Wall clock time and date at job start Tue Mar 31 2020 19:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09001 * 109.46555 * 305.00314 * 5 4 2 7 7 C 1.53000 * 109.47280 * 185.00345 * 5 4 2 8 8 N 1.46498 * 109.47042 * 65.00151 * 5 4 2 9 9 C 1.34775 * 120.00097 * 205.00659 * 8 5 4 10 10 O 1.21635 * 119.99828 * 359.97438 * 9 8 5 11 11 C 1.47266 * 120.00369 * 180.02562 * 9 8 5 12 12 N 1.34841 * 126.03649 * 359.68619 * 11 9 8 13 13 C 1.32133 * 109.12286 * 179.82363 * 12 11 9 14 14 C 1.41280 * 131.86817 * 180.14349 * 13 12 11 15 15 C 1.35837 * 119.37331 * 180.31828 * 14 13 12 16 16 C 1.40647 * 119.78174 * 0.02562 * 15 14 13 17 17 C 1.34783 * 120.35248 * 0.02562 * 16 15 14 18 18 N 1.36854 * 120.63219 * 359.97438 * 17 16 15 19 19 C 1.36252 * 132.19861 * 180.02562 * 18 17 16 20 20 F 1.35100 * 126.55923 * 359.97438 * 19 18 17 21 21 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 2 1 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 2 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 2 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 32 32 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 33 33 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 34 34 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 35 35 H 1.09005 * 109.46977 * 299.99864 * 7 5 4 36 36 H 1.08991 * 109.47284 * 59.99353 * 7 5 4 37 37 H 1.09002 * 109.46964 * 180.02562 * 7 5 4 38 38 H 0.96996 * 120.00030 * 25.00106 * 8 5 4 39 39 H 1.08003 * 120.31750 * 0.30169 * 14 13 12 40 40 H 1.08005 * 120.11503 * 179.97438 * 15 14 13 41 41 H 1.07993 * 119.82807 * 179.97438 * 16 15 14 42 42 H 1.08000 * 119.68107 * 180.02562 * 17 16 15 43 43 H 0.97000 * 119.99792 * 94.99575 * 21 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2676 7 6 4.0646 -1.2253 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3747 -0.9913 0.2736 10 8 5.9880 -0.0834 -0.2546 11 6 5.9668 -1.7164 1.4105 12 7 5.3957 -2.7335 2.0868 13 6 6.2193 -3.1375 3.0377 14 6 6.1092 -4.1560 4.0107 15 6 7.1281 -4.3532 4.8871 16 6 8.2765 -3.5442 4.8168 17 6 8.3707 -2.5747 3.8852 18 7 7.3536 -2.3624 2.9945 19 6 7.1998 -1.4696 1.9768 20 9 8.0863 -0.5246 1.5944 21 7 2.0183 -0.6906 1.1963 22 6 2.1491 -0.0075 2.3757 23 1 1.8919 1.0404 2.4243 24 6 2.6062 -0.6633 3.5106 25 7 2.9191 -1.9403 3.4515 26 14 2.7773 0.2668 5.1216 27 1 1.5060 0.1751 5.8835 28 1 3.8779 -0.3276 5.9219 29 1 3.0840 1.6923 4.8400 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5139 -0.8901 33 1 1.7516 -1.7716 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.7723 -2.2744 -2.6698 36 1 3.6265 -0.6890 -3.4656 37 1 5.1510 -1.1488 -2.6695 38 1 3.6646 -2.0586 0.2388 39 1 5.2231 -4.7717 4.0574 40 1 7.0564 -5.1281 5.6360 41 1 9.0868 -3.7001 5.5134 42 1 9.2576 -1.9602 3.8407 43 1 2.2489 -1.6318 1.1527 44 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135855110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:17 Heat of formation + Delta-G solvation = 34.999558 kcal Electronic energy + Delta-G solvation = -30220.033037 eV Core-core repulsion = 26089.355355 eV Total energy + Delta-G solvation = -4130.677682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.66782 -42.41774 -39.13595 -37.13956 -36.48633 -34.04199 -33.50952 -32.09653 -30.83461 -29.79791 -28.39309 -28.26548 -26.24984 -24.54988 -23.48865 -22.61540 -22.52496 -20.82429 -20.10895 -19.45711 -18.30620 -17.09414 -17.03156 -16.83378 -16.54469 -15.71017 -15.49661 -15.13684 -14.74627 -14.60056 -14.33986 -14.15294 -13.72352 -13.69737 -13.45945 -13.13803 -12.82993 -12.60061 -12.23603 -12.06029 -11.83935 -11.78901 -11.64475 -11.56937 -11.43892 -10.90878 -10.82672 -10.78118 -10.62863 -10.28427 -10.16942 -9.87148 -9.79369 -9.55006 -9.40348 -8.82958 -8.63938 -8.23660 -7.55895 -6.76454 -5.58823 -2.85627 0.77500 1.27154 2.24232 2.44364 3.46059 3.51406 3.54521 3.55537 3.77997 4.14809 4.32881 4.46449 4.58917 4.69165 4.91020 4.92032 5.13437 5.18664 5.44804 5.53448 5.57884 5.65375 5.70999 5.78608 5.80403 5.98220 6.05389 6.06942 6.11041 6.23095 6.23911 6.34284 6.44495 6.49258 6.51668 6.64225 6.71611 6.71848 6.95822 7.11810 7.15670 7.26071 7.85230 7.91167 8.34399 8.55125 8.94416 9.67257 10.22465 10.58308 11.59322 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.005658 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.438150 B = 4947.318956 C = 6502.058124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.046 0.954 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.084 0.916 7 C -0.162 4.162 8 N -0.675 5.675 9 C 0.611 3.389 10 O -0.554 6.554 11 C 0.024 3.976 12 N -0.368 5.368 13 C 0.234 3.766 14 C -0.044 4.044 15 C -0.124 4.124 16 C -0.131 4.131 17 C 0.041 3.959 18 N -0.383 5.383 19 C 0.154 3.846 20 F -0.084 7.084 21 N -0.714 5.714 22 C -0.238 4.238 23 H 0.062 0.938 24 C -0.002 4.002 25 N -0.898 5.898 26 Si 0.886 3.114 27 H -0.293 1.293 28 H -0.297 1.297 29 H -0.286 1.286 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.415 0.585 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.149 0.851 42 H 0.159 0.841 43 H 0.380 0.620 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -6.645 -2.901 10.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.059 3.941 3 H 0.064 0.936 4 C -0.172 4.172 5 C 0.044 3.956 6 H 0.102 0.898 7 C -0.221 4.221 8 N -0.326 5.326 9 C 0.396 3.604 10 O -0.433 6.433 11 C -0.114 4.114 12 N -0.086 5.086 13 C -0.010 4.010 14 C -0.064 4.064 15 C -0.148 4.148 16 C -0.151 4.151 17 C -0.079 4.079 18 N -0.061 5.061 19 C 0.020 3.980 20 F -0.063 7.063 21 N -0.358 5.358 22 C -0.370 4.370 23 H 0.080 0.920 24 C -0.199 4.199 25 N -0.545 5.545 26 Si 0.718 3.282 27 H -0.221 1.221 28 H -0.224 1.224 29 H -0.213 1.213 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.254 0.746 39 H 0.176 0.824 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.216 0.784 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.653 -6.129 -3.392 10.375 hybrid contribution 0.980 0.677 1.736 2.106 sum 8.633 -5.452 -1.656 10.344 Atomic orbital electron populations 1.22423 0.99487 1.00624 0.99746 1.20266 0.91636 0.95678 0.86527 0.93612 1.22209 0.93762 1.01733 0.99456 1.20863 0.92674 0.97286 0.84752 0.89790 1.22212 1.01792 1.00913 0.97164 1.45718 1.16847 1.37230 1.32848 1.16487 0.81649 0.81783 0.80493 1.90765 1.62628 1.30604 1.59317 1.20728 0.90220 0.99792 1.00610 1.71244 1.23045 1.10070 1.04286 1.20701 0.82663 0.96712 1.00939 1.20423 1.00011 0.94581 0.91419 1.20970 0.93233 1.00717 0.99859 1.20751 0.99952 0.95833 0.98595 1.21586 0.92531 1.01291 0.92456 1.42762 1.16253 1.24962 1.22153 1.17481 0.92180 0.92501 0.95850 1.91605 1.66640 1.59339 1.88731 1.42421 1.77902 1.10255 1.05210 1.19023 1.37209 0.93519 0.87215 0.91977 1.24570 1.02477 0.95966 0.96934 1.69651 1.49684 1.07506 1.27628 0.86519 0.76938 0.79206 0.85529 1.22052 1.22400 1.21252 0.93647 0.92970 0.94760 0.91655 0.90806 0.92708 0.92056 0.92382 0.74592 0.82370 0.84102 0.83373 0.82353 0.78424 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.17 3.26 2.89 -67.93 -0.20 3.06 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -2.08 4.43 -26.73 -0.12 -2.20 16 5 C 0.15 2.53 2.57 -67.93 -0.17 2.36 16 6 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 7 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 8 N -0.67 -13.27 3.80 -54.93 -0.21 -13.48 16 9 C 0.61 13.49 7.77 -12.59 -0.10 13.39 16 10 O -0.55 -13.16 16.13 5.25 0.08 -13.08 16 11 C 0.02 0.52 6.99 -83.00 -0.58 -0.06 16 12 N -0.37 -7.75 10.22 -9.04 -0.09 -7.84 16 13 C 0.23 4.32 7.79 -155.92 -1.21 3.11 16 14 C -0.04 -0.65 10.11 -39.29 -0.40 -1.04 16 15 C -0.12 -1.38 10.06 -39.53 -0.40 -1.77 16 16 C -0.13 -1.36 9.98 -39.90 -0.40 -1.76 16 17 C 0.04 0.54 10.93 -16.53 -0.18 0.36 16 18 N -0.38 -6.68 2.94 -62.42 -0.18 -6.87 16 19 C 0.15 3.09 8.84 -15.71 -0.14 2.95 16 20 F -0.08 -1.65 16.82 2.25 0.04 -1.62 16 21 N -0.71 -16.69 3.84 -53.42 -0.21 -16.90 16 22 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 23 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 24 C 0.00 -0.05 5.50 -17.43 -0.10 -0.15 16 25 N -0.90 -24.30 12.26 55.49 0.68 -23.62 16 26 Si 0.89 22.62 29.55 -169.99 -5.02 17.59 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.41 8.46 6.21 -40.82 -0.25 8.20 16 39 H 0.16 2.11 8.06 -52.48 -0.42 1.69 16 40 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.38 9.19 5.70 -40.82 -0.23 8.95 16 44 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 374.73 15.07 5.65 5.65 Total: -1.00 -31.87 374.73 -8.62 -40.48 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.92 Total: 12.47 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: -3.43 Total: 7.22 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.01 Total: -68.71 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.87 -8.62 -40.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135855110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.483 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds