Wall clock time and date at job start Tue Mar 31 2020 21:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99890 * 2 1 4 4 H 1.48494 * 109.47248 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47357 * 300.00526 * 3 2 1 6 6 H 1.48503 * 109.46997 * 60.00160 * 3 2 1 7 7 C 1.38808 * 120.00414 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99563 * 359.97438 * 7 2 1 10 10 C 1.46506 * 119.99880 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47323 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47130 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99679 * 179.97438 * 12 11 10 14 14 O 1.21273 * 119.99817 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99609 * 180.27482 * 13 12 11 16 16 H 1.09001 * 109.47295 * 59.72377 * 15 13 12 17 17 C 1.52999 * 109.47107 * 179.72450 * 15 13 12 18 18 C 1.52997 * 109.47391 * 179.97438 * 17 15 13 19 19 C 1.52995 * 109.47256 * 300.00325 * 18 17 15 20 20 C 1.53000 * 109.47144 * 359.97438 * 19 18 17 21 21 C 1.52999 * 109.47040 * 300.00029 * 20 19 18 22 22 C 1.52995 * 109.47176 * 59.99991 * 21 20 19 23 23 C 1.52995 * 109.47228 * 299.72584 * 15 13 12 24 24 H 1.09006 * 109.47709 * 0.02562 * 23 15 13 25 25 C 1.52999 * 109.47176 * 120.00007 * 23 15 13 26 26 F 1.39900 * 109.47073 * 53.44500 * 25 23 15 27 27 F 1.39905 * 109.47145 * 173.44066 * 25 23 15 28 28 F 1.39896 * 109.47241 * 293.44280 * 25 23 15 29 29 H 0.96995 * 119.99695 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00268 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46782 * 60.00150 * 10 9 7 32 32 H 1.09001 * 109.47142 * 300.00641 * 10 9 7 33 33 H 1.08999 * 109.46782 * 59.99928 * 11 10 9 34 34 H 1.09002 * 109.46958 * 300.00635 * 11 10 9 35 35 H 0.96992 * 120.00046 * 359.97438 * 12 11 10 36 36 H 1.09000 * 109.47118 * 300.00086 * 17 15 13 37 37 H 1.09010 * 109.46816 * 60.00216 * 18 17 15 38 38 H 1.09000 * 109.47337 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.47032 * 239.99427 * 19 18 17 40 40 H 1.09009 * 109.47051 * 119.99710 * 19 18 17 41 41 H 1.09006 * 109.47001 * 179.97438 * 20 19 18 42 42 H 1.09003 * 109.47007 * 299.99708 * 21 20 19 43 43 H 1.09001 * 109.46619 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47216 * 239.99639 * 22 21 20 45 45 H 1.08999 * 109.47161 * 119.99534 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 7 1.7966 -6.0884 -0.0018 13 6 1.1227 -7.2556 -0.0019 14 8 -0.0901 -7.2556 -0.0020 15 6 1.8762 -8.5607 0.0037 16 1 2.5032 -8.6144 0.8937 17 6 0.8821 -9.7236 0.0093 18 6 1.6470 -11.0486 0.0144 19 6 2.5259 -11.1349 -1.2350 20 6 2.3463 -9.8677 -2.0734 21 6 0.8799 -9.7351 -2.4894 22 6 0.0011 -9.6487 -1.2400 23 6 2.7554 -8.6473 -1.2454 24 1 2.6284 -7.7443 -1.8426 25 6 4.2216 -8.7805 -0.8289 26 9 4.3586 -9.8531 0.0588 27 9 5.0094 -9.0095 -1.9621 28 9 4.6374 -7.6007 -0.2025 29 1 -0.4849 0.8400 0.0004 30 1 0.3557 -2.3880 -0.0005 31 1 2.6848 -3.7144 0.8895 32 1 2.6850 -3.7144 -0.8905 33 1 0.4378 -4.7618 -0.8914 34 1 0.4370 -4.7621 0.8885 35 1 2.7665 -6.0883 -0.0021 36 1 0.2557 -9.6619 0.8992 37 1 2.2743 -11.1026 0.9043 38 1 0.9388 -11.8771 0.0188 39 1 2.2350 -12.0044 -1.8244 40 1 3.5706 -11.2299 -0.9386 41 1 2.9727 -9.9291 -2.9633 42 1 0.5893 -10.6048 -3.0787 43 1 0.7520 -8.8320 -3.0863 44 1 -0.7069 -10.4774 -1.2359 45 1 -0.5442 -8.7050 -1.2439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127617572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:46 Heat of formation + Delta-G solvation = -212.676002 kcal Electronic energy + Delta-G solvation = -30837.880311 eV Core-core repulsion = 26245.773424 eV Total energy + Delta-G solvation = -4592.106887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.23788 -48.69489 -48.63517 -42.26322 -39.82807 -37.33764 -35.62104 -33.72257 -32.92073 -32.60351 -31.70891 -29.49982 -27.16692 -25.61244 -24.03024 -23.47786 -23.17813 -22.84419 -21.54398 -19.69958 -19.44449 -19.34673 -19.09695 -18.37767 -17.68715 -17.18400 -16.76574 -16.58581 -16.52892 -16.18856 -15.62666 -15.48786 -15.33895 -15.18507 -15.09837 -15.00723 -14.89710 -14.79439 -14.69823 -14.08032 -13.66300 -13.37802 -13.15988 -13.10458 -13.03820 -13.01844 -12.94007 -12.88591 -12.71317 -12.57381 -12.50092 -12.06302 -11.87288 -11.83197 -11.37245 -11.02321 -10.94774 -10.84811 -10.54967 -10.13490 -9.08485 -7.98429 -5.29919 1.40343 1.47975 1.49055 1.59299 1.69752 1.97581 2.55752 2.72395 2.85230 2.90014 3.35958 3.38314 3.55433 3.59609 3.83298 3.95552 3.98378 4.05897 4.08642 4.14321 4.17025 4.19481 4.22872 4.50272 4.51019 4.54353 4.60688 4.70680 4.78500 4.84414 4.98600 5.09266 5.18576 5.24646 5.27774 5.33672 5.36160 5.40556 5.45369 5.47588 5.59937 6.22554 6.40803 7.11730 7.29050 7.99864 8.23496 9.25316 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018859 B = 0.002822 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.335726 B = 9919.019825 C =10811.727044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.075 4.075 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.249 4.249 8 H 0.082 0.918 9 N -0.746 5.746 10 C 0.147 3.853 11 C 0.128 3.872 12 N -0.716 5.716 13 C 0.516 3.484 14 O -0.558 6.558 15 C -0.091 4.091 16 H 0.118 0.882 17 C -0.061 4.061 18 C -0.109 4.109 19 C -0.132 4.132 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.122 4.122 24 H 0.117 0.883 25 C 0.458 3.542 26 F -0.171 7.171 27 F -0.180 7.180 28 F -0.187 7.187 29 H 0.253 0.747 30 H 0.375 0.625 31 H 0.034 0.966 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.437 -28.778 -3.332 30.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.100 0.900 9 N -0.389 5.389 10 C 0.020 3.980 11 C 0.003 3.997 12 N -0.369 5.369 13 C 0.303 3.697 14 O -0.437 6.437 15 C -0.112 4.112 16 H 0.136 0.864 17 C -0.080 4.080 18 C -0.146 4.146 19 C -0.169 4.169 20 C -0.096 4.096 21 C -0.145 4.145 22 C -0.166 4.166 23 C -0.142 4.142 24 H 0.135 0.865 25 C 0.404 3.596 26 F -0.152 7.152 27 F -0.161 7.161 28 F -0.169 7.169 29 H 0.061 0.939 30 H 0.207 0.793 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.246 0.754 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.106 0.894 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.784 -28.674 -3.319 29.896 hybrid contribution 0.421 1.494 0.213 1.567 sum 8.206 -27.179 -3.105 28.560 Atomic orbital electron populations 1.69838 1.06780 1.26248 1.59117 1.25652 0.96440 1.01385 1.03269 0.85009 0.78308 0.79350 0.76670 1.18700 1.21963 1.21996 1.19675 0.91695 0.84876 1.41751 0.90048 1.42406 1.05757 1.00987 1.89756 1.20853 0.93696 0.84351 0.99105 1.21175 0.94673 0.82343 1.01472 1.45917 1.11019 1.05141 1.74802 1.20871 0.87930 0.85586 0.75348 1.90654 1.15217 1.87693 1.50107 1.21363 0.98174 0.92743 0.98947 0.86445 1.20816 0.95024 0.92644 0.99504 1.21551 0.98722 0.95834 0.98523 1.21938 1.01554 0.96952 0.96453 1.21126 0.98297 0.92102 0.98120 1.21508 0.92838 1.02682 0.97446 1.21780 0.98041 1.03051 0.93742 1.22573 0.87678 1.05083 0.98825 0.86495 1.20535 0.90556 0.73537 0.74946 1.93115 1.96593 1.55850 1.69651 1.93189 1.77276 1.94410 1.51258 1.93184 1.92002 1.48398 1.83294 0.93857 0.79346 0.94790 0.94647 0.92314 0.92508 0.75365 0.90856 0.91157 0.90094 0.89682 0.90212 0.88301 0.89397 0.92691 0.90912 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.70 13.06 21.65 0.28 -59.42 16 2 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 3 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.75 -38.03 5.60 -343.44 -1.92 -39.96 16 10 C 0.15 5.68 6.37 86.38 0.55 6.23 16 11 C 0.13 4.34 5.79 86.38 0.50 4.84 16 12 N -0.72 -18.88 5.31 -463.07 -2.46 -21.34 16 13 C 0.52 13.41 6.60 87.66 0.58 13.99 16 14 O -0.56 -18.57 13.66 -3.01 -0.04 -18.61 16 15 C -0.09 -1.65 1.88 -11.54 -0.02 -1.67 16 16 H 0.12 1.88 7.13 -2.39 -0.02 1.86 16 17 C -0.06 -1.03 2.36 -10.78 -0.03 -1.06 16 18 C -0.11 -1.29 5.35 30.59 0.16 -1.13 16 19 C -0.13 -1.41 5.13 30.59 0.16 -1.25 16 20 C -0.08 -0.98 2.54 -10.78 -0.03 -1.01 16 21 C -0.11 -1.54 5.71 30.59 0.17 -1.36 16 22 C -0.13 -2.34 5.39 30.61 0.16 -2.18 16 23 C -0.12 -1.88 1.82 -10.78 -0.02 -1.90 16 24 H 0.12 1.91 7.45 -2.38 -0.02 1.89 16 25 C 0.46 7.22 2.39 71.98 0.17 7.40 16 26 F -0.17 -2.56 12.72 44.97 0.57 -1.98 16 27 F -0.18 -2.97 16.55 44.97 0.74 -2.23 16 28 F -0.19 -3.37 16.09 44.97 0.72 -2.65 16 29 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.37 20.54 7.67 -92.71 -0.71 19.83 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.41 9.09 7.30 -92.71 -0.68 8.41 16 36 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 37 H 0.07 0.80 7.88 -2.38 -0.02 0.78 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.08 0.89 5.47 -2.38 -0.01 0.88 16 41 H 0.10 1.07 7.65 -2.38 -0.02 1.05 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.60 5.51 -2.39 -0.01 1.59 16 Total: -1.00 -66.85 354.27 3.25 -63.60 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.35 Total: 30.65 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 3.67 Total: 4.08 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.10 Total: -120.71 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.04 Total: -18.61 kcal Atomic # 9 Polarization: -8.90 SS G_CDS: 2.04 Total: -6.86 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -66.85 3.25 -63.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127617572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.073 kcal (2) G-P(sol) polarization free energy of solvation -66.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds