Wall clock time and date at job start Tue Mar 31 2020 21:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48494 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47357 * 300.00526 * 3 2 1 6 6 H 1.48503 * 109.46997 * 60.00160 * 3 2 1 7 7 C 1.38808 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99563 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99880 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47323 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99679 * 179.97438 * 12 11 10 14 14 O 1.21273 * 119.99817 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99609 * 180.27482 * 13 12 11 16 16 H 1.09001 * 109.47295 * 59.72377 * 15 13 12 17 17 C 1.52999 * 109.47107 * 179.72450 * 15 13 12 18 18 C 1.52997 * 109.47391 * 179.97438 * 17 15 13 19 19 C 1.52995 * 109.47256 * 300.00325 * 18 17 15 20 20 C 1.53000 * 109.47144 * 359.97438 * 19 18 17 21 21 C 1.52999 * 109.47040 * 300.00029 * 20 19 18 22 22 C 1.52995 * 109.47176 * 59.99991 * 21 20 19 23 23 C 1.52995 * 109.47228 * 299.72584 * 15 13 12 24 24 H 1.09006 * 109.47709 * 0.02562 * 23 15 13 25 25 C 1.52999 * 109.47176 * 120.00007 * 23 15 13 26 26 F 1.39900 * 109.47073 * 53.44500 * 25 23 15 27 27 F 1.39905 * 109.47145 * 173.44066 * 25 23 15 28 28 F 1.39896 * 109.47241 * 293.44280 * 25 23 15 29 29 H 0.96995 * 119.99695 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00268 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46782 * 60.00150 * 10 9 7 32 32 H 1.09001 * 109.47142 * 300.00641 * 10 9 7 33 33 H 1.08999 * 109.46782 * 59.99928 * 11 10 9 34 34 H 1.09002 * 109.46958 * 300.00635 * 11 10 9 35 35 H 0.96992 * 120.00046 * 359.97438 * 12 11 10 36 36 H 1.09000 * 109.47118 * 300.00086 * 17 15 13 37 37 H 1.09010 * 109.46816 * 60.00216 * 18 17 15 38 38 H 1.09000 * 109.47337 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.47032 * 239.99427 * 19 18 17 40 40 H 1.09009 * 109.47051 * 119.99710 * 19 18 17 41 41 H 1.09006 * 109.47001 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.47007 * 299.99708 * 21 20 19 43 43 H 1.09001 * 109.46619 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47216 * 239.99639 * 22 21 20 45 45 H 1.08999 * 109.47161 * 119.99534 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 7 1.7966 -6.0884 -0.0018 13 6 1.1227 -7.2556 -0.0019 14 8 -0.0901 -7.2556 -0.0020 15 6 1.8762 -8.5607 0.0037 16 1 2.5032 -8.6144 0.8937 17 6 0.8821 -9.7236 0.0093 18 6 1.6470 -11.0486 0.0144 19 6 2.5259 -11.1349 -1.2350 20 6 2.3463 -9.8677 -2.0734 21 6 0.8799 -9.7351 -2.4894 22 6 0.0011 -9.6487 -1.2400 23 6 2.7554 -8.6473 -1.2454 24 1 2.6284 -7.7443 -1.8426 25 6 4.2216 -8.7805 -0.8289 26 9 4.3586 -9.8531 0.0588 27 9 5.0094 -9.0095 -1.9621 28 9 4.6374 -7.6007 -0.2025 29 1 -0.4849 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 2.6848 -3.7144 0.8895 32 1 2.6850 -3.7144 -0.8905 33 1 0.4378 -4.7618 -0.8914 34 1 0.4370 -4.7621 0.8885 35 1 2.7665 -6.0883 -0.0021 36 1 0.2557 -9.6619 0.8992 37 1 2.2743 -11.1026 0.9043 38 1 0.9388 -11.8771 0.0188 39 1 2.2350 -12.0044 -1.8244 40 1 3.5706 -11.2299 -0.9386 41 1 2.9727 -9.9291 -2.9633 42 1 0.5893 -10.6048 -3.0787 43 1 0.7520 -8.8320 -3.0863 44 1 -0.7069 -10.4774 -1.2359 45 1 -0.5442 -8.7050 -1.2439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127617572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:47 Heat of formation + Delta-G solvation = -193.366012 kcal Electronic energy + Delta-G solvation = -30837.042967 eV Core-core repulsion = 26245.773424 eV Total energy + Delta-G solvation = -4591.269543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -50.52036 -47.97689 -47.91083 -41.43838 -38.80648 -35.75905 -34.03682 -32.68224 -31.99798 -31.08899 -31.07407 -27.92349 -26.24435 -23.93538 -23.02505 -22.81544 -22.27177 -21.48760 -20.48018 -18.92848 -18.71592 -18.37347 -17.67339 -17.13781 -16.86871 -16.21147 -16.01205 -15.34244 -15.15194 -14.88385 -14.68122 -14.54777 -14.45501 -14.26521 -14.13122 -14.01206 -13.84629 -13.35207 -13.18781 -12.97551 -12.89911 -12.55520 -12.38844 -12.35684 -12.31609 -12.23918 -11.93155 -11.41915 -11.20420 -11.12497 -10.84102 -10.83477 -10.55728 -10.29798 -10.21907 -10.08725 -9.82290 -9.52652 -9.01331 -8.86350 -7.01142 -5.81240 -3.12003 2.30934 2.57712 3.06651 3.41308 3.45292 3.47756 3.49337 3.55979 3.64493 4.12122 4.23468 4.35383 4.56574 4.64581 4.65232 4.75924 4.77837 4.86858 4.90051 5.07817 5.13508 5.24542 5.30964 5.42833 5.48326 5.51266 5.53182 5.73738 5.75092 5.81738 5.90638 5.92579 5.98079 6.04084 6.08605 6.11296 6.30135 6.48297 6.67268 6.70291 7.50638 7.65479 8.20122 8.36361 9.47864 10.02031 10.36952 11.41384 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018859 B = 0.002822 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.335726 B = 9919.019825 C =10811.727044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.110 3.890 12 N -0.723 5.723 13 C 0.516 3.484 14 O -0.526 6.526 15 C -0.099 4.099 16 H 0.106 0.894 17 C -0.061 4.061 18 C -0.114 4.114 19 C -0.134 4.134 20 C -0.080 4.080 21 C -0.110 4.110 22 C -0.129 4.129 23 C -0.124 4.124 24 H 0.120 0.880 25 C 0.454 3.546 26 F -0.174 7.174 27 F -0.179 7.179 28 F -0.181 7.181 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.514 -27.148 -2.988 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.013 4.013 12 N -0.375 5.375 13 C 0.301 3.699 14 O -0.403 6.403 15 C -0.121 4.121 16 H 0.124 0.876 17 C -0.080 4.080 18 C -0.152 4.152 19 C -0.172 4.172 20 C -0.099 4.099 21 C -0.148 4.148 22 C -0.166 4.166 23 C -0.144 4.144 24 H 0.138 0.862 25 C 0.400 3.600 26 F -0.155 7.155 27 F -0.161 7.161 28 F -0.162 7.162 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.234 0.766 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.801 -26.997 -2.975 27.773 hybrid contribution 1.028 1.063 0.102 1.483 sum 6.829 -25.934 -2.874 26.971 Atomic orbital electron populations 1.69677 1.05149 1.25742 1.57299 1.24778 0.95567 0.97821 1.02657 0.86081 0.78762 0.83864 0.77240 1.20482 1.21767 1.21759 1.19243 0.91087 0.83828 1.43297 0.90962 1.42189 1.05987 0.99548 1.89709 1.20765 0.93495 0.85701 0.98511 1.21614 0.95445 0.81566 1.02697 1.46060 1.10624 1.06128 1.74659 1.20245 0.88166 0.84818 0.76652 1.90651 1.13533 1.87186 1.48887 1.21383 0.98079 0.94858 0.97731 0.87641 1.20801 0.95149 0.91789 1.00214 1.21574 0.98598 0.96962 0.98023 1.21935 1.01655 0.96885 0.96684 1.21086 0.98661 0.92392 0.97739 1.21530 0.92705 1.02345 0.98210 1.21845 0.97668 1.04486 0.92646 1.22583 0.88052 1.04346 0.99388 0.86197 1.20580 0.90682 0.73684 0.75018 1.93104 1.96608 1.56077 1.69757 1.93188 1.77256 1.94423 1.51194 1.93195 1.91926 1.47935 1.83164 0.93406 0.78004 0.95735 0.95798 0.91118 0.91085 0.76635 0.89644 0.91563 0.91245 0.91211 0.90262 0.89510 0.91167 0.91652 0.91849 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.73 -18.46 5.60 -59.91 -0.34 -18.80 16 10 C 0.14 2.81 6.37 -4.04 -0.03 2.78 16 11 C 0.11 1.85 5.79 -4.04 -0.02 1.83 16 12 N -0.72 -9.68 5.31 -60.30 -0.32 -10.00 16 13 C 0.52 6.74 6.60 -10.98 -0.07 6.67 16 14 O -0.53 -8.52 13.66 5.56 0.08 -8.44 16 15 C -0.10 -0.96 1.88 -91.78 -0.17 -1.13 16 16 H 0.11 0.94 7.13 -51.93 -0.37 0.57 16 17 C -0.06 -0.55 2.36 -90.59 -0.21 -0.76 16 18 C -0.11 -0.82 5.35 -26.74 -0.14 -0.96 16 19 C -0.13 -0.92 5.13 -26.73 -0.14 -1.06 16 20 C -0.08 -0.60 2.54 -90.59 -0.23 -0.83 16 21 C -0.11 -0.88 5.71 -26.73 -0.15 -1.03 16 22 C -0.13 -1.22 5.39 -26.71 -0.14 -1.36 16 23 C -0.12 -1.06 1.82 -90.60 -0.17 -1.23 16 24 H 0.12 1.06 7.45 -51.93 -0.39 0.67 16 25 C 0.45 4.06 2.39 37.16 0.09 4.14 16 26 F -0.17 -1.52 12.72 2.25 0.03 -1.49 16 27 F -0.18 -1.68 16.55 2.25 0.04 -1.64 16 28 F -0.18 -1.79 16.09 2.25 0.04 -1.76 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.39 10.31 7.67 -40.82 -0.31 10.00 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.40 4.66 7.30 -40.82 -0.30 4.36 16 36 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.07 0.47 7.88 -51.92 -0.41 0.06 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.57 5.47 -51.92 -0.28 0.28 16 41 H 0.09 0.59 7.65 -51.93 -0.40 0.20 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.10 1.18 5.51 -51.93 -0.29 0.90 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -31.20 354.27 -7.59 -38.79 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.52 Total: 8.51 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.64 Total: -0.33 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.07 Total: -56.24 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.10 Total: -4.89 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.20 -7.59 -38.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127617572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.579 kcal (2) G-P(sol) polarization free energy of solvation -31.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds