Wall clock time and date at job start Tue Mar 31 2020 19:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46741 * 2 1 4 4 C 1.53001 * 109.47408 * 240.00174 * 2 1 3 5 5 C 1.52999 * 109.47306 * 174.48476 * 4 2 1 6 6 H 1.09002 * 109.46906 * 54.56349 * 5 4 2 7 7 C 1.52999 * 109.47119 * 294.56578 * 5 4 2 8 8 N 1.46498 * 109.47028 * 174.56215 * 5 4 2 9 9 C 1.36930 * 120.00026 * 202.71536 * 8 5 4 10 10 H 1.08003 * 119.99992 * 5.54000 * 9 8 5 11 11 C 1.38811 * 120.00367 * 185.53520 * 9 8 5 12 12 N 1.31618 * 120.00478 * 185.73406 * 11 9 8 13 13 Si 1.86803 * 119.99576 * 6.01129 * 11 9 8 14 14 H 1.48501 * 109.47139 * 265.64142 * 13 11 9 15 15 H 1.48498 * 109.47493 * 25.64432 * 13 11 9 16 16 H 1.48506 * 109.46872 * 145.64433 * 13 11 9 17 17 N 1.46498 * 109.47000 * 119.99811 * 2 1 3 18 18 C 1.34769 * 120.00510 * 276.35937 * 17 2 1 19 19 O 1.21640 * 119.99894 * 5.35624 * 18 17 2 20 20 C 1.47263 * 120.00499 * 185.35294 * 18 17 2 21 21 N 1.34846 * 126.04093 * 4.83440 * 20 18 17 22 22 C 1.32128 * 109.12700 * 179.82282 * 21 20 18 23 23 C 1.41280 * 131.86993 * 180.14918 * 22 21 20 24 24 C 1.35831 * 119.37515 * 180.31707 * 23 22 21 25 25 C 1.40646 * 119.77989 * 359.97438 * 24 23 22 26 26 C 1.34776 * 120.35474 * 359.97438 * 25 24 23 27 27 N 1.36851 * 120.63417 * 0.02562 * 26 25 24 28 28 C 1.36253 * 132.20112 * 180.02562 * 27 26 25 29 29 F 1.35103 * 126.55866 * 359.96728 * 28 27 26 30 30 H 1.09004 * 109.46908 * 60.00075 * 1 2 3 31 31 H 1.08999 * 109.46741 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47260 * 299.99929 * 1 2 3 33 33 H 1.08997 * 109.46929 * 54.48402 * 4 2 1 34 34 H 1.08996 * 109.47102 * 294.48845 * 4 2 1 35 35 H 1.09002 * 109.47045 * 299.99686 * 7 5 4 36 36 H 1.09004 * 109.47068 * 59.99758 * 7 5 4 37 37 H 1.08995 * 109.47180 * 179.97438 * 7 5 4 38 38 H 0.97003 * 119.99734 * 22.72294 * 8 5 4 39 39 H 0.97000 * 120.00274 * 180.28019 * 12 11 9 40 40 H 0.97003 * 119.99836 * 96.36471 * 17 2 1 41 41 H 1.07999 * 120.31519 * 0.29075 * 23 22 21 42 42 H 1.08001 * 120.11446 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.82063 * 180.02562 * 25 24 23 44 44 H 1.08006 * 119.68265 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5638 -0.6022 -1.3205 6 1 4.0006 -0.9681 -0.3912 7 6 3.9519 0.8636 -1.5240 8 7 4.0640 -1.4003 -2.4426 9 6 5.3624 -1.8351 -2.4484 10 1 5.9919 -1.6673 -1.5871 11 6 5.8695 -2.4917 -3.5613 12 7 7.0793 -3.0089 -3.5258 13 14 4.8378 -2.6345 -5.1121 14 1 4.1090 -3.9284 -5.1044 15 1 3.8614 -1.5167 -5.1618 16 1 5.7229 -2.5720 -6.3029 17 7 2.0183 -0.6906 1.1962 18 6 2.1211 -0.0253 2.3637 19 8 1.7178 1.1191 2.4491 20 6 2.7215 -0.6837 3.5361 21 7 3.2879 -1.9073 3.5554 22 6 3.7211 -2.1646 4.7768 23 6 4.3808 -3.2865 5.3266 24 6 4.7119 -3.2854 6.6439 25 6 4.3960 -2.1717 7.4426 26 6 3.7674 -1.1062 6.9077 27 7 3.4266 -1.0906 5.5824 28 6 2.8008 -0.1594 4.8092 29 9 2.3435 1.0461 5.2130 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.5984 -0.2676 -2.1364 34 1 1.7596 -1.7734 -1.2013 35 1 3.5151 1.2295 -2.4533 36 1 3.5797 1.4574 -0.6891 37 1 5.0374 0.9485 -1.5743 38 1 3.4753 -1.6205 -3.1815 39 1 7.4352 -3.4642 -4.3049 40 1 2.2678 -1.6267 1.1479 41 1 4.6193 -4.1372 4.7053 42 1 5.2160 -4.1369 7.0766 43 1 4.6593 -2.1699 8.4900 44 1 3.5304 -0.2566 7.5310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135855112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:02 Heat of formation + Delta-G solvation = 25.230588 kcal Electronic energy + Delta-G solvation = -28400.290115 eV Core-core repulsion = 24269.188818 eV Total energy + Delta-G solvation = -4131.101297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 7.91 seconds Orbital eigenvalues (eV) -49.28468 -43.15444 -39.74744 -37.72543 -36.90963 -34.70741 -34.17682 -32.21844 -31.30420 -30.35147 -29.05717 -28.93244 -26.33297 -25.22561 -23.61370 -23.21382 -23.10215 -21.24522 -20.43386 -19.72288 -18.94086 -17.92007 -17.55673 -17.34087 -17.23681 -16.20280 -16.03753 -15.67873 -15.22481 -14.99431 -14.91902 -14.53316 -14.24721 -14.14633 -13.85706 -13.60687 -13.17571 -12.81653 -12.57380 -12.52925 -12.38240 -12.15203 -12.08982 -11.89243 -11.67426 -11.46776 -11.24338 -10.95375 -10.79279 -10.59382 -10.48835 -10.15459 -10.09112 -9.94314 -9.52358 -9.36239 -8.91379 -8.85163 -8.25300 -7.20631 -5.71856 -3.06455 0.14921 0.62168 1.56305 1.68241 2.89668 3.12408 3.33176 3.41068 3.46308 3.49514 3.60314 3.87046 3.98226 4.24618 4.35183 4.56430 4.64500 4.75707 4.91279 5.01932 5.20950 5.23135 5.36854 5.47877 5.55249 5.63345 5.67971 5.71358 5.78410 5.86139 5.91477 5.96016 6.03897 6.18528 6.26623 6.32652 6.42529 6.48253 6.57578 6.66088 6.92970 7.08440 7.11941 7.62995 8.06967 8.22433 8.47620 9.27149 9.99457 10.20073 11.46710 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.003073 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.032150 B = 9110.285951 C =10756.053406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.093 0.907 4 C -0.136 4.136 5 C 0.176 3.824 6 H 0.056 0.944 7 C -0.167 4.167 8 N -0.748 5.748 9 C -0.238 4.238 10 H 0.089 0.911 11 C 0.003 3.997 12 N -0.935 5.935 13 Si 0.881 3.119 14 H -0.286 1.286 15 H -0.275 1.275 16 H -0.292 1.292 17 N -0.697 5.697 18 C 0.601 3.399 19 O -0.532 6.532 20 C 0.010 3.990 21 N -0.435 5.435 22 C 0.244 3.756 23 C -0.066 4.066 24 C -0.101 4.101 25 C -0.126 4.126 26 C 0.047 3.953 27 N -0.381 5.381 28 C 0.172 3.828 29 F -0.075 7.075 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.359 0.641 39 H 0.258 0.742 40 H 0.412 0.588 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 1.405 23.994 26.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.111 0.889 4 C -0.175 4.175 5 C 0.067 3.933 6 H 0.074 0.926 7 C -0.227 4.227 8 N -0.390 5.390 9 C -0.368 4.368 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.583 5.583 13 Si 0.711 3.289 14 H -0.213 1.213 15 H -0.201 1.201 16 H -0.219 1.219 17 N -0.348 5.348 18 C 0.385 3.615 19 O -0.408 6.408 20 C -0.125 4.125 21 N -0.156 5.156 22 C -0.001 4.001 23 C -0.086 4.086 24 C -0.125 4.125 25 C -0.146 4.146 26 C -0.073 4.073 27 N -0.059 5.059 28 C 0.038 3.962 29 F -0.054 7.054 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.192 0.808 39 H 0.068 0.932 40 H 0.248 0.752 41 H 0.181 0.819 42 H 0.167 0.833 43 H 0.174 0.826 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.540 1.797 23.374 25.703 hybrid contribution -0.509 0.253 -0.265 0.627 sum -11.049 2.050 23.109 25.696 Atomic orbital electron populations 1.22180 0.95354 1.02111 1.02428 1.21121 0.93688 0.97818 0.83377 0.88865 1.22217 0.97974 1.00978 0.96297 1.20194 0.90313 0.90535 0.92221 0.92595 1.22462 1.02100 0.98471 0.99690 1.42761 1.11193 1.63083 1.22008 1.19068 0.87112 1.29373 1.01207 0.89335 1.24687 0.96180 1.00579 0.97797 1.69715 1.16380 1.42192 1.29997 0.86563 0.79895 0.77743 0.84700 1.21278 1.20068 1.21914 1.45863 1.65296 1.15383 1.08259 1.16592 0.78322 0.85049 0.81520 1.90845 1.49098 1.17085 1.83765 1.20787 1.06524 0.93261 0.91961 1.71043 1.14509 1.13167 1.16850 1.20703 1.03890 0.89412 0.86098 1.20485 0.97000 0.95466 0.95613 1.21140 0.99402 0.98929 0.93012 1.20918 0.99453 0.92611 1.01631 1.21751 1.01480 1.02033 0.82050 1.42786 1.38822 1.15062 1.09209 1.17428 1.06951 0.82284 0.89545 1.91670 1.85966 1.37192 1.90582 0.91555 0.92470 0.92107 0.90480 0.90968 0.93625 0.94101 0.92520 0.80850 0.93187 0.75164 0.81923 0.83305 0.82598 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.46 37.16 0.35 -1.59 16 2 C 0.14 2.01 2.39 -67.93 -0.16 1.85 16 3 H 0.09 1.41 5.90 -51.93 -0.31 1.11 16 4 C -0.14 -2.05 4.38 -26.73 -0.12 -2.17 16 5 C 0.18 3.41 2.91 -67.93 -0.20 3.21 16 6 H 0.06 1.15 7.58 -51.93 -0.39 0.76 16 7 C -0.17 -3.13 9.23 37.16 0.34 -2.78 16 8 N -0.75 -17.68 4.91 -53.43 -0.26 -17.94 16 9 C -0.24 -6.75 10.38 -15.06 -0.16 -6.91 16 10 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 11 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 12 N -0.93 -29.60 13.97 55.49 0.78 -28.82 16 13 Si 0.88 22.22 27.67 -169.99 -4.70 17.51 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 15 H -0.27 -6.56 6.66 56.52 0.38 -6.18 16 16 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 17 N -0.70 -10.08 4.47 -54.93 -0.25 -10.33 16 18 C 0.60 9.57 7.74 -12.60 -0.10 9.47 16 19 O -0.53 -9.60 16.01 5.24 0.08 -9.51 16 20 C 0.01 0.15 6.98 -83.00 -0.58 -0.42 16 21 N -0.44 -6.20 11.04 -9.04 -0.10 -6.30 16 22 C 0.24 2.86 7.79 -155.93 -1.21 1.65 16 23 C -0.07 -0.53 10.11 -39.29 -0.40 -0.93 16 24 C -0.10 -0.52 10.06 -39.54 -0.40 -0.92 16 25 C -0.13 -0.58 9.98 -39.90 -0.40 -0.98 16 26 C 0.05 0.32 10.93 -16.54 -0.18 0.14 16 27 N -0.38 -4.18 2.94 -62.42 -0.18 -4.37 16 28 C 0.17 2.33 8.84 -15.71 -0.14 2.19 16 29 F -0.08 -1.03 16.84 2.25 0.04 -0.99 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.68 6.47 -51.93 -0.34 0.35 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.36 8.28 5.81 -40.82 -0.24 8.05 16 39 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 40 H 0.41 5.79 8.31 -40.82 -0.34 5.45 16 41 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 43 H 0.16 0.20 8.06 -52.49 -0.42 -0.22 16 44 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -35.72 374.88 -8.22 -43.94 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.84 Total: 9.37 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -3.44 Total: 1.80 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.02 Total: -67.76 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -0.99 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.70 Total: 17.51 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.72 -8.22 -43.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135855112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.171 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.91 seconds