Wall clock time and date at job start Tue Mar 31 2020 21:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99809 * 2 1 4 4 H 1.48499 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46973 * 299.99762 * 3 2 1 6 6 H 1.48504 * 109.47040 * 59.99814 * 3 2 1 7 7 C 1.38807 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00266 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99832 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46963 * 182.91259 * 10 9 7 12 12 C 1.52998 * 115.54717 * 298.60451 * 11 10 9 13 13 C 1.53001 * 109.47461 * 270.46312 * 12 11 10 14 14 N 1.46499 * 109.47405 * 176.85293 * 13 12 11 15 15 C 1.34779 * 119.99853 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00024 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47432 * 183.87189 * 17 15 14 19 19 C 1.52994 * 115.56206 * 80.06855 * 18 17 15 20 20 F 1.39901 * 109.47046 * 274.32911 * 19 18 17 21 21 F 1.39892 * 109.47353 * 34.33462 * 19 18 17 22 22 F 1.39905 * 109.47081 * 154.33107 * 19 18 17 23 23 C 1.53003 * 117.49421 * 294.38277 * 18 17 15 24 24 C 1.53001 * 117.49708 * 225.76179 * 18 17 15 25 25 C 1.53002 * 117.52035 * 84.30876 * 11 10 9 26 26 C 1.53000 * 60.00012 * 107.47834 * 25 11 10 27 27 H 0.97002 * 120.00464 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00124 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47259 * 62.90930 * 10 9 7 30 30 H 1.09002 * 109.46754 * 302.90803 * 10 9 7 31 31 H 1.09006 * 109.47277 * 150.46657 * 12 11 10 32 32 H 1.08995 * 109.47508 * 30.46540 * 12 11 10 33 33 H 1.09006 * 109.46738 * 56.85182 * 13 12 11 34 34 H 1.09004 * 109.47298 * 296.85905 * 13 12 11 35 35 H 0.96996 * 120.00009 * 359.97438 * 14 13 12 36 36 H 1.08999 * 109.47246 * 63.86431 * 17 15 14 37 37 H 1.09001 * 109.46764 * 303.87095 * 17 15 14 38 38 H 1.09000 * 117.49759 * 145.02065 * 23 18 17 39 39 H 1.09005 * 117.49866 * 359.97438 * 23 18 17 40 40 H 1.09003 * 117.50125 * 359.97438 * 24 18 17 41 41 H 1.08996 * 117.49712 * 214.97543 * 24 18 17 42 42 H 1.09006 * 117.49381 * 214.96865 * 25 11 10 43 43 H 1.08998 * 117.50043 * 359.97438 * 25 11 10 44 44 H 1.08996 * 117.50430 * 252.50733 * 26 25 11 45 45 H 1.09000 * 117.49848 * 107.48910 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0655 -4.8187 -0.0728 12 6 0.0820 -4.9210 1.0948 13 6 0.6906 -5.7864 2.2000 14 7 -0.2185 -5.8229 3.3482 15 6 0.1121 -6.5292 4.4474 16 8 1.1625 -7.1343 4.4862 17 6 -0.8233 -6.5672 5.6283 18 6 -0.1726 -7.3515 6.7695 19 6 0.8528 -6.5784 7.6011 20 9 2.1060 -6.6540 6.9839 21 9 0.4605 -5.2392 7.6978 22 9 0.9296 -7.1355 8.8822 23 6 0.0790 -8.8442 6.5471 24 6 -1.0328 -8.3886 7.4944 25 6 0.5640 -5.2339 -1.4574 26 6 1.5525 -6.1252 -0.7028 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6450 -3.7374 0.9154 30 1 2.7233 -3.6922 -0.8623 31 1 -0.8470 -5.3742 0.7487 32 1 -0.1233 -3.9244 1.4853 33 1 1.6472 -5.3636 2.5073 34 1 0.8443 -6.7987 1.8259 35 1 -1.0581 -5.3381 3.3176 36 1 -1.7549 -7.0532 5.3384 37 1 -1.0320 -5.5499 5.9593 38 1 0.9750 -9.2755 6.9934 39 1 -0.2195 -9.2676 5.5880 40 1 -2.0625 -8.5118 7.1586 41 1 -0.8682 -8.5201 8.5638 42 1 -0.4666 -5.5799 -1.5364 43 1 0.9409 -4.6789 -2.3164 44 1 2.5799 -6.1568 -1.0654 45 1 1.1722 -7.0576 -0.2855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165450055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:28 Heat of formation + Delta-G solvation = -134.844473 kcal Electronic energy + Delta-G solvation = -29204.623219 eV Core-core repulsion = 24615.891361 eV Total energy + Delta-G solvation = -4588.731859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.19861 -47.79216 -47.57551 -40.06302 -38.45153 -37.63384 -34.79536 -33.92122 -31.00439 -30.75408 -29.08739 -26.81693 -25.95985 -23.52816 -22.99609 -22.73600 -21.87288 -21.17078 -20.35869 -18.64027 -18.50993 -18.36614 -17.76620 -17.12082 -16.87764 -15.96738 -15.70603 -15.21962 -15.04926 -14.61446 -14.48129 -14.42195 -14.25196 -14.12240 -13.92556 -13.80753 -13.76881 -13.67164 -13.44082 -13.09993 -12.66644 -12.50523 -12.29053 -12.04739 -11.89044 -11.78905 -11.46318 -11.09234 -11.08374 -10.95531 -10.84866 -10.83740 -10.56667 -10.12588 -9.92126 -9.84115 -9.66046 -9.32793 -9.02398 -8.84611 -6.89806 -5.76287 -3.03916 2.50693 2.58559 2.76908 3.24843 3.43846 3.49966 3.51852 3.58212 3.69631 4.03801 4.05958 4.12667 4.46581 4.52185 4.61740 4.80596 4.99303 5.02086 5.09147 5.10549 5.14319 5.16864 5.27554 5.29662 5.46471 5.52860 5.59711 5.61334 5.66756 5.74565 5.91626 6.15391 6.17767 6.21699 6.41670 6.44052 6.45400 6.56870 6.76983 6.84141 7.45296 7.71698 8.17039 8.43065 9.54792 10.12879 10.48588 11.46721 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.002664 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.344060 B =10506.089587 C =11937.987589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.728 5.728 10 C 0.188 3.812 11 C -0.119 4.119 12 C -0.093 4.093 13 C 0.126 3.874 14 N -0.727 5.727 15 C 0.505 3.495 16 O -0.526 6.526 17 C -0.106 4.106 18 C -0.187 4.187 19 C 0.488 3.512 20 F -0.165 7.165 21 F -0.180 7.180 22 F -0.185 7.185 23 C -0.121 4.121 24 C -0.150 4.150 25 C -0.164 4.164 26 C -0.178 4.178 27 H 0.254 0.746 28 H 0.384 0.616 29 H 0.021 0.979 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.401 0.599 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 -20.178 12.952 24.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.131 4.131 13 C 0.003 3.997 14 N -0.379 5.379 15 C 0.290 3.710 16 O -0.401 6.401 17 C -0.146 4.146 18 C -0.189 4.189 19 C 0.434 3.566 20 F -0.146 7.146 21 F -0.162 7.162 22 F -0.166 7.166 23 C -0.158 4.158 24 C -0.187 4.187 25 C -0.201 4.201 26 C -0.215 4.215 27 H 0.064 0.936 28 H 0.218 0.782 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.235 0.765 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.883 -20.471 12.990 24.732 hybrid contribution -0.089 1.552 0.025 1.555 sum -4.972 -18.919 13.015 23.496 Atomic orbital electron populations 1.69665 1.05062 1.25441 1.58107 1.24711 0.95525 0.97608 1.03167 0.86132 0.78847 0.84185 0.77153 1.20573 1.21915 1.21890 1.19284 0.91075 0.84168 1.42241 0.91211 1.42306 1.05887 0.99675 1.89348 1.20174 0.91796 0.84133 0.97847 1.21558 1.00591 0.96382 0.93425 1.21279 0.96925 1.01193 0.93674 1.21384 0.93421 1.00105 0.84826 1.46031 1.23937 1.51737 1.16151 1.20415 0.87437 0.79407 0.83732 1.90752 1.24302 1.43605 1.81483 1.21200 0.98830 1.02980 0.91591 1.22036 1.02270 0.93496 1.01073 1.19336 0.81844 0.77606 0.77808 1.93275 1.43024 1.95971 1.82312 1.93167 1.90809 1.36046 1.96163 1.93144 1.96566 1.85231 1.41708 1.22984 1.00268 0.90886 1.01639 1.23370 0.97361 0.98168 0.99763 1.22986 0.98645 1.02940 0.95561 1.22979 0.99707 0.94036 1.04811 0.93646 0.78171 0.96100 0.96071 0.91859 0.89360 0.91078 0.91717 0.76509 0.87003 0.87255 0.87583 0.87034 0.86930 0.87032 0.89358 0.88645 0.88947 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.96 13.06 55.49 0.72 -27.23 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.20 5.30 -59.91 -0.32 -18.51 16 10 C 0.19 3.81 6.09 -4.04 -0.02 3.78 16 11 C -0.12 -1.88 1.68 -154.51 -0.26 -2.14 16 12 C -0.09 -1.31 5.26 -26.73 -0.14 -1.45 16 13 C 0.13 1.68 5.42 -4.04 -0.02 1.66 16 14 N -0.73 -8.24 5.56 -60.29 -0.33 -8.57 16 15 C 0.51 6.03 7.74 -10.99 -0.08 5.95 16 16 O -0.53 -8.12 14.13 5.56 0.08 -8.04 16 17 C -0.11 -0.87 5.51 -27.88 -0.15 -1.03 16 18 C -0.19 -1.68 1.36 -154.51 -0.21 -1.89 16 19 C 0.49 5.63 3.18 37.15 0.12 5.75 16 20 F -0.16 -2.36 16.08 2.25 0.04 -2.33 16 21 F -0.18 -2.21 16.14 2.25 0.04 -2.17 16 22 F -0.19 -1.99 15.89 2.25 0.04 -1.95 16 23 C -0.12 -0.95 8.90 -26.73 -0.24 -1.19 16 24 C -0.15 -0.89 9.57 -26.73 -0.26 -1.15 16 25 C -0.16 -2.38 9.89 -26.73 -0.26 -2.65 16 26 C -0.18 -2.35 9.44 -26.73 -0.25 -2.60 16 27 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 28 H 0.38 9.99 7.01 -40.82 -0.29 9.70 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.06 0.78 7.88 -51.93 -0.41 0.37 16 32 H 0.09 1.47 7.22 -51.93 -0.37 1.10 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.84 7.18 -51.93 -0.37 0.47 16 35 H 0.40 3.58 8.47 -40.82 -0.35 3.24 16 36 H 0.11 0.57 7.95 -51.93 -0.41 0.16 16 37 H 0.11 0.85 7.19 -51.93 -0.37 0.47 16 38 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.11 0.43 8.08 -51.93 -0.42 0.01 16 41 H 0.11 0.63 7.22 -51.93 -0.37 0.26 16 42 H 0.09 1.15 8.03 -51.93 -0.42 0.73 16 43 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.04 7.39 -51.93 -0.38 0.66 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -33.09 383.29 -7.70 -40.79 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -6.67 Total: 8.97 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.03 Total: -4.24 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.07 Total: -54.32 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.08 Total: -8.04 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.11 Total: -6.45 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.09 -7.70 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165450055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.054 kcal (2) G-P(sol) polarization free energy of solvation -33.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds