Wall clock time and date at job start Tue Mar 31 2020 23:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99695 * 2 1 4 4 H 1.48501 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47544 * 300.00074 * 3 2 1 6 6 H 1.48502 * 109.47111 * 60.00345 * 3 2 1 7 7 C 1.37882 * 120.00266 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99546 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47125 * 185.00985 * 9 7 2 11 11 C 1.46952 * 111.00087 * 295.18223 * 10 9 7 12 12 C 1.53055 * 109.36536 * 183.18790 * 11 10 9 13 13 N 1.46959 * 109.36103 * 301.59730 * 12 11 10 14 14 C 1.46901 * 110.99916 * 183.18529 * 13 12 11 15 15 C 1.50697 * 109.47370 * 169.99616 * 14 13 12 16 16 C 1.38266 * 119.93871 * 90.00278 * 15 14 13 17 17 C 1.38151 * 120.05373 * 180.02562 * 16 15 14 18 18 C 1.38727 * 119.94409 * 0.25151 * 17 16 15 19 19 O 1.35896 * 120.05598 * 179.74337 * 18 17 16 20 20 C 1.42905 * 117.00124 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.47305 * 180.02562 * 20 19 18 22 22 O 1.20828 * 119.99816 * 0.02562 * 21 20 19 23 23 O 1.34224 * 119.99987 * 179.97438 * 21 20 19 24 24 C 1.38741 * 119.88720 * 359.47378 * 18 17 16 25 25 C 1.38146 * 119.94045 * 0.54853 * 24 18 17 26 26 C 1.46952 * 110.88051 * 59.32165 * 13 12 11 27 27 C 1.46959 * 110.99625 * 58.97983 * 10 9 7 28 28 H 0.96995 * 120.00151 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.46982 * 65.00838 * 9 7 2 30 30 H 1.08998 * 109.47083 * 305.01155 * 9 7 2 31 31 H 1.08999 * 109.49120 * 63.21828 * 11 10 9 32 32 H 1.09005 * 109.48971 * 303.15249 * 11 10 9 33 33 H 1.08996 * 109.49148 * 181.63081 * 12 11 10 34 34 H 1.08994 * 109.48584 * 61.55994 * 12 11 10 35 35 H 1.09000 * 109.47007 * 49.99689 * 14 13 12 36 36 H 1.09002 * 109.47047 * 290.00673 * 14 13 12 37 37 H 1.08004 * 119.97591 * 359.97438 * 16 15 14 38 38 H 1.07999 * 120.02786 * 179.97438 * 17 16 15 39 39 H 1.09000 * 109.46961 * 300.00931 * 20 19 18 40 40 H 1.09000 * 109.47038 * 60.00513 * 20 19 18 41 41 H 0.96696 * 117.00136 * 179.97438 * 23 21 20 42 42 H 1.08000 * 120.02789 * 180.24660 * 24 18 17 43 43 H 1.08004 * 119.96901 * 179.72542 * 25 24 18 44 44 H 1.08994 * 109.49444 * 60.64195 * 26 13 12 45 45 H 1.09005 * 109.48971 * 180.71119 * 26 13 12 46 46 H 1.09007 * 109.48935 * 296.77559 * 27 10 9 47 47 H 1.09004 * 109.49152 * 56.84537 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2012 -3.6131 0.1198 11 6 3.0783 -3.6866 -1.0570 12 6 3.9971 -4.9041 -0.9298 13 7 4.7859 -4.7923 0.3051 14 6 5.7360 -5.9063 0.4255 15 6 6.6880 -5.6340 1.5615 16 6 6.3787 -6.0631 2.8390 17 6 7.2495 -5.8143 3.8823 18 6 8.4326 -5.1287 3.6482 19 8 9.2883 -4.8782 4.6737 20 6 10.4878 -4.1679 4.3591 21 6 11.3062 -3.9846 5.6111 22 8 10.9039 -4.4182 6.6647 23 8 12.4826 -3.3405 5.5556 24 6 8.7432 -4.7042 2.3644 25 6 7.8689 -4.9551 1.3247 26 6 3.9088 -4.7188 1.4819 27 6 2.9900 -3.5013 1.3548 28 1 -0.4850 0.8400 -0.0004 29 1 0.6931 -2.5965 -0.9318 30 1 0.5592 -2.5192 0.8414 31 1 3.6814 -2.7807 -1.1183 32 1 2.4715 -3.7815 -1.9575 33 1 4.6684 -4.9443 -1.7876 34 1 3.3951 -5.8120 -0.8959 35 1 6.2977 -6.0066 -0.5031 36 1 5.1906 -6.8294 0.6217 37 1 5.4552 -6.5926 3.0216 38 1 7.0073 -6.1493 4.8800 39 1 11.0644 -4.7345 3.6280 40 1 10.2341 -3.1922 3.9444 41 1 12.9715 -3.2472 6.3846 42 1 9.6655 -4.1737 2.1790 43 1 8.1082 -4.6209 0.3260 44 1 3.3057 -5.6246 1.5432 45 1 4.5156 -4.6239 2.3824 46 1 3.5921 -2.5933 1.3208 47 1 2.3187 -3.4612 2.2126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138925795.