Wall clock time and date at job start Tue Mar 31 2020 21:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99836 * 2 1 4 4 H 1.48499 * 109.47206 * 240.00405 * 3 2 1 5 5 H 1.48501 * 109.46887 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46918 * 119.99964 * 3 2 1 7 7 C 1.38810 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00129 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00141 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47298 * 176.65756 * 10 9 7 12 12 C 1.53002 * 115.54502 * 297.23693 * 11 10 9 13 13 C 1.53004 * 109.47036 * 295.45710 * 12 11 10 14 14 N 1.46498 * 109.47117 * 185.10490 * 13 12 11 15 15 C 1.34774 * 120.00239 * 180.02562 * 14 13 12 16 16 O 1.21278 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 13 18 18 C 1.52997 * 112.85425 * 48.79893 * 17 15 14 19 19 F 1.39899 * 109.47323 * 191.19722 * 18 17 15 20 20 F 1.39899 * 109.47392 * 311.20070 * 18 17 15 21 21 F 1.39905 * 109.47089 * 71.19619 * 18 17 15 22 22 C 1.53784 * 113.61525 * 179.97438 * 17 15 14 23 23 C 1.53785 * 87.08102 * 89.11274 * 22 17 15 24 24 C 1.53784 * 87.17285 * 25.39311 * 23 22 17 25 25 C 1.52998 * 117.50193 * 82.90479 * 11 10 9 26 26 C 1.52993 * 117.50266 * 151.56532 * 11 10 9 27 27 H 0.97001 * 120.00150 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00118 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47263 * 56.65112 * 10 9 7 30 30 H 1.09010 * 109.46550 * 296.65221 * 10 9 7 31 31 H 1.09003 * 109.46699 * 175.46035 * 12 11 10 32 32 H 1.09001 * 109.47306 * 55.45915 * 12 11 10 33 33 H 1.08992 * 109.47043 * 65.10453 * 13 12 11 34 34 H 1.09002 * 109.47189 * 305.10494 * 13 12 11 35 35 H 0.97006 * 119.99823 * 359.97438 * 14 13 12 36 36 H 1.08999 * 113.60996 * 334.56766 * 22 17 15 37 37 H 1.08992 * 113.61769 * 203.66374 * 22 17 15 38 38 H 1.09000 * 113.61527 * 139.97817 * 23 22 17 39 39 H 1.09001 * 113.61475 * 270.80316 * 23 22 17 40 40 H 1.09001 * 113.61727 * 89.15295 * 24 23 22 41 41 H 1.09002 * 113.61517 * 220.06237 * 24 23 22 42 42 H 1.08994 * 117.50245 * 215.00694 * 25 11 10 43 43 H 1.09006 * 117.49849 * 0.02562 * 25 11 10 44 44 H 1.09001 * 117.49820 * 359.97438 * 26 11 10 45 45 H 1.08994 * 117.49969 * 144.99055 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0662 -4.8185 0.0836 12 6 0.2204 -4.8730 1.3574 13 6 1.1301 -5.1153 2.5636 14 7 0.3111 -5.2889 3.7658 15 6 0.9011 -5.5154 4.9562 16 8 2.1100 -5.5760 5.0320 17 6 0.0586 -5.6946 6.1927 18 6 -1.0831 -6.6935 5.9943 19 9 -1.9623 -6.6186 7.0799 20 9 -1.7709 -6.3876 4.8151 21 9 -0.5600 -7.9881 5.9064 22 6 0.8812 -5.9452 7.4677 23 6 0.9184 -4.4185 7.6493 24 6 -0.3839 -4.3661 6.8330 25 6 0.4127 -5.2853 -1.2187 26 6 1.4819 -6.1495 -0.5459 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0002 29 1 2.7291 -3.6889 0.8579 30 1 2.6391 -3.7408 -0.9191 31 1 -0.5028 -5.6848 1.2789 32 1 -0.3069 -3.9275 1.4842 33 1 1.7932 -4.2606 2.6960 34 1 1.7243 -6.0136 2.3959 35 1 -0.6558 -5.2401 3.7052 36 1 1.8596 -6.3860 7.2763 37 1 0.3274 -6.4646 8.2496 38 1 0.7979 -4.0989 8.6844 39 1 1.7636 -3.9403 7.1543 40 1 -1.2843 -4.4532 7.4411 41 1 -0.4254 -3.5341 6.1300 42 1 -0.6196 -5.6311 -1.1681 43 1 0.6899 -4.7649 -2.1356 44 1 2.4621 -6.1975 -1.0203 45 1 1.1531 -7.0641 -0.0524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165764482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:24 Heat of formation + Delta-G solvation = -135.385443 kcal Electronic energy + Delta-G solvation = -30097.621841 eV Core-core repulsion = 25508.866524 eV Total energy + Delta-G solvation = -4588.755317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.52411 -48.06081 -47.94483 -40.81274 -38.51849 -37.59277 -34.93294 -33.91959 -30.85653 -30.46300 -28.78817 -26.24599 -25.91979 -24.59621 -23.23388 -22.74961 -21.98988 -21.57121 -19.98730 -18.91877 -18.74526 -18.61683 -18.16003 -17.05185 -16.51886 -16.16570 -15.53036 -15.27551 -15.01808 -14.82476 -14.72405 -14.48816 -14.39732 -14.29119 -14.17221 -14.11780 -13.95318 -13.39461 -13.21274 -13.02785 -12.80541 -12.67883 -12.61117 -12.26182 -11.90805 -11.41896 -11.33146 -11.20450 -11.05202 -10.96196 -10.95144 -10.82306 -10.64151 -10.19514 -10.03701 -9.91365 -9.66067 -9.32077 -9.09928 -8.83599 -6.89745 -5.75592 -3.03424 2.00240 2.52289 2.80060 3.29132 3.44779 3.48229 3.49118 3.49986 3.65109 4.04859 4.08284 4.23481 4.32779 4.40897 4.61913 4.91763 4.98523 5.07513 5.15862 5.16546 5.29314 5.31476 5.47083 5.51900 5.56700 5.59121 5.63302 5.71502 5.75959 5.89620 5.94072 6.13289 6.17474 6.20846 6.37100 6.43731 6.46365 6.52872 6.75959 6.83263 7.33568 7.70848 7.98529 8.43554 9.55199 10.13350 10.49160 11.47200 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.003261 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.078109 B = 8583.406798 C = 9832.953225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.120 4.120 12 C -0.088 4.088 13 C 0.123 3.877 14 N -0.719 5.719 15 C 0.539 3.461 16 O -0.516 6.516 17 C -0.170 4.170 18 C 0.470 3.530 19 F -0.174 7.174 20 F -0.177 7.177 21 F -0.175 7.175 22 C -0.107 4.107 23 C -0.132 4.132 24 C -0.117 4.117 25 C -0.164 4.164 26 C -0.178 4.178 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.026 0.974 30 H 0.018 0.982 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.404 0.596 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 -15.850 13.914 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.121 4.121 12 C -0.126 4.126 13 C 0.000 4.000 14 N -0.373 5.373 15 C 0.322 3.678 16 O -0.391 6.391 17 C -0.175 4.175 18 C 0.416 3.584 19 F -0.155 7.155 20 F -0.159 7.159 21 F -0.156 7.156 22 C -0.144 4.144 23 C -0.170 4.170 24 C -0.155 4.155 25 C -0.201 4.201 26 C -0.215 4.215 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.242 0.758 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.922 -15.782 13.929 21.252 hybrid contribution -0.671 0.735 -0.252 1.027 sum -3.594 -15.047 13.677 20.649 Atomic orbital electron populations 1.69646 1.05062 1.25662 1.57887 1.24698 0.95485 0.97549 1.03098 0.86295 0.78550 0.83650 0.77869 1.21303 1.21714 1.21301 1.19193 0.91004 0.84193 1.42582 0.91321 1.42275 1.05868 0.99607 1.89371 1.20193 0.91839 0.84151 0.97838 1.21559 1.01407 0.95999 0.93124 1.21213 0.96874 1.02794 0.91738 1.21462 0.93800 1.02415 0.82303 1.46310 1.11644 1.71757 1.07574 1.19048 0.87968 0.77705 0.83073 1.90735 1.13307 1.49860 1.85221 1.23727 0.95770 0.98979 0.99036 1.20065 0.83205 0.81353 0.73802 1.93175 1.71074 1.96207 1.55031 1.93063 1.81534 1.92703 1.48587 1.93219 1.86343 1.40156 1.95884 1.22880 1.00957 0.98727 0.91874 1.22811 0.97533 0.95361 1.01263 1.23096 1.00130 0.92949 0.99298 1.22949 0.97306 1.03103 0.96761 1.22999 0.99880 0.94055 1.04587 0.93545 0.78170 0.95624 0.96449 0.91995 0.89671 0.90082 0.91399 0.75794 0.88338 0.88354 0.89814 0.88663 0.87489 0.89034 0.89300 0.88553 0.88922 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.07 5.44 -59.90 -0.33 -18.40 16 10 C 0.19 3.76 5.89 -4.04 -0.02 3.74 16 11 C -0.12 -1.91 1.57 -154.51 -0.24 -2.15 16 12 C -0.09 -1.30 5.10 -26.73 -0.14 -1.43 16 13 C 0.12 1.81 5.39 -4.04 -0.02 1.79 16 14 N -0.72 -9.49 5.25 -60.30 -0.32 -9.81 16 15 C 0.54 7.33 6.65 -10.99 -0.07 7.26 16 16 O -0.52 -8.58 15.75 5.56 0.09 -8.50 16 17 C -0.17 -1.76 0.88 -154.75 -0.14 -1.90 16 18 C 0.47 4.78 2.66 37.16 0.10 4.88 16 19 F -0.17 -1.62 15.77 2.25 0.04 -1.58 16 20 F -0.18 -1.86 14.41 2.25 0.03 -1.82 16 21 F -0.17 -1.95 17.17 2.25 0.04 -1.91 16 22 C -0.11 -0.95 6.81 -25.92 -0.18 -1.12 16 23 C -0.13 -1.12 7.73 -25.91 -0.20 -1.32 16 24 C -0.12 -1.01 7.11 -25.82 -0.18 -1.19 16 25 C -0.16 -2.40 9.94 -26.70 -0.27 -2.66 16 26 C -0.18 -2.36 9.95 -26.70 -0.27 -2.62 16 27 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.38 10.00 7.11 -40.82 -0.29 9.71 16 29 H 0.03 0.53 7.17 -51.93 -0.37 0.16 16 30 H 0.02 0.36 8.11 -51.92 -0.42 -0.06 16 31 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.08 1.43 7.53 -51.93 -0.39 1.04 16 33 H 0.08 1.41 7.27 -51.93 -0.38 1.03 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.40 4.71 5.94 -40.82 -0.24 4.47 16 36 H 0.10 0.99 7.43 -51.93 -0.39 0.61 16 37 H 0.10 0.68 7.88 -51.93 -0.41 0.27 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.97 8.07 -51.93 -0.42 0.56 16 40 H 0.11 0.74 7.15 -51.93 -0.37 0.37 16 41 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 42 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 377.75 15.07 5.69 5.69 Total: -1.00 -31.21 377.75 -7.53 -38.74 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.60 Total: 11.36 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.87 Total: -3.99 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.08 Total: -55.36 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.11 Total: -5.32 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.21 -7.53 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165764482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.646 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds