Wall clock time and date at job start Wed Apr 1 2020 00:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86795 * 120.00517 * 2 1 4 4 H 1.48498 * 109.47387 * 269.99986 * 3 2 1 5 5 H 1.48503 * 109.47002 * 30.00172 * 3 2 1 6 6 H 1.48503 * 109.47183 * 149.99762 * 3 2 1 7 7 C 1.38656 * 119.99496 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99879 * 180.02562 * 7 2 1 9 9 O 1.34827 * 120.00364 * 359.97438 * 7 2 1 10 10 C 1.35747 * 117.00382 * 185.05978 * 9 7 2 11 11 C 1.38877 * 120.07121 * 354.46810 * 10 9 7 12 12 C 1.38095 * 119.93370 * 179.97438 * 11 10 9 13 13 C 1.38297 * 120.06973 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.93082 * 180.02562 * 13 12 11 15 15 N 1.46898 * 109.47415 * 89.99709 * 14 13 12 16 16 C 1.46907 * 110.99862 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.46799 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.47033 * 180.02562 * 17 16 15 19 19 C 1.34779 * 120.00270 * 180.02562 * 18 17 16 20 20 O 1.21280 * 119.99916 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.00316 * 180.02562 * 19 18 17 22 22 H 1.09008 * 110.56219 * 302.67993 * 21 19 18 23 23 C 1.54498 * 110.51497 * 179.97438 * 21 19 18 24 24 C 1.54486 * 104.18647 * 241.28673 * 23 21 19 25 25 O 1.44642 * 104.69345 * 336.18510 * 24 23 21 26 26 C 1.44428 * 105.36915 * 40.34755 * 25 24 23 27 27 C 1.38304 * 120.13716 * 0.27458 * 13 12 11 28 28 C 1.38098 * 120.06669 * 359.49485 * 27 13 12 29 29 H 0.97012 * 119.99456 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.03260 * 359.97438 * 11 10 9 31 31 H 1.08006 * 119.96480 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.47286 * 329.99165 * 14 13 12 33 33 H 1.09000 * 109.47006 * 210.00106 * 14 13 12 34 34 H 1.00902 * 111.00171 * 56.04960 * 15 14 13 35 35 H 1.08997 * 109.46693 * 60.00220 * 16 15 14 36 36 H 1.09000 * 109.47442 * 300.00136 * 16 15 14 37 37 H 1.09002 * 109.47304 * 60.00222 * 17 16 15 38 38 H 1.09000 * 109.47350 * 300.00333 * 17 16 15 39 39 H 0.97004 * 119.99903 * 0.02562 * 18 17 16 40 40 H 1.09004 * 110.51187 * 0.02562 * 23 21 19 41 41 H 1.09003 * 110.51548 * 122.57200 * 23 21 19 42 42 H 1.08999 * 110.36932 * 94.92056 * 24 23 21 43 43 H 1.08996 * 110.36834 * 217.25453 * 24 23 21 44 44 H 1.08996 * 110.37334 * 200.72864 * 26 25 24 45 45 H 1.08998 * 110.36948 * 78.39339 * 26 25 24 46 46 H 1.07997 * 119.96319 * 179.72528 * 27 13 12 47 47 H 1.08005 * 120.03275 * 180.25227 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4472 2.6526 0.7001 6 1 3.5472 1.4399 0.7001 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0697 -3.5047 0.1056 11 6 3.4569 -3.4397 0.0923 12 6 4.2020 -4.5973 0.2009 13 6 3.5683 -5.8204 0.3235 14 6 4.3845 -7.0816 0.4425 15 7 4.6567 -7.3569 1.8595 16 6 5.4518 -8.5825 2.0144 17 6 5.7150 -8.8352 3.5002 18 7 6.5084 -10.0570 3.6547 19 6 6.8625 -10.4797 4.8845 20 8 6.5247 -9.8483 5.8633 21 6 7.6791 -11.7363 5.0434 22 1 7.1699 -12.5843 4.5853 23 6 7.9592 -12.0147 6.5370 24 6 9.4993 -11.9671 6.6487 25 8 9.9732 -12.2618 5.3143 26 6 9.0831 -11.5510 4.4263 27 6 2.1870 -5.8890 0.3320 28 6 1.4363 -4.7345 0.2284 29 1 -0.4850 0.8402 -0.0004 30 1 3.9525 -2.4848 -0.0030 31 1 5.2809 -4.5474 0.1910 32 1 5.3267 -6.9563 -0.0909 33 1 3.8305 -7.9150 0.0103 34 1 3.7992 -7.4134 2.3882 35 1 6.4015 -8.4679 1.4919 36 1 4.9049 -9.4261 1.5933 37 1 4.7655 -8.9496 4.0231 38 1 6.2621 -7.9915 3.9209 39 1 6.7789 -10.5619 2.8718 40 1 7.5067 -11.2437 7.1607 41 1 7.5862 -12.9995 6.8186 42 1 9.8268 -10.9741 6.9565 43 1 9.8520 -12.7195 7.3541 44 1 9.1186 -11.9843 3.4268 45 1 9.3460 -10.4938 4.3920 46 1 1.6950 -6.8460 0.4234 47 1 0.3576 -4.7883 0.2392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124495751.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:29 Heat of formation + Delta-G solvation = -111.846485 kcal Electronic energy + Delta-G solvation = -26727.732004 eV Core-core repulsion = 22681.854154 eV Total energy + Delta-G solvation = -4045.877851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = -5.10 seconds Orbital eigenvalues (eV) -41.42930 -40.78252 -39.49054 -38.72764 -37.29887 -35.45403 -34.28018 -33.34851 -31.87410 -31.70730 -30.38237 -28.80814 -27.41510 -25.39624 -24.37980 -23.62143 -23.41291 -22.83708 -21.93555 -20.97529 -19.83191 -18.83976 -18.65856 -17.66066 -17.17911 -16.98771 -16.63373 -16.45073 -16.19830 -16.16946 -15.98211 -15.62063 -15.52898 -15.24292 -15.06833 -14.70945 -14.50405 -14.27533 -14.24273 -13.88637 -13.58559 -13.36874 -13.18171 -12.97694 -12.64802 -12.52326 -12.47254 -12.36704 -12.26155 -12.22027 -12.13871 -11.98081 -11.79023 -11.16442 -10.97793 -10.86979 -10.79350 -10.18730 -9.76070 -9.36584 -8.89885 -8.47408 -6.15474 0.62053 0.68461 1.34699 1.43757 1.50262 1.52188 2.00532 2.17664 2.80218 2.96162 3.13517 3.37007 3.53166 3.56310 3.76748 3.83269 3.92631 4.04959 4.08669 4.11952 4.18552 4.23152 4.24346 4.29736 4.50135 4.55289 4.61981 4.70546 4.73341 4.74288 4.81328 4.85519 4.94312 4.96963 4.99951 5.02537 5.11079 5.16795 5.32028 5.35810 5.57991 5.71451 5.73372 5.82619 6.03191 6.06427 6.26375 6.42460 6.47072 6.97543 7.16626 7.78655 8.75788 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.001496 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.597458 B =18715.170038 C =19181.106311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.018 2.982 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.414 4.414 8 H 0.101 0.899 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.246 4.246 12 C -0.050 4.050 13 C -0.160 4.160 14 C 0.126 3.874 15 N -0.698 5.698 16 C 0.059 3.941 17 C 0.124 3.876 18 N -0.711 5.711 19 C 0.518 3.482 20 O -0.581 6.581 21 C -0.138 4.138 22 H 0.139 0.861 23 C -0.150 4.150 24 C 0.042 3.958 25 O -0.390 6.390 26 C 0.057 3.943 27 C -0.059 4.059 28 C -0.207 4.207 29 H 0.272 0.728 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.344 0.656 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.419 0.581 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.111 0.889 44 H 0.130 0.870 45 H 0.056 0.944 46 H 0.149 0.851 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.356 -27.664 5.869 33.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.141 6.141 10 C 0.062 3.938 11 C -0.266 4.266 12 C -0.068 4.068 13 C -0.161 4.161 14 C -0.002 4.002 15 N -0.330 5.330 16 C -0.071 4.071 17 C -0.001 4.001 18 N -0.363 5.363 19 C 0.305 3.695 20 O -0.461 6.461 21 C -0.160 4.160 22 H 0.157 0.843 23 C -0.188 4.188 24 C -0.035 4.035 25 O -0.309 6.309 26 C -0.020 4.020 27 C -0.077 4.077 28 C -0.226 4.226 29 H 0.081 0.919 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.162 0.838 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.257 0.743 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.074 0.926 43 H 0.129 0.871 44 H 0.148 0.852 45 H 0.075 0.925 46 H 0.167 0.833 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.442 -26.760 6.487 33.141 hybrid contribution -1.015 0.689 -0.322 1.268 sum 17.427 -26.071 6.165 31.960 Atomic orbital electron populations 1.70188 1.07996 1.28745 1.48940 1.26579 0.96858 1.02708 0.95882 0.84593 0.77768 0.74602 0.79291 1.18675 1.19591 1.17806 1.21812 0.92484 0.81493 1.53204 0.88205 1.83933 1.36031 1.12651 1.81495 1.19981 0.91652 0.88000 0.94160 1.21269 0.93113 1.00119 1.12068 1.20929 0.99687 0.90966 0.95265 1.19658 0.93235 0.95242 1.07989 1.20600 0.98586 0.92528 0.88469 1.60355 1.25258 1.36791 1.10622 1.22026 0.99574 0.91315 0.94154 1.21142 0.95327 0.86528 0.97082 1.45749 1.54768 1.27282 1.08546 1.20790 0.79447 0.86529 0.82757 1.90709 1.56792 1.58678 1.39927 1.22757 0.97506 0.96448 0.99250 0.84305 1.22971 0.96737 1.04282 0.94767 1.23601 0.92875 1.01727 0.85263 1.89156 1.53655 1.71121 1.16997 1.23500 0.85266 0.97470 0.95793 1.20918 0.93419 0.96827 0.96547 1.20459 0.99915 0.90663 1.11559 0.91872 0.86699 0.84583 0.89508 0.92799 0.83760 0.89153 0.92646 0.92591 0.92569 0.74347 0.90190 0.88475 0.92615 0.87078 0.85240 0.92530 0.83347 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.99 13.67 21.61 0.30 -56.69 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 3 Si 1.02 43.35 29.55 68.60 2.03 45.38 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.41 -24.43 9.49 67.92 0.64 -23.78 16 8 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 9 O -0.23 -14.29 9.76 -22.67 -0.22 -14.52 16 10 C 0.11 5.63 6.65 22.58 0.15 5.78 16 11 C -0.25 -10.79 9.17 22.39 0.21 -10.58 16 12 C -0.05 -1.69 9.69 22.25 0.22 -1.48 16 13 C -0.16 -4.61 5.40 -19.84 -0.11 -4.72 16 14 C 0.13 2.40 5.81 85.56 0.50 2.89 16 15 N -0.70 -12.59 6.49 -517.94 -3.36 -15.95 16 16 C 0.06 0.67 5.80 86.30 0.50 1.17 16 17 C 0.12 1.82 5.93 86.38 0.51 2.34 16 18 N -0.71 -7.46 5.54 -463.06 -2.57 -10.02 16 19 C 0.52 8.09 7.01 87.66 0.61 8.71 16 20 O -0.58 -15.03 15.28 -3.03 -0.05 -15.08 16 21 C -0.14 -1.31 3.51 -10.53 -0.04 -1.34 16 22 H 0.14 0.56 8.14 -2.38 -0.02 0.54 16 23 C -0.15 -1.75 6.66 31.61 0.21 -1.54 16 24 C 0.04 0.49 7.65 72.49 0.55 1.04 16 25 O -0.39 -5.47 11.65 -148.98 -1.74 -7.20 16 26 C 0.06 0.50 7.17 72.49 0.52 1.02 16 27 C -0.06 -1.84 9.69 22.25 0.22 -1.62 16 28 C -0.21 -8.67 9.99 22.39 0.22 -8.44 16 29 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 30 H 0.12 5.18 5.64 -2.91 -0.02 5.16 16 31 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.34 6.46 8.72 -89.69 -0.78 5.68 16 35 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.42 1.29 8.47 -92.71 -0.79 0.50 16 40 H 0.08 1.34 6.50 -2.38 -0.02 1.33 16 41 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.06 0.60 7.86 -2.39 -0.02 0.58 16 46 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 47 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -80.37 392.73 -0.79 -81.16 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.57 Total: 24.35 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 5.39 Total: -31.42 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -5.63 Total: -82.67 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -2.00 Total: -36.80 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -80.37 -0.79 -81.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124495751.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.689 kcal (2) G-P(sol) polarization free energy of solvation -80.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -5.10 seconds