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:43 Heat of formation + Delta-G solvation = -107.231600 kcal Electronic energy + Delta-G solvation = -28200.278278 eV Core-core repulsion = 24154.600544 eV Total energy + Delta-G solvation = -4045.677734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -41.67709 -40.91473 -40.12628 -38.62095 -37.18791 -36.52127 -34.48314 -32.34087 -32.05035 -31.53388 -30.29282 -29.21037 -27.19532 -25.21741 -24.52226 -24.00785 -23.34263 -22.59075 -21.72836 -20.61935 -19.67682 -18.65858 -18.45763 -18.01549 -17.72148 -17.21166 -16.62839 -16.51827 -16.41882 -16.02616 -15.83342 -15.68096 -15.47722 -15.06554 -14.93316 -14.75980 -14.47505 -14.29200 -13.79814 -13.59635 -13.50948 -13.38638 -13.02269 -12.91787 -12.75182 -12.68754 -12.53084 -12.20799 -12.15864 -12.10136 -11.99653 -11.88383 -11.75866 -11.59576 -11.54375 -11.29208 -10.61269 -9.89628 -9.30147 -9.08143 -8.95823 -8.15353 -6.34678 0.40144 0.46049 1.02661 1.29577 1.35343 1.36710 1.48907 2.37289 2.65220 2.69693 3.09105 3.24813 3.40995 3.79874 3.91064 3.94493 4.00989 4.05721 4.10337 4.15032 4.29646 4.31286 4.45171 4.47493 4.53950 4.56841 4.64397 4.75969 4.79841 4.84580 4.92298 5.10618 5.13470 5.16104 5.26014 5.27104 5.30330 5.33951 5.39804 5.48371 5.72616 5.74114 5.79357 6.03852 6.14359 6.15539 6.31959 6.35144 6.54687 6.86216 6.86420 7.36578 8.87145 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.002479 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.889046 B =11292.218676 C =12871.074966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.551 4.551 8 H 0.055 0.945 9 C 0.199 3.801 10 N -0.543 5.543 11 C 0.063 3.937 12 C 0.071 3.929 13 N -0.544 5.544 14 C 0.100 3.900 15 C -0.116 4.116 16 C -0.077 4.077 17 C -0.162 4.162 18 C 0.114 3.886 19 O -0.322 6.322 20 C 0.060 3.940 21 C 0.490 3.510 22 O -0.543 6.543 23 O -0.500 6.500 24 C -0.206 4.206 25 C -0.064 4.064 26 C 0.072 3.928 27 C 0.068 3.932 28 H 0.265 0.735 29 H 0.005 0.995 30 H 0.005 0.995 31 H 0.021 0.979 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.042 0.958 35 H 0.098 0.902 36 H 0.049 0.951 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.437 0.563 42 H 0.157 0.843 43 H 0.141 0.859 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.021 0.979 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.134 -12.507 4.525 28.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.590 4.590 8 H 0.073 0.927 9 C 0.072 3.928 10 N -0.266 5.266 11 C -0.066 4.066 12 C -0.057 4.057 13 N -0.269 5.269 14 C -0.026 4.026 15 C -0.117 4.117 16 C -0.095 4.095 17 C -0.180 4.180 18 C 0.069 3.931 19 O -0.236 6.236 20 C -0.015 4.015 21 C 0.333 3.667 22 O -0.432 6.432 23 O -0.315 6.315 24 C -0.224 4.224 25 C -0.082 4.082 26 C -0.057 4.057 27 C -0.061 4.061 28 H 0.074 0.926 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.040 0.960 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.154 0.846 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.300 0.700 42 H 0.174 0.826 43 H 0.159 0.841 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.039 0.961 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.648 -12.618 4.644 28.077 hybrid contribution 0.083 1.390 0.697 1.557 sum 24.731 -11.228 5.340 27.681 Atomic orbital electron populations 1.70068 1.07541 1.27783 1.51323 1.25822 0.95619 1.02857 0.94604 0.85514 0.78911 0.79438 0.77869 1.19278 1.20166 1.20418 1.21970 0.93263 0.92896 1.50860 0.92727 1.19403 0.91286 0.86916 0.95198 1.62631 1.17564 1.43845 1.02611 1.21986 0.94090 0.97157 0.93325 1.22116 0.94747 0.96189 0.92622 1.62122 1.18182 1.44289 1.02354 1.21010 0.92664 0.91412 0.97530 1.19804 0.96225 1.00987 0.94657 1.21027 0.98583 0.98367 0.91559 1.20534 0.93496 1.03299 1.00687 1.19058 0.90413 0.96907 0.86695 1.86016 1.30646 1.72650 1.34331 1.22143 0.85063 1.01220 0.93099 1.22920 0.80192 0.73665 0.89965 1.90782 1.71166 1.47685 1.33616 1.84401 1.31768 1.70229 1.45075 1.21488 1.03267 1.06278 0.91399 1.21059 0.92571 0.94888 0.99701 1.22098 0.93331 0.96360 0.93869 1.21905 0.94688 0.96905 0.92627 0.92621 0.97734 0.97699 0.96030 0.91623 0.88420 0.93986 0.88347 0.93303 0.84609 0.85102 0.84503 0.85283 0.69991 0.82565 0.84085 0.94166 0.89805 0.96104 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 2 C 0.01 0.58 5.46 84.66 0.46 1.04 16 3 Si 0.96 44.66 29.54 68.60 2.03 46.68 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.55 -31.17 7.66 25.60 0.20 -30.97 16 8 H 0.05 3.10 5.82 -2.91 -0.02 3.08 16 9 C 0.20 10.72 5.14 85.56 0.44 11.16 16 10 N -0.54 -23.89 4.92 -900.25 -4.43 -28.32 16 11 C 0.06 2.43 5.32 86.31 0.46 2.89 16 12 C 0.07 2.01 5.61 86.31 0.48 2.50 16 13 N -0.54 -15.08 4.70 -900.29 -4.23 -19.31 16 14 C 0.10 2.04 5.11 85.56 0.44 2.47 16 15 C -0.12 -2.36 4.89 -19.85 -0.10 -2.46 16 16 C -0.08 -1.57 7.91 22.26 0.18 -1.39 16 17 C -0.16 -3.45 9.99 22.37 0.22 -3.23 16 18 C 0.11 2.31 6.69 22.51 0.15 2.46 16 19 O -0.32 -6.67 9.67 -73.30 -0.71 -7.38 16 20 C 0.06 0.72 5.33 71.24 0.38 1.10 16 21 C 0.49 7.28 8.40 71.24 0.60 7.88 16 22 O -0.54 -13.30 17.26 28.39 0.49 -12.81 16 23 O -0.50 -3.86 13.42 -51.36 -0.69 -4.55 16 24 C -0.21 -3.40 9.04 22.37 0.20 -3.20 16 25 C -0.06 -1.16 9.69 22.25 0.22 -0.95 16 26 C 0.07 2.20 5.25 86.31 0.45 2.65 16 27 C 0.07 2.74 5.24 86.31 0.45 3.19 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.00 0.26 8.12 -2.39 -0.02 0.24 16 30 H 0.00 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.02 0.93 6.78 -2.39 -0.02 0.92 16 32 H 0.07 2.50 8.12 -2.38 -0.02 2.48 16 33 H 0.10 2.25 8.07 -2.39 -0.02 2.23 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.64 7.97 -2.39 -0.02 1.62 16 36 H 0.05 0.93 8.06 -2.39 -0.02 0.91 16 37 H 0.14 2.46 7.99 -2.91 -0.02 2.44 16 38 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.14 0.78 7.65 -2.39 -0.02 0.76 16 40 H 0.13 1.00 7.67 -2.39 -0.02 0.98 16 41 H 0.44 -0.03 9.10 -74.06 -0.67 -0.71 16 42 H 0.16 1.52 6.30 -2.91 -0.02 1.50 16 43 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.08 2.39 5.95 -2.38 -0.01 2.38 16 46 H 0.02 0.95 6.61 -2.38 -0.02 0.94 16 47 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -76.06 382.05 -1.71 -77.77 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.31 Total: 8.41 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 5.23 Total: -4.86 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -8.37 Total: -103.26 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.91 Total: -24.74 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.06 -1.71 -77.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138925795.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.466 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds