Wall clock time and date at job start Tue Mar 31 2020 19:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47077 * 2 1 4 4 C 1.52998 * 109.46924 * 119.99950 * 2 1 3 5 5 C 1.53005 * 109.46995 * 184.99901 * 4 2 1 6 6 H 1.09004 * 109.46694 * 304.99636 * 5 4 2 7 7 C 1.52998 * 109.47028 * 184.99834 * 5 4 2 8 8 N 1.46497 * 109.47274 * 64.99598 * 5 4 2 9 9 C 1.34776 * 120.00149 * 204.99914 * 8 5 4 10 10 O 1.21633 * 119.99760 * 0.02562 * 9 8 5 11 11 C 1.47263 * 119.99705 * 180.02562 * 9 8 5 12 12 N 1.34844 * 126.04574 * 0.04010 * 11 9 8 13 13 C 1.32130 * 109.12401 * 179.97438 * 12 11 9 14 14 C 1.41282 * 131.86548 * 180.02562 * 13 12 11 15 15 C 1.35833 * 119.37381 * 180.02562 * 14 13 12 16 16 C 1.40637 * 119.77946 * 359.97438 * 15 14 13 17 17 C 1.34777 * 120.35720 * 0.02562 * 16 15 14 18 18 N 1.36843 * 120.63575 * 0.02562 * 17 16 15 19 19 C 1.36250 * 132.20813 * 180.02562 * 18 17 16 20 20 F 1.35096 * 126.55664 * 0.24583 * 19 18 17 21 21 N 1.46503 * 109.46987 * 239.99499 * 2 1 3 22 22 C 1.36939 * 119.99791 * 85.00273 * 21 2 1 23 23 H 1.08003 * 119.99933 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99817 * 180.02562 * 22 21 2 25 25 N 1.31619 * 120.00176 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99846 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47356 * 59.99450 * 26 24 22 28 28 H 1.48501 * 109.47141 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47317 * 299.99980 * 26 24 22 30 30 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47064 * 300.00430 * 1 2 3 32 32 H 1.08998 * 109.47085 * 60.00150 * 1 2 3 33 33 H 1.09001 * 109.47591 * 64.99424 * 4 2 1 34 34 H 1.09002 * 109.47251 * 304.99579 * 4 2 1 35 35 H 1.09007 * 109.46985 * 59.99870 * 7 5 4 36 36 H 1.08996 * 109.47123 * 179.97438 * 7 5 4 37 37 H 1.09000 * 109.47532 * 300.00175 * 7 5 4 38 38 H 0.97005 * 119.99926 * 25.00156 * 8 5 4 39 39 H 1.08006 * 120.31111 * 359.96320 * 14 13 12 40 40 H 1.08005 * 120.11026 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.82071 * 180.02562 * 16 15 14 42 42 H 1.07999 * 119.68046 * 179.97438 * 17 16 15 43 43 H 0.97001 * 120.00214 * 265.00656 * 21 2 1 44 44 H 0.96998 * 120.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 1 3.9954 -0.9924 0.3868 7 6 4.0851 -1.4383 2.4925 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2134 1.0866 10 8 5.9379 0.4316 0.5717 11 6 5.5466 2.6233 1.2667 12 7 4.7859 3.5892 1.8204 13 6 5.4584 4.7266 1.8145 14 6 5.1246 6.0217 2.2696 15 6 6.0266 7.0284 2.1349 16 6 7.2778 6.7709 1.5467 17 6 7.5860 5.5316 1.1160 18 7 6.6888 4.5061 1.2429 19 6 6.7489 3.1894 0.8979 20 9 7.7900 2.5574 0.3133 21 7 2.0183 -0.6907 -1.1961 22 6 2.1492 -0.0076 -2.3758 23 1 1.8927 1.0404 -2.4242 24 6 2.6113 -0.6622 -3.5093 25 7 2.9243 -1.9393 -3.4501 26 14 2.7904 0.2697 -5.1182 27 1 3.7465 1.3915 -4.9368 28 1 3.2992 -0.6488 -6.1683 29 1 1.4685 0.8076 -5.5285 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6054 -0.2617 2.1370 35 1 3.8000 -2.4819 2.3595 36 1 5.1714 -1.3617 2.5382 37 1 3.6546 -1.0593 3.4194 38 1 3.3285 1.4129 1.9027 39 1 4.1608 6.2099 2.7195 40 1 5.7837 8.0231 2.4783 41 1 7.9957 7.5707 1.4396 42 1 8.5499 5.3462 0.6656 43 1 2.2490 -1.6319 -1.1526 44 1 3.2469 -2.3968 -4.2422 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135855111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:24 Heat of formation + Delta-G solvation = 22.141401 kcal Electronic energy + Delta-G solvation = -28845.109320 eV Core-core repulsion = 24713.874066 eV Total energy + Delta-G solvation = -4131.235254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -49.11026 -43.05424 -39.42989 -37.60649 -36.63332 -34.37796 -34.08784 -32.08277 -31.16037 -30.11726 -28.88650 -28.49206 -26.23392 -25.04283 -23.53102 -23.12601 -23.09251 -21.10272 -20.17134 -19.59043 -18.82671 -17.65661 -17.43548 -17.10876 -17.00601 -16.08680 -15.79918 -15.57472 -15.13382 -14.82602 -14.71921 -14.39727 -14.01411 -13.82228 -13.68042 -13.47775 -12.92459 -12.76163 -12.61929 -12.34918 -12.14807 -12.00775 -11.87508 -11.63900 -11.50230 -11.40957 -10.95616 -10.74971 -10.71260 -10.52915 -10.32030 -10.15475 -9.80848 -9.77907 -9.51717 -9.24031 -8.78079 -8.60552 -8.15693 -6.82089 -5.63737 -2.91008 0.22105 0.71428 1.66923 1.83481 2.97979 3.35557 3.51868 3.56286 3.57040 3.61114 3.68333 3.99589 4.08812 4.36745 4.41581 4.60108 4.70646 4.96073 5.07192 5.24356 5.26807 5.50650 5.51872 5.60232 5.69958 5.71139 5.79826 5.93347 5.99400 6.04407 6.06813 6.12995 6.24718 6.39684 6.45206 6.51681 6.54942 6.67624 6.80474 6.91456 7.02647 7.17402 7.20539 7.81565 7.90378 8.54733 8.56126 9.66178 10.24117 10.58588 11.59164 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003665 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.153392 B = 7638.566595 C = 8538.244060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.130 4.130 5 C 0.143 3.857 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.694 5.694 9 C 0.598 3.402 10 O -0.519 6.519 11 C 0.017 3.983 12 N -0.441 5.441 13 C 0.240 3.760 14 C -0.069 4.069 15 C -0.101 4.101 16 C -0.131 4.131 17 C 0.052 3.948 18 N -0.382 5.382 19 C 0.174 3.826 20 F -0.073 7.073 21 N -0.720 5.720 22 C -0.232 4.232 23 H 0.066 0.934 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.287 1.287 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.404 0.596 39 H 0.160 0.840 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.167 0.833 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.727 17.755 17.099 25.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.169 4.169 5 C 0.039 3.961 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.344 5.344 9 C 0.381 3.619 10 O -0.394 6.394 11 C -0.118 4.118 12 N -0.162 5.162 13 C -0.005 4.005 14 C -0.089 4.089 15 C -0.125 4.125 16 C -0.152 4.152 17 C -0.068 4.068 18 N -0.060 5.060 19 C 0.041 3.959 20 F -0.052 7.052 21 N -0.362 5.362 22 C -0.364 4.364 23 H 0.084 0.916 24 C -0.208 4.208 25 N -0.581 5.581 26 Si 0.733 3.267 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.214 1.214 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.239 0.761 39 H 0.178 0.822 40 H 0.165 0.835 41 H 0.173 0.827 42 H 0.184 0.816 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.575 17.027 16.817 24.819 hybrid contribution 1.052 0.630 -1.366 1.836 sum 7.627 17.657 15.451 24.671 Atomic orbital electron populations 1.22444 0.99525 1.00719 0.99761 1.20240 0.91572 0.95686 0.86490 0.93475 1.22164 0.93532 1.02226 0.98946 1.21113 0.95325 0.79591 1.00042 0.87458 1.22188 1.01558 1.00166 0.98017 1.45696 1.15603 1.11852 1.61289 1.16545 0.82907 0.83686 0.78734 1.90889 1.51420 1.54152 1.42937 1.20927 0.89924 0.95900 1.05048 1.70969 1.28370 0.96656 1.20187 1.20681 0.81517 0.96328 1.01962 1.20397 1.01596 0.86949 0.99947 1.21105 0.92869 0.99909 0.98578 1.20880 0.98616 0.95343 1.00322 1.21773 0.95292 0.86844 1.02872 1.42769 1.15398 1.07050 1.40831 1.17489 0.89333 0.81275 1.07852 1.91686 1.54340 1.77929 1.81197 1.42388 1.77993 1.10530 1.05272 1.19123 1.36263 0.93612 0.87360 0.91614 1.24668 1.02323 0.95926 0.97856 1.69633 1.51101 1.08572 1.28778 0.86348 0.77607 0.78711 0.84027 1.21514 1.21724 1.21438 0.93572 0.94672 0.92974 0.90492 0.91900 0.91586 0.92493 0.93019 0.76142 0.82235 0.83470 0.82675 0.81575 0.78343 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.49 37.16 0.35 -2.65 16 2 C 0.17 3.40 2.84 -67.93 -0.19 3.21 16 3 H 0.05 0.99 7.56 -51.93 -0.39 0.60 16 4 C -0.13 -2.10 4.29 -26.73 -0.11 -2.22 16 5 C 0.14 2.49 2.52 -67.93 -0.17 2.32 16 6 H 0.11 2.38 7.05 -51.93 -0.37 2.02 16 7 C -0.16 -2.35 9.48 37.16 0.35 -2.00 16 8 N -0.69 -11.77 4.44 -54.93 -0.24 -12.02 16 9 C 0.60 11.55 7.77 -12.59 -0.10 11.46 16 10 O -0.52 -11.89 16.13 5.25 0.08 -11.81 16 11 C 0.02 0.30 6.99 -82.99 -0.58 -0.28 16 12 N -0.44 -6.57 11.01 -9.03 -0.10 -6.67 16 13 C 0.24 2.96 7.79 -155.92 -1.21 1.74 16 14 C -0.07 -0.55 10.11 -39.29 -0.40 -0.95 16 15 C -0.10 -0.54 10.06 -39.54 -0.40 -0.94 16 16 C -0.13 -0.70 9.98 -39.90 -0.40 -1.10 16 17 C 0.05 0.43 10.93 -16.54 -0.18 0.25 16 18 N -0.38 -4.74 2.94 -62.42 -0.18 -4.93 16 19 C 0.17 2.76 8.84 -15.71 -0.14 2.62 16 20 F -0.07 -1.21 16.82 2.25 0.04 -1.17 16 21 N -0.72 -18.32 4.49 -53.42 -0.24 -18.56 16 22 C -0.23 -6.68 9.93 -15.06 -0.15 -6.83 16 23 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -29.18 13.06 55.49 0.72 -28.45 16 26 Si 0.90 23.61 29.55 -169.99 -5.02 18.58 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.40 6.01 8.30 -40.82 -0.34 5.67 16 39 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 40 H 0.15 0.31 8.06 -52.48 -0.42 -0.11 16 41 H 0.16 0.31 8.06 -52.49 -0.42 -0.11 16 42 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 44 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 380.51 15.07 5.73 5.73 Total: -1.00 -36.25 380.51 -8.67 -44.92 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.04 Total: 10.21 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -3.42 Total: 4.17 kcal Atomic # 7 Polarization: -70.59 SS G_CDS: -0.04 Total: -70.63 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.81 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.25 -8.67 -44.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135855111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.060 kcal (2) G-P(sol) polarization free energy of solvation -36.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds