Wall clock time and date at job start Tue Mar 31 2020 19:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46741 * 2 1 4 4 C 1.53001 * 109.47408 * 240.00174 * 2 1 3 5 5 C 1.52999 * 109.47306 * 174.48476 * 4 2 1 6 6 H 1.09002 * 109.46906 * 54.56349 * 5 4 2 7 7 C 1.52999 * 109.47119 * 294.56578 * 5 4 2 8 8 N 1.46498 * 109.47028 * 174.56215 * 5 4 2 9 9 C 1.36930 * 120.00026 * 202.71536 * 8 5 4 10 10 H 1.08003 * 119.99992 * 5.54000 * 9 8 5 11 11 C 1.38811 * 120.00367 * 185.53520 * 9 8 5 12 12 N 1.31618 * 120.00478 * 185.73406 * 11 9 8 13 13 Si 1.86803 * 119.99576 * 6.01129 * 11 9 8 14 14 H 1.48501 * 109.47139 * 265.64142 * 13 11 9 15 15 H 1.48498 * 109.47493 * 25.64432 * 13 11 9 16 16 H 1.48506 * 109.46872 * 145.64433 * 13 11 9 17 17 N 1.46498 * 109.47000 * 119.99811 * 2 1 3 18 18 C 1.34769 * 120.00510 * 276.35937 * 17 2 1 19 19 O 1.21640 * 119.99894 * 5.35624 * 18 17 2 20 20 C 1.47263 * 120.00499 * 185.35294 * 18 17 2 21 21 N 1.34846 * 126.04093 * 4.83440 * 20 18 17 22 22 C 1.32128 * 109.12700 * 179.82282 * 21 20 18 23 23 C 1.41280 * 131.86993 * 180.14918 * 22 21 20 24 24 C 1.35831 * 119.37515 * 180.31707 * 23 22 21 25 25 C 1.40646 * 119.77989 * 359.97438 * 24 23 22 26 26 C 1.34776 * 120.35474 * 359.97438 * 25 24 23 27 27 N 1.36851 * 120.63417 * 0.02562 * 26 25 24 28 28 C 1.36253 * 132.20112 * 180.02562 * 27 26 25 29 29 F 1.35103 * 126.55866 * 359.96728 * 28 27 26 30 30 H 1.09004 * 109.46908 * 60.00075 * 1 2 3 31 31 H 1.08999 * 109.46741 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47260 * 299.99929 * 1 2 3 33 33 H 1.08997 * 109.46929 * 54.48402 * 4 2 1 34 34 H 1.08996 * 109.47102 * 294.48845 * 4 2 1 35 35 H 1.09002 * 109.47045 * 299.99686 * 7 5 4 36 36 H 1.09004 * 109.47068 * 59.99758 * 7 5 4 37 37 H 1.08995 * 109.47180 * 179.97438 * 7 5 4 38 38 H 0.97003 * 119.99734 * 22.72294 * 8 5 4 39 39 H 0.97000 * 120.00274 * 180.28019 * 12 11 9 40 40 H 0.97003 * 119.99836 * 96.36471 * 17 2 1 41 41 H 1.07999 * 120.31519 * 0.29075 * 23 22 21 42 42 H 1.08001 * 120.11446 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.82063 * 180.02562 * 25 24 23 44 44 H 1.08006 * 119.68265 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5638 -0.6022 -1.3205 6 1 4.0006 -0.9681 -0.3912 7 6 3.9519 0.8636 -1.5240 8 7 4.0640 -1.4003 -2.4426 9 6 5.3624 -1.8351 -2.4484 10 1 5.9919 -1.6673 -1.5871 11 6 5.8695 -2.4917 -3.5613 12 7 7.0793 -3.0089 -3.5258 13 14 4.8378 -2.6345 -5.1121 14 1 4.1090 -3.9284 -5.1044 15 1 3.8614 -1.5167 -5.1618 16 1 5.7229 -2.5720 -6.3029 17 7 2.0183 -0.6906 1.1962 18 6 2.1211 -0.0253 2.3637 19 8 1.7178 1.1191 2.4491 20 6 2.7215 -0.6837 3.5361 21 7 3.2879 -1.9073 3.5554 22 6 3.7211 -2.1646 4.7768 23 6 4.3808 -3.2865 5.3266 24 6 4.7119 -3.2854 6.6439 25 6 4.3960 -2.1717 7.4426 26 6 3.7674 -1.1062 6.9077 27 7 3.4266 -1.0906 5.5824 28 6 2.8008 -0.1594 4.8092 29 9 2.3435 1.0461 5.2130 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.5984 -0.2676 -2.1364 34 1 1.7596 -1.7734 -1.2013 35 1 3.5151 1.2295 -2.4533 36 1 3.5797 1.4574 -0.6891 37 1 5.0374 0.9485 -1.5743 38 1 3.4753 -1.6205 -3.1815 39 1 7.4352 -3.4642 -4.3049 40 1 2.2678 -1.6267 1.1479 41 1 4.6193 -4.1372 4.7053 42 1 5.2160 -4.1369 7.0766 43 1 4.6593 -2.1699 8.4900 44 1 3.5304 -0.2566 7.5310 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135855112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:48 Heat of formation + Delta-G solvation = 0.984152 kcal Electronic energy + Delta-G solvation = -28401.341519 eV Core-core repulsion = 24269.188818 eV Total energy + Delta-G solvation = -4132.152701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.155 amu Computer time = 34.34 seconds Orbital eigenvalues (eV) -50.28381 -43.97028 -40.93256 -38.64800 -38.15649 -36.29636 -34.91530 -34.07214 -32.58473 -31.35743 -30.63911 -29.78071 -27.66482 -26.15504 -25.43350 -24.00320 -23.94839 -22.52331 -21.69735 -21.21832 -19.79947 -19.65387 -18.63021 -18.37082 -18.15571 -17.16301 -17.01054 -16.68206 -16.27392 -16.19205 -15.91874 -15.90125 -15.71668 -15.30532 -15.13110 -14.82225 -14.68342 -14.37617 -13.94582 -13.47860 -13.40356 -13.30812 -12.98343 -12.96225 -12.89072 -12.87611 -12.71098 -12.19862 -12.15825 -12.10831 -11.82068 -11.72974 -11.61182 -11.50697 -11.30657 -10.93902 -10.27722 -9.99375 -9.29571 -9.03100 -7.99346 -5.32369 -0.54405 -0.11421 0.75697 0.79190 1.40848 1.44625 1.52921 2.02020 2.09732 2.40365 2.52145 2.78880 3.07639 3.23049 3.32176 3.43580 3.49416 3.81026 3.91059 3.97593 4.11066 4.13405 4.21077 4.43518 4.52922 4.56208 4.60465 4.63958 4.79837 4.91062 4.94201 5.00846 5.01972 5.04480 5.09109 5.17439 5.32133 5.38297 5.40719 5.43361 5.57329 5.71805 5.81227 6.18597 6.24850 6.47880 7.03380 7.12039 7.87246 8.09047 9.22664 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012332 B = 0.003073 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.032150 B = 9110.285951 C =10756.053406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.146 3.854 3 H 0.081 0.919 4 C -0.121 4.121 5 C 0.172 3.828 6 H 0.035 0.965 7 C -0.159 4.159 8 N -0.747 5.747 9 C -0.227 4.227 10 H 0.048 0.952 11 C -0.066 4.066 12 N -0.986 5.986 13 Si 0.956 3.044 14 H -0.276 1.276 15 H -0.248 1.248 16 H -0.300 1.300 17 N -0.693 5.693 18 C 0.598 3.402 19 O -0.562 6.562 20 C -0.015 4.015 21 N -0.474 5.474 22 C 0.239 3.761 23 C -0.099 4.099 24 C -0.069 4.069 25 C -0.104 4.104 26 C 0.021 3.979 27 N -0.378 5.378 28 C 0.151 3.849 29 F -0.082 7.082 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.025 0.975 38 H 0.367 0.633 39 H 0.257 0.743 40 H 0.413 0.587 41 H 0.172 0.828 42 H 0.191 0.809 43 H 0.204 0.796 44 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.924 0.575 25.415 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 H 0.099 0.901 4 C -0.160 4.160 5 C 0.064 3.936 6 H 0.053 0.947 7 C -0.218 4.218 8 N -0.391 5.391 9 C -0.358 4.358 10 H 0.066 0.934 11 C -0.257 4.257 12 N -0.637 5.637 13 Si 0.783 3.217 14 H -0.202 1.202 15 H -0.172 1.172 16 H -0.227 1.227 17 N -0.343 5.343 18 C 0.384 3.616 19 O -0.441 6.441 20 C -0.150 4.150 21 N -0.195 5.195 22 C -0.007 4.007 23 C -0.119 4.119 24 C -0.092 4.092 25 C -0.124 4.124 26 C -0.098 4.098 27 N -0.055 5.055 28 C 0.016 3.984 29 F -0.061 7.061 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.200 0.800 39 H 0.066 0.934 40 H 0.249 0.751 41 H 0.189 0.811 42 H 0.208 0.792 43 H 0.221 0.779 44 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.001 0.984 24.827 27.593 hybrid contribution 0.088 0.420 -0.393 0.582 sum -11.913 1.403 24.434 27.220 Atomic orbital electron populations 1.22102 0.93249 1.02977 1.02856 1.21132 0.95225 0.96828 0.82585 0.90059 1.22078 0.94260 1.01966 0.97671 1.20354 0.93289 0.90094 0.89876 0.94676 1.22336 1.00128 0.98238 1.01144 1.42704 1.09453 1.63544 1.23373 1.18962 0.88633 1.28434 0.99736 0.93417 1.25541 0.97709 1.00845 1.01603 1.69909 1.18862 1.43874 1.31010 0.85367 0.78360 0.78840 0.79134 1.20229 1.17222 1.22713 1.45892 1.64871 1.15343 1.08212 1.16804 0.77938 0.84766 0.82134 1.90802 1.50631 1.18231 1.84397 1.20676 1.07918 0.94161 0.92278 1.70955 1.16510 1.13283 1.18797 1.21341 1.03238 0.90363 0.85709 1.20817 0.98729 0.94991 0.97370 1.21748 0.96129 0.99832 0.91513 1.21582 0.96421 0.90841 1.03520 1.22524 1.02417 1.04203 0.80648 1.42888 1.38170 1.13986 1.10462 1.17370 1.08416 0.82704 0.89917 1.91630 1.86248 1.37641 1.90623 0.89513 0.91376 0.93257 0.88341 0.90171 0.92292 0.92319 0.95568 0.79974 0.93446 0.75052 0.81076 0.79170 0.77942 0.79317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.46 71.98 0.68 -2.76 16 2 C 0.15 3.99 2.39 44.99 0.11 4.10 16 3 H 0.08 2.44 5.90 -2.39 -0.01 2.43 16 4 C -0.12 -3.46 4.38 30.59 0.13 -3.33 16 5 C 0.17 6.63 2.91 44.99 0.13 6.76 16 6 H 0.04 1.51 7.58 -2.39 -0.02 1.49 16 7 C -0.16 -5.93 9.23 71.98 0.66 -5.26 16 8 N -0.75 -35.01 4.91 -322.95 -1.59 -36.60 16 9 C -0.23 -13.20 10.38 84.03 0.87 -12.32 16 10 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 11 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 12 N -0.99 -64.29 13.97 21.65 0.30 -63.99 16 13 Si 0.96 45.74 27.67 68.60 1.90 47.63 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 15 H -0.25 -10.66 6.66 99.48 0.66 -10.00 16 16 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 17 N -0.69 -20.77 4.47 -445.95 -1.99 -22.77 16 18 C 0.60 20.23 7.74 86.62 0.67 20.90 16 19 O -0.56 -21.37 16.01 -4.16 -0.07 -21.43 16 20 C -0.02 -0.49 6.98 40.98 0.29 -0.20 16 21 N -0.47 -14.43 11.04 -182.50 -2.01 -16.45 16 22 C 0.24 5.71 7.79 134.20 1.05 6.76 16 23 C -0.10 -1.46 10.11 22.46 0.23 -1.23 16 24 C -0.07 -0.43 10.06 22.30 0.22 -0.21 16 25 C -0.10 -0.51 9.98 22.06 0.22 -0.29 16 26 C 0.02 0.25 10.93 83.11 0.91 1.15 16 27 N -0.38 -8.34 2.94 -351.39 -1.03 -9.37 16 28 C 0.15 4.33 8.84 83.93 0.74 5.07 16 29 F -0.08 -2.39 16.84 44.97 0.76 -1.63 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.24 7.93 -2.39 -0.02 1.22 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.97 6.47 -2.38 -0.02 1.95 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.37 16.10 5.81 -92.71 -0.54 15.56 16 39 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 40 H 0.41 12.16 8.31 -92.71 -0.77 11.39 16 41 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.19 -0.29 8.06 -2.91 -0.02 -0.32 16 43 H 0.20 -0.81 8.06 -2.91 -0.02 -0.84 16 44 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -83.25 374.88 3.34 -79.91 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.30 Total: 29.04 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 7.38 Total: 15.66 kcal Atomic # 7 Polarization: -142.85 SS G_CDS: -6.33 Total: -149.17 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.07 Total: -21.43 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.76 Total: -1.63 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.63 kcal Total: -83.25 3.34 -79.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135855112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.893 kcal (2) G-P(sol) polarization free energy of solvation -83.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 34.34 seconds