Wall clock time and date at job start Tue Mar 31 2020 19:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47077 * 2 1 4 4 C 1.52998 * 109.46924 * 119.99950 * 2 1 3 5 5 C 1.53005 * 109.46995 * 184.99901 * 4 2 1 6 6 H 1.09004 * 109.46694 * 304.99636 * 5 4 2 7 7 C 1.52998 * 109.47028 * 184.99834 * 5 4 2 8 8 N 1.46497 * 109.47274 * 64.99598 * 5 4 2 9 9 C 1.34776 * 120.00149 * 204.99914 * 8 5 4 10 10 O 1.21633 * 119.99760 * 0.02562 * 9 8 5 11 11 C 1.47263 * 119.99705 * 180.02562 * 9 8 5 12 12 N 1.34844 * 126.04574 * 0.04010 * 11 9 8 13 13 C 1.32130 * 109.12401 * 179.97438 * 12 11 9 14 14 C 1.41282 * 131.86548 * 180.02562 * 13 12 11 15 15 C 1.35833 * 119.37381 * 180.02562 * 14 13 12 16 16 C 1.40637 * 119.77946 * 359.97438 * 15 14 13 17 17 C 1.34777 * 120.35720 * 0.02562 * 16 15 14 18 18 N 1.36843 * 120.63575 * 0.02562 * 17 16 15 19 19 C 1.36250 * 132.20813 * 180.02562 * 18 17 16 20 20 F 1.35096 * 126.55664 * 0.24583 * 19 18 17 21 21 N 1.46503 * 109.46987 * 239.99499 * 2 1 3 22 22 C 1.36939 * 119.99791 * 85.00273 * 21 2 1 23 23 H 1.08003 * 119.99933 * 0.02562 * 22 21 2 24 24 C 1.38813 * 119.99817 * 180.02562 * 22 21 2 25 25 N 1.31619 * 120.00176 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99846 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47356 * 59.99450 * 26 24 22 28 28 H 1.48501 * 109.47141 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47317 * 299.99980 * 26 24 22 30 30 H 1.08997 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47064 * 300.00430 * 1 2 3 32 32 H 1.08998 * 109.47085 * 60.00150 * 1 2 3 33 33 H 1.09001 * 109.47591 * 64.99424 * 4 2 1 34 34 H 1.09002 * 109.47251 * 304.99579 * 4 2 1 35 35 H 1.09007 * 109.46985 * 59.99870 * 7 5 4 36 36 H 1.08996 * 109.47123 * 179.97438 * 7 5 4 37 37 H 1.09000 * 109.47532 * 300.00175 * 7 5 4 38 38 H 0.97005 * 119.99926 * 25.00156 * 8 5 4 39 39 H 1.08006 * 120.31111 * 359.96320 * 14 13 12 40 40 H 1.08005 * 120.11026 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.82071 * 180.02562 * 16 15 14 42 42 H 1.07999 * 119.68046 * 179.97438 * 17 16 15 43 43 H 0.97001 * 120.00214 * 265.00656 * 21 2 1 44 44 H 0.96998 * 120.00024 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 1 3.9954 -0.9924 0.3868 7 6 4.0851 -1.4383 2.4925 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2134 1.0866 10 8 5.9379 0.4316 0.5717 11 6 5.5466 2.6233 1.2667 12 7 4.7859 3.5892 1.8204 13 6 5.4584 4.7266 1.8145 14 6 5.1246 6.0217 2.2696 15 6 6.0266 7.0284 2.1349 16 6 7.2778 6.7709 1.5467 17 6 7.5860 5.5316 1.1160 18 7 6.6888 4.5061 1.2429 19 6 6.7489 3.1894 0.8979 20 9 7.7900 2.5574 0.3133 21 7 2.0183 -0.6907 -1.1961 22 6 2.1492 -0.0076 -2.3758 23 1 1.8927 1.0404 -2.4242 24 6 2.6113 -0.6622 -3.5093 25 7 2.9243 -1.9393 -3.4501 26 14 2.7904 0.2697 -5.1182 27 1 3.7465 1.3915 -4.9368 28 1 3.2992 -0.6488 -6.1683 29 1 1.4685 0.8076 -5.5285 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6054 -0.2617 2.1370 35 1 3.8000 -2.4819 2.3595 36 1 5.1714 -1.3617 2.5382 37 1 3.6546 -1.0593 3.4194 38 1 3.3285 1.4129 1.9027 39 1 4.1608 6.2099 2.7195 40 1 5.7837 8.0231 2.4783 41 1 7.9957 7.5707 1.4396 42 1 8.5499 5.3462 0.6656 43 1 2.2490 -1.6319 -1.1526 44 1 3.2469 -2.3968 -4.2422 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135855111.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:20 Heat of formation + Delta-G solvation = -2.837266 kcal Electronic energy + Delta-G solvation = -28846.192476 eV Core-core repulsion = 24713.874066 eV Total energy + Delta-G solvation = -4132.318410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -50.29839 -43.96843 -40.85624 -38.55381 -38.09470 -36.09838 -34.90247 -34.02031 -32.41696 -31.18612 -30.40301 -29.77252 -27.60454 -26.07946 -25.63140 -24.02058 -23.92777 -22.42687 -21.59956 -21.19000 -19.78045 -19.32116 -18.62511 -18.34275 -18.16380 -17.18213 -17.00199 -16.65380 -16.27683 -16.07380 -15.90129 -15.80772 -15.65922 -15.43786 -15.05880 -14.80730 -14.51610 -14.28433 -13.62208 -13.39888 -13.30081 -13.20365 -12.96251 -12.93819 -12.88906 -12.79105 -12.66821 -12.28034 -12.23747 -12.09343 -11.84659 -11.74486 -11.56248 -11.43196 -11.27998 -10.91489 -10.25204 -9.95240 -9.03078 -8.94971 -7.92503 -5.17647 -0.53873 -0.10677 0.75342 0.81186 1.39079 1.43334 1.48464 2.04347 2.16142 2.42361 2.54989 2.77413 3.09675 3.26410 3.41271 3.49471 3.77718 3.86045 3.92644 4.02514 4.11708 4.14361 4.40139 4.53066 4.53623 4.60084 4.69067 4.79288 4.83980 4.93197 4.99867 5.02923 5.05461 5.10975 5.16905 5.22185 5.34114 5.40246 5.43446 5.48998 5.58844 5.64168 5.71884 6.18070 6.30942 6.54665 7.15254 7.36440 8.16766 8.37430 9.31157 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.003665 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.153392 B = 7638.566595 C = 8538.244060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 H 0.035 0.965 4 C -0.117 4.117 5 C 0.144 3.856 6 H 0.051 0.949 7 C -0.150 4.150 8 N -0.681 5.681 9 C 0.590 3.410 10 O -0.572 6.572 11 C -0.009 4.009 12 N -0.466 5.466 13 C 0.240 3.760 14 C -0.093 4.093 15 C -0.068 4.068 16 C -0.103 4.103 17 C 0.016 3.984 18 N -0.379 5.379 19 C 0.141 3.859 20 F -0.089 7.089 21 N -0.731 5.731 22 C -0.228 4.228 23 H 0.065 0.935 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.961 3.039 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.273 1.273 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.037 0.963 37 H 0.082 0.918 38 H 0.415 0.585 39 H 0.183 0.817 40 H 0.196 0.804 41 H 0.203 0.797 42 H 0.182 0.818 43 H 0.371 0.629 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.868 22.066 19.368 29.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.055 3.945 3 H 0.053 0.947 4 C -0.155 4.155 5 C 0.040 3.960 6 H 0.069 0.931 7 C -0.209 4.209 8 N -0.332 5.332 9 C 0.375 3.625 10 O -0.451 6.451 11 C -0.144 4.144 12 N -0.187 5.187 13 C -0.005 4.005 14 C -0.112 4.112 15 C -0.091 4.091 16 C -0.122 4.122 17 C -0.103 4.103 18 N -0.056 5.056 19 C 0.006 3.994 20 F -0.068 7.068 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.083 0.917 24 C -0.269 4.269 25 N -0.619 5.619 26 Si 0.791 3.209 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.199 1.199 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.101 0.899 38 H 0.252 0.748 39 H 0.200 0.800 40 H 0.213 0.787 41 H 0.220 0.780 42 H 0.199 0.801 43 H 0.203 0.797 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.663 21.403 19.139 29.265 hybrid contribution 1.355 -0.370 -1.931 2.388 sum 7.019 21.033 17.209 28.067 Atomic orbital electron populations 1.22277 0.97368 1.01030 1.00685 1.20513 0.92908 0.94990 0.86131 0.94659 1.22083 0.92249 1.02598 0.98545 1.21004 0.96138 0.80037 0.98851 0.93083 1.22087 1.00371 1.00459 0.97937 1.45625 1.15105 1.11975 1.60446 1.16977 0.82935 0.84625 0.77940 1.90837 1.52942 1.55874 1.45445 1.20583 0.91284 0.95315 1.07218 1.70873 1.28867 0.97215 1.21774 1.21520 0.81093 0.97128 1.00752 1.20871 1.03693 0.85373 1.01293 1.21781 0.91436 1.01039 0.94889 1.21590 0.99243 0.94791 0.96619 1.22489 0.95864 0.87054 1.04882 1.42855 1.16188 1.06316 1.40226 1.17503 0.89092 0.83045 1.09752 1.91616 1.54850 1.78648 1.81703 1.42572 1.78280 1.10094 1.06180 1.19453 1.34356 0.93657 0.88620 0.91666 1.25418 1.03424 0.96874 1.01136 1.69787 1.52971 1.09996 1.29136 0.85391 0.77896 0.77283 0.80348 1.21755 1.21939 1.19874 0.93544 0.90507 0.95239 0.89777 0.87510 0.90419 0.94427 0.89894 0.74781 0.79993 0.78658 0.78032 0.80075 0.79683 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.49 71.98 0.68 -4.69 16 2 C 0.16 6.48 2.84 44.99 0.13 6.61 16 3 H 0.04 1.49 7.56 -2.39 -0.02 1.47 16 4 C -0.12 -3.63 4.29 30.60 0.13 -3.50 16 5 C 0.14 5.16 2.52 44.99 0.11 5.28 16 6 H 0.05 2.45 7.05 -2.39 -0.02 2.43 16 7 C -0.15 -4.40 9.48 71.98 0.68 -3.71 16 8 N -0.68 -24.13 4.44 -445.94 -1.98 -26.11 16 9 C 0.59 24.71 7.77 86.62 0.67 25.38 16 10 O -0.57 -28.89 16.13 -4.14 -0.07 -28.96 16 11 C -0.01 -0.33 6.99 40.98 0.29 -0.04 16 12 N -0.47 -14.26 11.01 -182.49 -2.01 -16.27 16 13 C 0.24 5.73 7.79 134.20 1.05 6.78 16 14 C -0.09 -1.15 10.11 22.46 0.23 -0.92 16 15 C -0.07 -0.34 10.06 22.30 0.22 -0.11 16 16 C -0.10 -0.57 9.98 22.06 0.22 -0.35 16 17 C 0.02 0.23 10.93 83.12 0.91 1.14 16 18 N -0.38 -9.38 2.94 -351.40 -1.03 -10.42 16 19 C 0.14 4.80 8.84 83.93 0.74 5.54 16 20 F -0.09 -3.27 16.82 44.97 0.76 -2.52 16 21 N -0.73 -38.44 4.49 -322.93 -1.45 -39.89 16 22 C -0.23 -13.56 9.93 84.03 0.83 -12.73 16 23 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 24 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 25 N -0.97 -63.05 13.06 21.65 0.28 -62.76 16 26 Si 0.96 49.98 29.55 68.60 2.03 52.00 16 27 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 28 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 29 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 12.49 8.30 -92.70 -0.77 11.72 16 39 H 0.18 1.38 8.06 -2.91 -0.02 1.35 16 40 H 0.20 -0.75 8.06 -2.91 -0.02 -0.78 16 41 H 0.20 -0.66 8.06 -2.91 -0.02 -0.68 16 42 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.37 21.02 7.80 -92.71 -0.72 20.30 16 44 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -88.17 380.51 3.44 -84.73 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.45 Total: 29.78 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 7.37 Total: 20.42 kcal Atomic # 7 Polarization: -149.26 SS G_CDS: -6.19 Total: -155.46 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.07 Total: -28.96 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.76 Total: -2.52 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.03 Total: 52.00 kcal Total: -88.17 3.44 -84.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135855111.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.891 kcal (2) G-P(sol) polarization free energy of solvation -88.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds