7 12 12 C 1.38095 * 119.93370 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.06973 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.93082 * 180.02562 * 13 12 11 15 15 N 1.46898 * 109.47415 * 89.99709 * 14 13 12 16 16 C 1.46907 * 110.99862 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.46799 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.47033 * 180.02562 * 17 16 15 19 19 C 1.34779 * 120.00270 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99916 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.00316 * 180.02562 * 19 18 17 22 22 H 1.09008 * 110.56219 * 302.67993 * 21 19 18 23 23 C 1.54498 * 110.51497 * 179.97438 * 21 19 18 24 24 C 1.54486 * 104.18647 * 241.28673 * 23 21 19 25 25 O 1.44642 * 104.69345 * 336.18510 * 24 23 21 26 26 C 1.44428 * 105.36915 * 40.34755 * 25 24 23 27 27 C 1.38304 * 120.13716 * 0.27458 * 13 12 11 28 28 C 1.38098 * 120.06669 * 359.49485 * 27 13 12 29 29 H 0.97012 * 119.99456 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.03260 * 359.97438 * 11 10 9 31 31 H 1.08006 * 119.96480 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.47286 * 329.99165 * 14 13 12 33 33 H 1.09000 * 109.47006 * 210.00106 * 14 13 12 34 34 H 1.00902 * 111.00171 * 56.04960 * 15 14 13 35 35 H 1.08997 * 109.46693 * 60.00220 * 16 15 14 36 36 H 1.09000 * 109.47442 * 300.00136 * 16 15 14 37 37 H 1.09002 * 109.47304 * 60.00222 * 17 16 15 38 38 H 1.09000 * 109.47350 * 300.00333 * 17 16 15 39 39 H 0.97004 * 119.99903 * 0.02562 * 18 17 16 40 40 H 1.09004 * 110.51187 * 0.02562 * 23 21 19 41 41 H 1.09003 * 110.51548 * 122.57200 * 23 21 19 42 42 H 1.08999 * 110.36932 * 94.92056 * 24 23 21 43 43 H 1.08996 * 110.36834 * 217.25453 * 24 23 21 44 44 H 1.08996 * 110.37334 * 200.72864 * 26 25 24 45 45 H 1.08998 * 110.36948 * 78.39339 * 26 25 24 46 46 H 1.07997 * 119.96319 * 179.72528 * 27 13 12 47 47 H 1.08005 * 120.03275 * 180.25227 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4399 0.7001 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0697 -3.5047 0.1056 11 6 3.4569 -3.4397 0.0923 12 6 4.2020 -4.5973 0.2009 13 6 3.5683 -5.8204 0.3235 14 6 4.3845 -7.0816 0.4425 15 7 4.6567 -7.3569 1.8595 16 6 5.4518 -8.5825 2.0144 17 6 5.7150 -8.8352 3.5002 18 7 6.5084 -10.0570 3.6547 19 6 6.8625 -10.4797 4.8845 20 8 6.5247 -9.8483 5.8633 21 6 7.6791 -11.7363 5.0434 22 1 7.1699 -12.5843 4.5853 23 6 7.9592 -12.0147 6.5370 24 6 9.4993 -11.9671 6.6487 25 8 9.9732 -12.2618 5.3143 26 6 9.0831 -11.5510 4.4263 27 6 2.1870 -5.8890 0.3320 28 6 1.4363 -4.7345 0.2284 29 1 -0.4850 0.8402 -0.0004 30 1 3.9525 -2.4848 -0.0030 31 1 5.2809 -4.5474 0.1910 32 1 5.3267 -6.9563 -0.0909 33 1 3.8305 -7.9150 0.0103 34 1 3.7992 -7.4134 2.3882 35 1 6.4015 -8.4679 1.4919 36 1 4.9049 -9.4261 1.5933 37 1 4.7655 -8.9496 4.0231 38 1 6.2621 -7.9915 3.9209 39 1 6.7789 -10.5619 2.8718 40 1 7.5067 -11.2437 7.1607 41 1 7.5862 -12.9995 6.8186 42 1 9.8268 -10.9741 6.9565 43 1 9.8520 -12.7195 7.3541 44 1 9.1186 -11.9843 3.4268 45 1 9.3460 -10.4938 4.3920 46 1 1.6950 -6.8460 0.4234 47 1 0.3576 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124495751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:30 Heat of formation + Delta-G solvation = -85.993145 kcal Electronic energy + Delta-G solvation = -26726.610919 eV Core-core repulsion = 22681.854154 eV Total energy + Delta-G solvation = -4044.756766 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.82231 -39.13040 -38.87675 -37.34951 -36.20150 -34.55717 -32.79940 -32.32122 -30.74504 -30.18703 -29.70234 -27.79969 -25.56604 -24.35233 -23.70218 -22.78671 -22.20486 -21.97388 -20.44383 -20.37465 -18.08880 -18.00317 -17.15439 -16.95552 -16.42027 -16.27192 -15.94625 -15.62248 -15.15722 -14.84022 -14.60099 -14.50721 -14.38758 -14.00814 -13.69957 -13.57419 -13.38478 -13.22024 -13.08376 -12.70506 -12.65775 -12.22991 -11.99041 -11.86816 -11.83545 -11.72838 -11.51707 -11.31332 -11.26441 -10.82171 -10.72682 -10.58485 -10.44306 -10.36521 -10.24961 -9.50946 -9.34768 -8.85531 -8.53516 -8.19436 -7.21600 -6.46630 -4.05391 2.15447 2.19047 2.23639 2.63483 3.12039 3.13522 3.18262 3.42293 3.85893 3.95736 4.13742 4.22784 4.31784 4.50018 4.61292 4.64671 4.70865 4.77179 4.82764 5.06593 5.07986 5.14064 5.17579 5.23398 5.25326 5.30143 5.35866 5.45670 5.52384 5.59671 5.65510 5.71273 5.77562 5.84771 5.97781 6.18886 6.19103 6.40287 6.67080 6.84239 6.89888 7.00874 7.06473 7.15961 7.30890 7.38901 7.43264 7.75200 7.80518 7.98483 8.99107 9.68639 10.71262 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.001496 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.597458 B =18715.170038 C =19181.106311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.177 6.177 10 C 0.157 3.843 11 C -0.236 4.236 12 C -0.047 4.047 13 C -0.189 4.189 14 C 0.121 3.879 15 N -0.682 5.682 16 C 0.048 3.952 17 C 0.118 3.882 18 N -0.727 5.727 19 C 0.521 3.479 20 O -0.531 6.531 21 C -0.146 4.146 22 H 0.111 0.889 23 C -0.148 4.148 24 C 0.044 3.956 25 O -0.372 6.372 26 C 0.058 3.942 27 C -0.068 4.068 28 C -0.194 4.194 29 H 0.270 0.730 30 H 0.127 0.873 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.345 0.655 35 H 0.077 0.923 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.401 0.599 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.741 -24.389 6.586 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.081 6.081 10 C 0.102 3.898 11 C -0.255 4.255 12 C -0.066 4.066 13 C -0.191 4.191 14 C -0.007 4.007 15 N -0.314 5.314 16 C -0.082 4.082 17 C -0.006 4.006 18 N -0.379 5.379 19 C 0.306 3.694 20 O -0.407 6.407 21 C -0.168 4.168 22 H 0.129 0.871 23 C -0.186 4.186 24 C -0.033 4.033 25 O -0.291 6.291 26 C -0.020 4.020 27 C -0.087 4.087 28 C -0.213 4.213 29 H 0.080 0.920 30 H 0.144 0.856 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.164 0.836 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.235 0.765 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.082 0.918 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.125 0.875 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.779 -23.404 7.240 29.140 hybrid contribution -0.344 0.066 -0.591 0.687 sum 15.435 -23.338 6.649 28.759 Atomic orbital electron populations 1.70043 1.05975 1.27692 1.45969 1.25295 0.95848 0.98858 0.96498 0.85707 0.78962 0.80037 0.78710 1.19876 1.20237 1.19152 1.21340 0.91834 0.80792 1.52867 0.89008 1.83972 1.34435 1.11510 1.78142 1.19404 0.90336 0.88030 0.91986 1.21172 0.93781 0.98979 1.11566 1.20568 0.98318 0.91545 0.96195 1.19067 0.93080 0.93922 1.12995 1.20606 0.98305 0.94344 0.87406 1.60465 1.24948 1.34492 1.11478 1.22074 0.99259 0.91969 0.94893 1.21339 0.96081 0.86575 0.96578 1.45914 1.55775 1.27960 1.08252 1.20290 0.79892 0.86180 0.83047 1.90721 1.54734 1.57028 1.38206 1.22733 0.97550 0.97111 0.99396 0.87117 1.22975 0.96824 1.04231 0.94522 1.23532 0.92890 1.01565 0.85275 1.89173 1.52830 1.70790 1.16296 1.23355 0.86059 0.97750 0.94836 1.20472 0.92953 0.96595 0.98647 1.20168 0.99500 0.90337 1.11319 0.92007 0.85564 0.87474 0.91053 0.95266 0.83626 0.90491 0.94910 0.91330 0.90182 0.76547 0.87918 0.90036 0.91805 0.88599 0.88154 0.91625 0.87499 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.94 9.49 30.89 0.29 -10.64 16 8 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 9 O -0.18 -5.06 9.76 0.07 0.00 -5.06 16 10 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 11 C -0.24 -5.08 9.17 -39.40 -0.36 -5.44 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 13 C -0.19 -3.07 5.40 -104.58 -0.56 -3.63 16 14 C 0.12 1.48 5.81 -4.98 -0.03 1.45 16 15 N -0.68 -7.59 6.49 -115.06 -0.75 -8.34 16 16 C 0.05 0.38 5.80 -3.82 -0.02 0.36 16 17 C 0.12 1.01 5.93 -4.04 -0.02 0.98 16 18 N -0.73 -4.82 5.54 -60.30 -0.33 -5.16 16 19 C 0.52 4.47 7.01 -10.99 -0.08 4.40 16 20 O -0.53 -6.85 15.28 5.56 0.08 -6.76 16 21 C -0.15 -0.87 3.51 -90.21 -0.32 -1.18 16 22 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 23 C -0.15 -0.95 6.66 -25.17 -0.17 -1.12 16 24 C 0.04 0.28 7.65 37.94 0.29 0.57 16 25 O -0.37 -2.97 11.65 -35.23 -0.41 -3.38 16 26 C 0.06 0.33 7.17 37.94 0.27 0.60 16 27 C -0.07 -1.16 9.69 -39.61 -0.38 -1.54 16 28 C -0.19 -4.02 9.99 -39.40 -0.39 -4.42 16 29 H 0.27 7.24 8.31 -40.81 -0.34 6.90 16 30 H 0.13 2.74 5.64 -52.48 -0.30 2.44 16 31 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.03 0.32 8.08 -51.93 -0.42 -0.10 16 34 H 0.35 3.88 8.72 -39.29 -0.34 3.54 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.40 1.45 8.47 -40.82 -0.35 1.10 16 40 H 0.10 0.85 6.50 -51.93 -0.34 0.51 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.40 7.86 -51.93 -0.41 0.00 16 46 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 47 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 LS Contribution 392.73 15.07 5.92 5.92 Total: -1.00 -33.52 392.73 -9.03 -42.55 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.05 Total: 5.60 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -2.22 Total: -16.38 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.32 Total: -37.94 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.32 Total: -15.20 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.52 -9.03 -42.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124495751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.447 kcal (2) G-P(sol) polarization free energy of solvation -33.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds