Wall clock time and date at job start Tue Mar 31 2020 21:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99809 * 2 1 4 4 H 1.48499 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46973 * 299.99762 * 3 2 1 6 6 H 1.48504 * 109.47040 * 59.99814 * 3 2 1 7 7 C 1.38807 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00266 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99832 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46963 * 182.91259 * 10 9 7 12 12 C 1.52998 * 115.54717 * 298.60451 * 11 10 9 13 13 C 1.53001 * 109.47461 * 270.46312 * 12 11 10 14 14 N 1.46499 * 109.47405 * 176.85293 * 13 12 11 15 15 C 1.34779 * 119.99853 * 180.02562 * 14 13 12 16 16 O 1.21277 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00024 * 180.02562 * 15 14 13 18 18 C 1.52998 * 109.47432 * 183.87189 * 17 15 14 19 19 C 1.52994 * 115.56206 * 80.06855 * 18 17 15 20 20 F 1.39901 * 109.47046 * 274.32911 * 19 18 17 21 21 F 1.39892 * 109.47353 * 34.33462 * 19 18 17 22 22 F 1.39905 * 109.47081 * 154.33107 * 19 18 17 23 23 C 1.53003 * 117.49421 * 294.38277 * 18 17 15 24 24 C 1.53001 * 117.49708 * 225.76179 * 18 17 15 25 25 C 1.53002 * 117.52035 * 84.30876 * 11 10 9 26 26 C 1.53000 * 60.00012 * 107.47834 * 25 11 10 27 27 H 0.97002 * 120.00464 * 0.02562 * 1 2 3 28 28 H 0.96997 * 120.00124 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.47259 * 62.90930 * 10 9 7 30 30 H 1.09002 * 109.46754 * 302.90803 * 10 9 7 31 31 H 1.09006 * 109.47277 * 150.46657 * 12 11 10 32 32 H 1.08995 * 109.47508 * 30.46540 * 12 11 10 33 33 H 1.09006 * 109.46738 * 56.85182 * 13 12 11 34 34 H 1.09004 * 109.47298 * 296.85905 * 13 12 11 35 35 H 0.96996 * 120.00009 * 359.97438 * 14 13 12 36 36 H 1.08999 * 109.47246 * 63.86431 * 17 15 14 37 37 H 1.09001 * 109.46764 * 303.87095 * 17 15 14 38 38 H 1.09000 * 117.49759 * 145.02065 * 23 18 17 39 39 H 1.09005 * 117.49866 * 359.97438 * 23 18 17 40 40 H 1.09003 * 117.50125 * 359.97438 * 24 18 17 41 41 H 1.08996 * 117.49712 * 214.97543 * 24 18 17 42 42 H 1.09006 * 117.49381 * 214.96865 * 25 11 10 43 43 H 1.08998 * 117.50043 * 359.97438 * 25 11 10 44 44 H 1.08996 * 117.50430 * 252.50733 * 26 25 11 45 45 H 1.09000 * 117.49848 * 107.48910 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0655 -4.8187 -0.0728 12 6 0.0820 -4.9210 1.0948 13 6 0.6906 -5.7864 2.2000 14 7 -0.2185 -5.8229 3.3482 15 6 0.1121 -6.5292 4.4474 16 8 1.1625 -7.1343 4.4862 17 6 -0.8233 -6.5672 5.6283 18 6 -0.1726 -7.3515 6.7695 19 6 0.8528 -6.5784 7.6011 20 9 2.1060 -6.6540 6.9839 21 9 0.4605 -5.2392 7.6978 22 9 0.9296 -7.1355 8.8822 23 6 0.0790 -8.8442 6.5471 24 6 -1.0328 -8.3886 7.4944 25 6 0.5640 -5.2339 -1.4574 26 6 1.5525 -6.1252 -0.7028 27 1 -0.4851 0.8400 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6450 -3.7374 0.9154 30 1 2.7233 -3.6922 -0.8623 31 1 -0.8470 -5.3742 0.7487 32 1 -0.1233 -3.9244 1.4853 33 1 1.6472 -5.3636 2.5073 34 1 0.8443 -6.7987 1.8259 35 1 -1.0581 -5.3381 3.3176 36 1 -1.7549 -7.0532 5.3384 37 1 -1.0320 -5.5499 5.9593 38 1 0.9750 -9.2755 6.9934 39 1 -0.2195 -9.2676 5.5880 40 1 -2.0625 -8.5118 7.1586 41 1 -0.8682 -8.5201 8.5638 42 1 -0.4666 -5.5799 -1.5364 43 1 0.9409 -4.6789 -2.3164 44 1 2.5799 -6.1568 -1.0654 45 1 1.1722 -7.0576 -0.2855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165450055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:27 Heat of formation + Delta-G solvation = -155.533442 kcal Electronic energy + Delta-G solvation = -29205.520360 eV Core-core repulsion = 24615.891361 eV Total energy + Delta-G solvation = -4589.629000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.11055 -48.68209 -48.55857 -40.95900 -39.63063 -38.38944 -36.07010 -35.64559 -32.79635 -31.88655 -29.95962 -27.89233 -27.55185 -24.73409 -24.54265 -23.53001 -23.01568 -22.07179 -21.22921 -19.96230 -19.43356 -19.32328 -19.03803 -18.52018 -17.82783 -16.99016 -16.78800 -16.58149 -16.14687 -15.86803 -15.63341 -15.49504 -15.27824 -15.08454 -15.05248 -14.89324 -14.79140 -14.75423 -14.57610 -14.48555 -14.13697 -13.95643 -13.19301 -13.13395 -12.97247 -12.82443 -12.61085 -12.55199 -12.40285 -12.25715 -12.07952 -11.94784 -11.80155 -11.72503 -11.42055 -11.13730 -10.92277 -10.79674 -10.52442 -10.03036 -8.98083 -7.95917 -5.23316 1.45891 1.46340 1.56297 1.66435 1.73090 2.04975 2.48761 2.53809 2.80208 2.89724 2.93593 3.37358 3.40183 3.44358 3.70192 3.79805 3.84888 3.85949 3.97998 4.08727 4.12763 4.29118 4.41266 4.49175 4.49858 4.54207 4.65502 4.70316 4.73006 4.84593 4.91807 4.95324 4.99698 5.07661 5.12706 5.20424 5.27765 5.34148 5.38825 5.48066 5.49735 6.27013 6.58657 7.28978 7.34188 8.09876 8.36298 9.27454 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012585 B = 0.002664 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.344060 B =10506.089587 C =11937.987589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.188 3.812 11 C -0.140 4.140 12 C -0.079 4.079 13 C 0.136 3.864 14 N -0.722 5.722 15 C 0.499 3.501 16 O -0.565 6.565 17 C -0.098 4.098 18 C -0.207 4.207 19 C 0.478 3.522 20 F -0.188 7.188 21 F -0.188 7.188 22 F -0.183 7.183 23 C -0.129 4.129 24 C -0.117 4.117 25 C -0.163 4.163 26 C -0.151 4.151 27 H 0.252 0.748 28 H 0.378 0.622 29 H 0.010 0.990 30 H 0.016 0.984 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.414 0.586 36 H 0.153 0.847 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.392 -21.670 13.157 26.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.062 3.938 11 C -0.141 4.141 12 C -0.117 4.117 13 C 0.012 3.988 14 N -0.374 5.374 15 C 0.286 3.714 16 O -0.444 6.444 17 C -0.137 4.137 18 C -0.209 4.209 19 C 0.424 3.576 20 F -0.170 7.170 21 F -0.170 7.170 22 F -0.164 7.164 23 C -0.166 4.166 24 C -0.153 4.153 25 C -0.200 4.200 26 C -0.189 4.189 27 H 0.061 0.939 28 H 0.210 0.790 29 H 0.027 0.973 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.250 0.750 36 H 0.171 0.829 37 H 0.133 0.867 38 H 0.113 0.887 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.431 -21.978 13.197 26.430 hybrid contribution 0.476 1.983 -0.017 2.040 sum -5.956 -19.994 13.180 24.677 Atomic orbital electron populations 1.69798 1.06321 1.25950 1.59412 1.25476 0.96431 1.00733 1.03684 0.85137 0.78116 0.80102 0.76791 1.19542 1.21789 1.21935 1.19626 0.91316 0.85594 1.41299 0.91334 1.42440 1.05696 1.00572 1.89119 1.20216 0.92640 0.84219 0.96748 1.21414 1.01071 0.96415 0.95212 1.21117 0.97576 0.99815 0.93145 1.21130 0.92356 0.99982 0.85301 1.45980 1.24080 1.51720 1.15657 1.21141 0.87451 0.78398 0.84423 1.90737 1.26136 1.45297 1.82222 1.21266 0.99156 1.03839 0.89474 1.22138 1.03000 0.93791 1.01937 1.19865 0.81742 0.77718 0.78269 1.93224 1.44902 1.96077 1.82781 1.93142 1.90750 1.36846 1.96242 1.93137 1.96563 1.85094 1.41655 1.23020 1.01075 0.89923 1.02613 1.23542 0.98124 0.94096 0.99575 1.23036 1.00162 1.02886 0.93875 1.23055 0.99720 0.93518 1.02558 0.93944 0.78968 0.97250 0.96608 0.89158 0.92391 0.94469 0.90790 0.74994 0.82922 0.86697 0.88688 0.86559 0.83754 0.86689 0.87231 0.90242 0.88746 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.47 13.06 21.65 0.28 -58.19 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.74 -37.60 5.30 -343.46 -1.82 -39.42 16 10 C 0.19 7.79 6.09 86.38 0.53 8.31 16 11 C -0.14 -4.34 1.68 -52.18 -0.09 -4.43 16 12 C -0.08 -2.16 5.26 30.59 0.16 -2.00 16 13 C 0.14 3.56 5.42 86.38 0.47 4.03 16 14 N -0.72 -15.53 5.56 -463.05 -2.57 -18.10 16 15 C 0.50 11.38 7.74 87.66 0.68 12.06 16 16 O -0.57 -17.45 14.13 -3.02 -0.04 -17.50 16 17 C -0.10 -1.39 5.51 29.85 0.16 -1.22 16 18 C -0.21 -3.37 1.36 -52.18 -0.07 -3.44 16 19 C 0.48 10.94 3.18 71.98 0.23 11.17 16 20 F -0.19 -5.61 16.08 44.97 0.72 -4.89 16 21 F -0.19 -4.59 16.14 44.97 0.73 -3.87 16 22 F -0.18 -3.86 15.89 44.97 0.71 -3.15 16 23 C -0.13 -1.83 8.90 30.60 0.27 -1.55 16 24 C -0.12 -1.02 9.57 30.60 0.29 -0.73 16 25 C -0.16 -4.44 9.89 30.60 0.30 -4.13 16 26 C -0.15 -3.66 9.44 30.59 0.29 -3.38 16 27 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 28 H 0.38 20.10 7.01 -92.71 -0.65 19.45 16 29 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.02 0.67 8.11 -2.39 -0.02 0.65 16 31 H 0.09 1.99 7.88 -2.38 -0.02 1.97 16 32 H 0.06 1.95 7.22 -2.39 -0.02 1.94 16 33 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.07 1.81 7.18 -2.39 -0.02 1.79 16 35 H 0.41 6.68 8.47 -92.71 -0.79 5.90 16 36 H 0.15 0.89 7.95 -2.39 -0.02 0.87 16 37 H 0.11 1.54 7.19 -2.39 -0.02 1.52 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.14 0.38 8.08 -2.39 -0.02 0.36 16 41 H 0.11 0.97 7.22 -2.39 -0.02 0.95 16 42 H 0.11 2.53 8.03 -2.38 -0.02 2.51 16 43 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.11 2.26 7.39 -2.39 -0.02 2.24 16 Total: -1.00 -73.72 383.29 4.16 -69.56 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: -0.41 Total: 28.93 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 4.53 Total: -2.11 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -4.11 Total: -115.71 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.04 Total: -17.50 kcal Atomic # 9 Polarization: -14.07 SS G_CDS: 2.16 Total: -11.91 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -73.72 4.16 -69.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165450055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.973 kcal (2) G-P(sol) polarization free energy of solvation -73.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds