Wall clock time and date at job start Tue Mar 31 2020 19:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 H 1.09001 * 109.46555 * 305.00314 * 5 4 2 7 7 C 1.53000 * 109.47280 * 185.00345 * 5 4 2 8 8 N 1.46498 * 109.47042 * 65.00151 * 5 4 2 9 9 C 1.34775 * 120.00097 * 205.00659 * 8 5 4 10 10 O 1.21635 * 119.99828 * 359.97438 * 9 8 5 11 11 C 1.47266 * 120.00369 * 180.02562 * 9 8 5 12 12 N 1.34841 * 126.03649 * 359.68619 * 11 9 8 13 13 C 1.32133 * 109.12286 * 179.82363 * 12 11 9 14 14 C 1.41280 * 131.86817 * 180.14349 * 13 12 11 15 15 C 1.35837 * 119.37331 * 180.31828 * 14 13 12 16 16 C 1.40647 * 119.78174 * 0.02562 * 15 14 13 17 17 C 1.34783 * 120.35248 * 0.02562 * 16 15 14 18 18 N 1.36854 * 120.63219 * 359.97438 * 17 16 15 19 19 C 1.36252 * 132.19861 * 180.02562 * 18 17 16 20 20 F 1.35100 * 126.55923 * 359.97438 * 19 18 17 21 21 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 22 22 C 1.36931 * 119.99788 * 274.99780 * 21 2 1 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 2 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 2 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 32 32 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 33 33 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 34 34 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 35 35 H 1.09005 * 109.46977 * 299.99864 * 7 5 4 36 36 H 1.08991 * 109.47284 * 59.99353 * 7 5 4 37 37 H 1.09002 * 109.46964 * 180.02562 * 7 5 4 38 38 H 0.96996 * 120.00030 * 25.00106 * 8 5 4 39 39 H 1.08003 * 120.31750 * 0.30169 * 14 13 12 40 40 H 1.08005 * 120.11503 * 179.97438 * 15 14 13 41 41 H 1.07993 * 119.82807 * 179.97438 * 16 15 14 42 42 H 1.08000 * 119.68107 * 180.02562 * 17 16 15 43 43 H 0.97000 * 119.99792 * 94.99575 * 21 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2676 7 6 4.0646 -1.2253 -2.6239 8 7 4.1536 -1.3344 -0.1823 9 6 5.3747 -0.9913 0.2736 10 8 5.9880 -0.0834 -0.2546 11 6 5.9668 -1.7164 1.4105 12 7 5.3957 -2.7335 2.0868 13 6 6.2193 -3.1375 3.0377 14 6 6.1092 -4.1560 4.0107 15 6 7.1281 -4.3532 4.8871 16 6 8.2765 -3.5442 4.8168 17 6 8.3707 -2.5747 3.8852 18 7 7.3536 -2.3624 2.9945 19 6 7.1998 -1.4696 1.9768 20 9 8.0863 -0.5246 1.5944 21 7 2.0183 -0.6906 1.1963 22 6 2.1491 -0.0075 2.3757 23 1 1.8919 1.0404 2.4243 24 6 2.6062 -0.6633 3.5106 25 7 2.9191 -1.9403 3.4515 26 14 2.7773 0.2668 5.1216 27 1 1.5060 0.1751 5.8835 28 1 3.8779 -0.3276 5.9219 29 1 3.0840 1.6923 4.8400 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5139 -0.8901 33 1 1.7516 -1.7716 -1.2055 34 1 1.6055 -0.2618 -2.1369 35 1 3.7723 -2.2744 -2.6698 36 1 3.6265 -0.6890 -3.4656 37 1 5.1510 -1.1488 -2.6695 38 1 3.6646 -2.0586 0.2388 39 1 5.2231 -4.7717 4.0574 40 1 7.0564 -5.1281 5.6360 41 1 9.0868 -3.7001 5.5134 42 1 9.2576 -1.9602 3.8407 43 1 2.2489 -1.6318 1.1527 44 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135855110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:04 Heat of formation + Delta-G solvation = 15.890884 kcal Electronic energy + Delta-G solvation = -30220.861651 eV Core-core repulsion = 26089.355355 eV Total energy + Delta-G solvation = -4131.506297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 13.86 seconds Orbital eigenvalues (eV) -50.14729 -43.71332 -40.70050 -38.44396 -37.95001 -35.73359 -34.72734 -33.90512 -32.30801 -31.09245 -30.10832 -29.55754 -27.57263 -25.85753 -25.45835 -23.86827 -23.73862 -22.24006 -21.64636 -21.02201 -19.61033 -19.00565 -18.43034 -18.17415 -17.95069 -17.11490 -16.85576 -16.57448 -16.17176 -15.95260 -15.78093 -15.63526 -15.48529 -15.33429 -14.93380 -14.63951 -14.28451 -14.15442 -13.56007 -13.29278 -13.25845 -13.16616 -12.88996 -12.78080 -12.77080 -12.68525 -12.61620 -12.25912 -12.14345 -11.96098 -11.70464 -11.53120 -11.38647 -11.32209 -11.01782 -10.79836 -10.03493 -9.72639 -8.83172 -8.69139 -7.67898 -4.91813 -0.36881 0.04712 0.96321 1.08213 1.38963 1.40738 1.45982 2.22936 2.39770 2.61953 2.66673 3.07765 3.25381 3.41573 3.59325 3.68546 3.82774 3.94182 4.05552 4.15791 4.20574 4.21856 4.41302 4.59710 4.62825 4.71694 4.72716 4.86627 4.90408 4.94144 5.09021 5.10440 5.15770 5.19033 5.23617 5.29420 5.38655 5.45718 5.53881 5.66299 5.67647 5.75334 5.92800 6.46968 6.50443 6.77538 7.32050 7.57026 8.30634 8.57491 9.48250 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010570 B = 0.005658 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.438150 B = 4947.318956 C = 6502.058124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 H 0.025 0.975 4 C -0.118 4.118 5 C 0.142 3.858 6 H 0.059 0.941 7 C -0.151 4.151 8 N -0.668 5.668 9 C 0.600 3.400 10 O -0.586 6.586 11 C -0.005 4.005 12 N -0.406 5.406 13 C 0.227 3.773 14 C -0.084 4.084 15 C -0.087 4.087 16 C -0.107 4.107 17 C 0.012 3.988 18 N -0.380 5.380 19 C 0.125 3.875 20 F -0.090 7.090 21 N -0.718 5.718 22 C -0.245 4.245 23 H 0.047 0.953 24 C -0.039 4.039 25 N -0.898 5.898 26 Si 0.926 3.074 27 H -0.290 1.290 28 H -0.302 1.302 29 H -0.296 1.296 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.113 0.887 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.038 0.962 38 H 0.411 0.589 39 H 0.163 0.837 40 H 0.189 0.811 41 H 0.202 0.798 42 H 0.184 0.816 43 H 0.376 0.624 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.431 -8.448 -2.013 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.052 3.948 3 H 0.043 0.957 4 C -0.156 4.156 5 C 0.038 3.962 6 H 0.077 0.923 7 C -0.209 4.209 8 N -0.317 5.317 9 C 0.386 3.614 10 O -0.468 6.468 11 C -0.143 4.143 12 N -0.125 5.125 13 C -0.018 4.018 14 C -0.104 4.104 15 C -0.110 4.110 16 C -0.127 4.127 17 C -0.107 4.107 18 N -0.058 5.058 19 C -0.009 4.009 20 F -0.070 7.070 21 N -0.361 5.361 22 C -0.378 4.378 23 H 0.065 0.935 24 C -0.236 4.236 25 N -0.545 5.545 26 Si 0.759 3.241 27 H -0.217 1.217 28 H -0.229 1.229 29 H -0.223 1.223 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.131 0.869 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.057 0.943 38 H 0.250 0.750 39 H 0.181 0.819 40 H 0.206 0.794 41 H 0.219 0.781 42 H 0.201 0.799 43 H 0.210 0.790 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.088 -7.934 -2.523 11.607 hybrid contribution 0.927 1.148 1.614 2.187 sum 9.015 -6.786 -0.909 11.320 Atomic orbital electron populations 1.22253 0.97629 1.00953 1.00279 1.20487 0.92838 0.94750 0.86695 0.95659 1.22131 0.92417 1.02181 0.98918 1.21089 0.93726 0.95982 0.85371 0.92284 1.22109 1.00622 1.01941 0.96226 1.45802 1.16027 1.36791 1.33117 1.16785 0.82208 0.81649 0.80779 1.90711 1.63524 1.32028 1.60524 1.20776 0.91335 1.00855 1.01292 1.71141 1.24546 1.10871 1.05918 1.21375 0.82508 0.97115 1.00780 1.20723 1.02189 0.95012 0.92485 1.21634 0.91394 0.99942 0.98069 1.21484 1.00656 0.93193 0.97361 1.22426 0.92586 1.03125 0.92515 1.42858 1.17058 1.23892 1.21965 1.17468 0.92245 0.93744 0.97490 1.91562 1.66636 1.59724 1.89037 1.42443 1.78234 1.09954 1.05512 1.19067 1.36931 0.93033 0.88745 0.93526 1.24980 1.03336 0.96817 0.98493 1.69725 1.49786 1.07531 1.27451 0.85894 0.76573 0.77853 0.83803 1.21708 1.22903 1.22292 0.93333 0.95416 0.91229 0.90574 0.86889 0.91322 0.88983 0.94304 0.75036 0.81913 0.79427 0.78082 0.79912 0.78955 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.49 71.98 0.68 -4.47 16 2 C 0.16 6.19 2.89 44.99 0.13 6.32 16 3 H 0.03 1.08 8.08 -2.39 -0.02 1.06 16 4 C -0.12 -3.52 4.43 30.59 0.14 -3.38 16 5 C 0.14 4.87 2.57 44.99 0.12 4.99 16 6 H 0.06 2.32 7.58 -2.39 -0.02 2.30 16 7 C -0.15 -4.10 9.48 71.98 0.68 -3.42 16 8 N -0.67 -27.43 3.80 -445.94 -1.69 -29.12 16 9 C 0.60 28.22 7.77 86.62 0.67 28.90 16 10 O -0.59 -29.75 16.13 -4.14 -0.07 -29.82 16 11 C -0.01 -0.25 6.99 40.98 0.29 0.04 16 12 N -0.41 -17.90 10.22 -182.50 -1.86 -19.77 16 13 C 0.23 8.51 7.79 134.20 1.05 9.55 16 14 C -0.08 -2.33 10.11 22.46 0.23 -2.10 16 15 C -0.09 -1.54 10.06 22.30 0.22 -1.31 16 16 C -0.11 -1.71 9.98 22.06 0.22 -1.49 16 17 C 0.01 0.29 10.93 83.12 0.91 1.20 16 18 N -0.38 -13.38 2.94 -351.39 -1.03 -14.41 16 19 C 0.13 5.30 8.84 83.93 0.74 6.04 16 20 F -0.09 -3.77 16.82 44.97 0.76 -3.01 16 21 N -0.72 -34.34 3.84 -322.93 -1.24 -35.58 16 22 C -0.25 -13.61 9.93 84.04 0.83 -12.78 16 23 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 24 C -0.04 -2.21 5.50 84.86 0.47 -1.75 16 25 N -0.90 -49.56 12.26 21.65 0.27 -49.30 16 26 Si 0.93 47.32 29.55 68.60 2.03 49.35 16 27 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 28 H -0.30 -15.53 7.11 99.48 0.71 -14.82 16 29 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.41 17.48 6.21 -92.71 -0.58 16.91 16 39 H 0.16 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 43 H 0.38 18.58 5.70 -92.71 -0.53 18.05 16 44 H 0.24 13.40 8.31 -92.70 -0.77 12.63 16 Total: -1.00 -75.46 374.73 4.46 -71.00 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.06 Total: 34.33 kcal Atomic # 6 Polarization: 18.96 SS G_CDS: 7.38 Total: 26.34 kcal Atomic # 7 Polarization: -142.62 SS G_CDS: -5.57 Total: -148.18 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.07 Total: -29.82 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.76 Total: -3.01 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -75.46 4.46 -71.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135855110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.887 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.86 seconds