Wall clock time and date at job start Tue Mar 31 2020 23:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99695 * 2 1 4 4 H 1.48501 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47544 * 300.00074 * 3 2 1 6 6 H 1.48502 * 109.47111 * 60.00345 * 3 2 1 7 7 C 1.37882 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47125 * 185.00985 * 9 7 2 11 11 C 1.46952 * 111.00087 * 295.18223 * 10 9 7 12 12 C 1.53055 * 109.36536 * 183.18790 * 11 10 9 13 13 N 1.46959 * 109.36103 * 301.59730 * 12 11 10 14 14 C 1.46901 * 110.99916 * 183.18529 * 13 12 11 15 15 C 1.50697 * 109.47370 * 169.99616 * 14 13 12 16 16 C 1.38266 * 119.93871 * 90.00278 * 15 14 13 17 17 C 1.38151 * 120.05373 * 180.02562 * 16 15 14 18 18 C 1.38727 * 119.94409 * 0.25151 * 17 16 15 19 19 O 1.35896 * 120.05598 * 179.74337 * 18 17 16 20 20 C 1.42905 * 117.00124 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47305 * 180.02562 * 20 19 18 22 22 O 1.20828 * 119.99816 * 0.02562 * 21 20 19 23 23 O 1.34224 * 119.99987 * 179.97438 * 21 20 19 24 24 C 1.38741 * 119.88720 * 359.47378 * 18 17 16 25 25 C 1.38146 * 119.94045 * 0.54853 * 24 18 17 26 26 C 1.46952 * 110.88051 * 59.32165 * 13 12 11 27 27 C 1.46959 * 110.99625 * 58.97983 * 10 9 7 28 28 H 0.96995 * 120.00151 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46982 * 65.00838 * 9 7 2 30 30 H 1.08998 * 109.47083 * 305.01155 * 9 7 2 31 31 H 1.08999 * 109.49120 * 63.21828 * 11 10 9 32 32 H 1.09005 * 109.48971 * 303.15249 * 11 10 9 33 33 H 1.08996 * 109.49148 * 181.63081 * 12 11 10 34 34 H 1.08994 * 109.48584 * 61.55994 * 12 11 10 35 35 H 1.09000 * 109.47007 * 49.99689 * 14 13 12 36 36 H 1.09002 * 109.47047 * 290.00673 * 14 13 12 37 37 H 1.08004 * 119.97591 * 359.97438 * 16 15 14 38 38 H 1.07999 * 120.02786 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.46961 * 300.00931 * 20 19 18 40 40 H 1.09000 * 109.47038 * 60.00513 * 20 19 18 41 41 H 0.96696 * 117.00136 * 179.97438 * 23 21 20 42 42 H 1.08000 * 120.02789 * 180.24660 * 24 18 17 43 43 H 1.08004 * 119.96901 * 179.72542 * 25 24 18 44 44 H 1.08994 * 109.49444 * 60.64195 * 26 13 12 45 45 H 1.09005 * 109.48971 * 180.71119 * 26 13 12 46 46 H 1.09007 * 109.48935 * 296.77559 * 27 10 9 47 47 H 1.09004 * 109.49152 * 56.84537 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2012 -3.6131 0.1198 11 6 3.0783 -3.6866 -1.0570 12 6 3.9971 -4.9041 -0.9298 13 7 4.7859 -4.7923 0.3051 14 6 5.7360 -5.9063 0.4255 15 6 6.6880 -5.6340 1.5615 16 6 6.3787 -6.0631 2.8390 17 6 7.2495 -5.8143 3.8823 18 6 8.4326 -5.1287 3.6482 19 8 9.2883 -4.8782 4.6737 20 6 10.4878 -4.1679 4.3591 21 6 11.3062 -3.9846 5.6111 22 8 10.9039 -4.4182 6.6647 23 8 12.4826 -3.3405 5.5556 24 6 8.7432 -4.7042 2.3644 25 6 7.8689 -4.9551 1.3247 26 6 3.9088 -4.7188 1.4819 27 6 2.9900 -3.5013 1.3548 28 1 -0.4850 0.8400 -0.0004 29 1 0.6931 -2.5965 -0.9318 30 1 0.5592 -2.5192 0.8414 31 1 3.6814 -2.7807 -1.1183 32 1 2.4715 -3.7815 -1.9575 33 1 4.6684 -4.9443 -1.7876 34 1 3.3951 -5.8120 -0.8959 35 1 6.2977 -6.0066 -0.5031 36 1 5.1906 -6.8294 0.6217 37 1 5.4552 -6.5926 3.0216 38 1 7.0073 -6.1493 4.8800 39 1 11.0644 -4.7345 3.6280 40 1 10.2341 -3.1922 3.9444 41 1 12.9715 -3.2472 6.3846 42 1 9.6655 -4.1737 2.1790 43 1 8.1082 -4.6209 0.3260 44 1 3.3057 -5.6246 1.5432 45 1 4.5156 -4.6239 2.3824 46 1 3.5921 -2.5933 1.3208 47 1 2.3187 -3.4612 2.2126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138925795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:56 Heat of formation + Delta-G solvation = -82.462648 kcal Electronic energy + Delta-G solvation = -28199.204215 eV Core-core repulsion = 24154.600544 eV Total energy + Delta-G solvation = -4044.603672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 18.66 seconds Orbital eigenvalues (eV) -41.01596 -40.16924 -38.91213 -37.65244 -36.58061 -35.06469 -32.50597 -31.46588 -31.03127 -30.19905 -29.50350 -27.71458 -25.61878 -23.82740 -23.52616 -22.90632 -22.05105 -21.45605 -20.89483 -19.07506 -19.01567 -18.01964 -17.37599 -17.12433 -16.39622 -15.86098 -15.80035 -15.56910 -15.35233 -14.71153 -14.61611 -14.35072 -14.14753 -13.99755 -13.69332 -13.67435 -13.30927 -13.08404 -12.84560 -12.79203 -12.10129 -11.94914 -11.84265 -11.74775 -11.63856 -11.32162 -11.19642 -11.04623 -10.88799 -10.80283 -10.62732 -10.47148 -10.30695 -10.02862 -9.79683 -9.50441 -9.12367 -8.41611 -8.36486 -8.01717 -7.14210 -6.00585 -4.09229 1.17274 1.25047 1.62377 1.82885 3.24736 3.27959 3.36120 3.40562 3.53166 4.32520 4.35052 4.42898 4.44769 4.56511 4.67518 4.69011 4.80719 5.07622 5.12352 5.21831 5.29937 5.34755 5.46446 5.48702 5.62305 5.66595 5.86033 5.90730 5.91740 5.94151 6.00376 6.06820 6.16578 6.19072 6.33253 6.52408 6.54053 6.64148 6.80221 6.90686 7.04778 7.23576 7.31973 7.32740 7.42271 7.55060 7.92506 8.08089 8.31425 8.32584 9.01838 9.57577 11.04478 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.002479 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.889046 B =11292.218676 C =12871.074966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.186 3.814 10 N -0.544 5.544 11 C 0.064 3.936 12 C 0.060 3.940 13 N -0.532 5.532 14 C 0.095 3.905 15 C -0.102 4.102 16 C -0.072 4.072 17 C -0.144 4.144 18 C 0.121 3.879 19 O -0.298 6.298 20 C 0.069 3.931 21 C 0.482 3.518 22 O -0.491 6.491 23 O -0.512 6.512 24 C -0.209 4.209 25 C -0.057 4.057 26 C 0.056 3.944 27 C 0.066 3.934 28 H 0.261 0.739 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.419 0.581 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.033 0.967 45 H 0.072 0.928 46 H 0.049 0.951 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.380 -12.350 5.349 26.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.061 3.939 10 N -0.268 5.268 11 C -0.065 4.065 12 C -0.068 4.068 13 N -0.257 5.257 14 C -0.032 4.032 15 C -0.102 4.102 16 C -0.090 4.090 17 C -0.162 4.162 18 C 0.076 3.924 19 O -0.212 6.212 20 C -0.007 4.007 21 C 0.323 3.677 22 O -0.377 6.377 23 O -0.325 6.325 24 C -0.227 4.227 25 C -0.076 4.076 26 C -0.072 4.072 27 C -0.063 4.063 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.279 0.721 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 21.845 -12.455 5.475 25.735 hybrid contribution 0.852 1.339 0.418 1.642 sum 22.697 -11.116 5.893 25.951 Atomic orbital electron populations 1.69952 1.06019 1.26664 1.50473 1.24969 0.94748 0.99155 0.95000 0.86598 0.80221 0.83977 0.77599 1.19791 1.21004 1.20991 1.21804 0.93467 0.91997 1.51207 0.92260 1.19738 0.90892 0.85595 0.97714 1.62693 1.16987 1.46256 1.00892 1.21927 0.94165 0.95987 0.94469 1.22228 0.94855 0.98486 0.91220 1.62167 1.18274 1.42042 1.03218 1.20973 0.93356 0.92515 0.96363 1.19735 0.95691 1.00074 0.94732 1.20923 0.98291 0.98255 0.91569 1.20369 0.92814 1.02599 1.00446 1.18909 0.90419 0.96941 0.86099 1.86053 1.29382 1.72065 1.33652 1.21784 0.85971 0.99991 0.93001 1.22673 0.79899 0.74777 0.90389 1.90794 1.69824 1.45275 1.31784 1.84431 1.32915 1.71405 1.43784 1.21199 1.02371 1.06850 0.92327 1.20805 0.92734 0.95269 0.98780 1.22316 0.93717 0.98503 0.92619 1.21908 0.94794 0.95823 0.93799 0.92922 0.95512 0.94803 0.93487 0.91426 0.91316 0.94742 0.90262 0.94210 0.85287 0.85070 0.87514 0.87355 0.72056 0.85502 0.85449 0.94914 0.90987 0.93286 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.55 -15.05 7.66 -34.44 -0.26 -15.32 16 8 H 0.06 1.65 5.82 -52.49 -0.31 1.34 16 9 C 0.19 4.82 5.14 -4.98 -0.03 4.79 16 10 N -0.54 -11.74 4.92 -235.90 -1.16 -12.90 16 11 C 0.06 1.23 5.32 -3.77 -0.02 1.21 16 12 C 0.06 0.92 5.61 -3.76 -0.02 0.90 16 13 N -0.53 -7.97 4.70 -235.91 -1.11 -9.08 16 14 C 0.10 1.12 5.11 -4.98 -0.03 1.09 16 15 C -0.10 -1.16 4.89 -104.61 -0.51 -1.67 16 16 C -0.07 -0.79 7.91 -39.60 -0.31 -1.10 16 17 C -0.14 -1.59 9.99 -39.43 -0.39 -1.99 16 18 C 0.12 1.32 6.69 -39.21 -0.26 1.06 16 19 O -0.30 -3.26 9.67 -39.37 -0.38 -3.64 16 20 C 0.07 0.49 5.33 36.01 0.19 0.68 16 21 C 0.48 3.92 8.40 36.01 0.30 4.23 16 22 O -0.49 -6.04 17.26 -25.48 -0.44 -6.48 16 23 O -0.51 -2.55 13.42 -39.24 -0.53 -3.07 16 24 C -0.21 -2.02 9.04 -39.43 -0.36 -2.38 16 25 C -0.06 -0.61 9.69 -39.61 -0.38 -0.99 16 26 C 0.06 0.90 5.25 -3.77 -0.02 0.88 16 27 C 0.07 1.31 5.24 -3.76 -0.02 1.29 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 1.01 6.78 -51.93 -0.35 0.66 16 32 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 33 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.82 7.97 -51.93 -0.41 0.41 16 36 H 0.04 0.44 8.06 -51.93 -0.42 0.03 16 37 H 0.13 1.26 7.99 -52.48 -0.42 0.84 16 38 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.11 0.49 7.65 -51.93 -0.40 0.09 16 40 H 0.11 0.59 7.67 -51.93 -0.40 0.19 16 41 H 0.42 0.39 9.10 45.56 0.41 0.80 16 42 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 43 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 1.08 5.95 -51.93 -0.31 0.77 16 46 H 0.05 1.10 6.61 -51.92 -0.34 0.76 16 47 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -34.22 382.05 -10.57 -44.79 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.21 Total: -0.73 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.22 Total: -5.61 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -1.53 Total: -47.61 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -1.35 Total: -13.19 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.22 -10.57 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138925795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.675 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.67 seconds