Wall clock time and date at job start Tue Mar 31 2020 21:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99836 * 2 1 4 4 H 1.48499 * 109.47206 * 240.00405 * 3 2 1 5 5 H 1.48501 * 109.46887 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46918 * 119.99964 * 3 2 1 7 7 C 1.38810 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00129 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00141 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47298 * 176.65756 * 10 9 7 12 12 C 1.53002 * 115.54502 * 297.23693 * 11 10 9 13 13 C 1.53004 * 109.47036 * 295.45710 * 12 11 10 14 14 N 1.46498 * 109.47117 * 185.10490 * 13 12 11 15 15 C 1.34774 * 120.00239 * 180.02562 * 14 13 12 16 16 O 1.21278 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00022 * 180.02562 * 15 14 13 18 18 C 1.52997 * 112.85425 * 48.79893 * 17 15 14 19 19 F 1.39899 * 109.47323 * 191.19722 * 18 17 15 20 20 F 1.39899 * 109.47392 * 311.20070 * 18 17 15 21 21 F 1.39905 * 109.47089 * 71.19619 * 18 17 15 22 22 C 1.53784 * 113.61525 * 179.97438 * 17 15 14 23 23 C 1.53785 * 87.08102 * 89.11274 * 22 17 15 24 24 C 1.53784 * 87.17285 * 25.39311 * 23 22 17 25 25 C 1.52998 * 117.50193 * 82.90479 * 11 10 9 26 26 C 1.52993 * 117.50266 * 151.56532 * 11 10 9 27 27 H 0.97001 * 120.00150 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00118 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47263 * 56.65112 * 10 9 7 30 30 H 1.09010 * 109.46550 * 296.65221 * 10 9 7 31 31 H 1.09003 * 109.46699 * 175.46035 * 12 11 10 32 32 H 1.09001 * 109.47306 * 55.45915 * 12 11 10 33 33 H 1.08992 * 109.47043 * 65.10453 * 13 12 11 34 34 H 1.09002 * 109.47189 * 305.10494 * 13 12 11 35 35 H 0.97006 * 119.99823 * 359.97438 * 14 13 12 36 36 H 1.08999 * 113.60996 * 334.56766 * 22 17 15 37 37 H 1.08992 * 113.61769 * 203.66374 * 22 17 15 38 38 H 1.09000 * 113.61527 * 139.97817 * 23 22 17 39 39 H 1.09001 * 113.61475 * 270.80316 * 23 22 17 40 40 H 1.09001 * 113.61727 * 89.15295 * 24 23 22 41 41 H 1.09002 * 113.61517 * 220.06237 * 24 23 22 42 42 H 1.08994 * 117.50245 * 215.00694 * 25 11 10 43 43 H 1.09006 * 117.49849 * 0.02562 * 25 11 10 44 44 H 1.09001 * 117.49820 * 359.97438 * 26 11 10 45 45 H 1.08994 * 117.49969 * 144.99055 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0662 -4.8185 0.0836 12 6 0.2204 -4.8730 1.3574 13 6 1.1301 -5.1153 2.5636 14 7 0.3111 -5.2889 3.7658 15 6 0.9011 -5.5154 4.9562 16 8 2.1100 -5.5760 5.0320 17 6 0.0586 -5.6946 6.1927 18 6 -1.0831 -6.6935 5.9943 19 9 -1.9623 -6.6186 7.0799 20 9 -1.7709 -6.3876 4.8151 21 9 -0.5600 -7.9881 5.9064 22 6 0.8812 -5.9452 7.4677 23 6 0.9184 -4.4185 7.6493 24 6 -0.3839 -4.3661 6.8330 25 6 0.4127 -5.2853 -1.2187 26 6 1.4819 -6.1495 -0.5459 27 1 -0.4850 0.8400 -0.0004 28 1 0.3557 -2.3881 0.0002 29 1 2.7291 -3.6889 0.8579 30 1 2.6391 -3.7408 -0.9191 31 1 -0.5028 -5.6848 1.2789 32 1 -0.3069 -3.9275 1.4842 33 1 1.7932 -4.2606 2.6960 34 1 1.7243 -6.0136 2.3959 35 1 -0.6558 -5.2401 3.7052 36 1 1.8596 -6.3860 7.2763 37 1 0.3274 -6.4646 8.2496 38 1 0.7979 -4.0989 8.6844 39 1 1.7636 -3.9403 7.1543 40 1 -1.2843 -4.4532 7.4411 41 1 -0.4254 -3.5341 6.1300 42 1 -0.6196 -5.6311 -1.1681 43 1 0.6899 -4.7649 -2.1356 44 1 2.4621 -6.1975 -1.0203 45 1 1.1531 -7.0641 -0.0524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165764482.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:15 Heat of formation + Delta-G solvation = -154.010810 kcal Electronic energy + Delta-G solvation = -30098.429497 eV Core-core repulsion = 25508.866524 eV Total energy + Delta-G solvation = -4589.562973 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 15.77 seconds Orbital eigenvalues (eV) -51.33199 -48.86179 -48.75877 -41.78044 -39.74262 -38.59410 -36.18583 -35.80171 -32.78968 -31.65551 -29.68578 -27.77337 -26.93024 -25.62168 -24.63685 -24.21523 -23.13668 -22.63884 -20.94930 -19.98524 -19.57629 -19.53721 -19.32207 -18.90348 -17.39279 -17.31372 -16.84517 -16.56674 -16.14414 -16.10202 -15.71429 -15.59256 -15.44264 -15.23605 -15.17968 -15.02605 -14.92636 -14.89702 -14.68121 -14.26466 -13.98921 -13.85999 -13.49079 -13.41149 -13.17073 -13.03265 -12.76791 -12.55510 -12.29813 -12.23828 -12.11936 -11.93116 -11.86815 -11.78397 -11.69211 -11.19480 -11.07139 -10.90013 -10.57668 -10.27172 -8.97073 -7.94411 -5.21958 1.03801 1.46255 1.48670 1.54765 1.60667 1.80432 2.48302 2.54354 2.65656 2.81873 2.89563 3.28475 3.38439 3.42384 3.50387 3.63805 3.77469 3.83577 3.97607 4.03433 4.17893 4.23420 4.40327 4.47325 4.53698 4.57363 4.60882 4.75902 4.82969 4.86325 4.90233 4.95662 4.98061 5.07620 5.15042 5.22799 5.25002 5.25686 5.33242 5.35621 5.48684 6.26414 6.27786 6.91707 7.35147 8.11186 8.37094 9.28605 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.003261 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.078109 B = 8583.406798 C = 9832.953225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.248 4.248 8 H 0.069 0.931 9 N -0.735 5.735 10 C 0.188 3.812 11 C -0.142 4.142 12 C -0.076 4.076 13 C 0.132 3.868 14 N -0.715 5.715 15 C 0.535 3.465 16 O -0.552 6.552 17 C -0.174 4.174 18 C 0.475 3.525 19 F -0.164 7.164 20 F -0.179 7.179 21 F -0.180 7.180 22 C -0.102 4.102 23 C -0.131 4.131 24 C -0.111 4.111 25 C -0.164 4.164 26 C -0.149 4.149 27 H 0.251 0.749 28 H 0.376 0.624 29 H 0.018 0.982 30 H 0.014 0.986 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.412 0.588 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 -17.050 14.812 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.380 4.380 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.062 3.938 11 C -0.143 4.143 12 C -0.113 4.113 13 C 0.009 3.991 14 N -0.369 5.369 15 C 0.319 3.681 16 O -0.430 6.430 17 C -0.179 4.179 18 C 0.421 3.579 19 F -0.145 7.145 20 F -0.161 7.161 21 F -0.162 7.162 22 C -0.140 4.140 23 C -0.168 4.168 24 C -0.148 4.148 25 C -0.201 4.201 26 C -0.186 4.186 27 H 0.060 0.940 28 H 0.209 0.791 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.252 0.748 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.150 0.850 41 H 0.099 0.901 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.553 -17.010 14.821 22.839 hybrid contribution -0.428 1.061 -0.546 1.268 sum -3.982 -15.949 14.275 21.772 Atomic orbital electron populations 1.69792 1.06380 1.26057 1.59329 1.25458 0.96350 1.00694 1.03623 0.85295 0.77327 0.79572 0.78068 1.20531 1.21857 1.20704 1.19567 0.91331 0.85594 1.41522 0.91261 1.42412 1.05615 1.00573 1.89166 1.20238 0.92596 0.84048 0.96946 1.21408 1.01969 0.96280 0.94615 1.21077 0.96808 1.02457 0.90982 1.21234 0.93673 1.01107 0.83124 1.46291 1.11957 1.71385 1.07282 1.19594 0.87916 0.76642 0.83904 1.90713 1.15025 1.51414 1.85865 1.23720 0.95880 1.00361 0.97901 1.19949 0.83121 0.80921 0.73944 1.93193 1.70680 1.96140 1.54516 1.93056 1.81539 1.92680 1.48814 1.93212 1.86473 1.40572 1.95926 1.22958 1.00289 0.99121 0.91591 1.22774 0.96521 0.94977 1.02519 1.23185 1.01193 0.91381 0.99077 1.22995 0.98810 1.03127 0.95137 1.23091 0.99738 0.93265 1.02530 0.93984 0.79117 0.96460 0.96846 0.89052 0.92311 0.93570 0.90853 0.74806 0.89886 0.85710 0.87129 0.91131 0.84969 0.90093 0.87431 0.90011 0.88430 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.65 13.06 21.65 0.28 -58.36 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.97 46.49 29.55 68.60 2.03 48.51 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 8 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 9 N -0.73 -37.48 5.44 -343.44 -1.87 -39.35 16 10 C 0.19 7.70 5.89 86.38 0.51 8.21 16 11 C -0.14 -4.42 1.57 -52.18 -0.08 -4.50 16 12 C -0.08 -2.17 5.10 30.60 0.16 -2.02 16 13 C 0.13 3.93 5.39 86.38 0.47 4.39 16 14 N -0.71 -18.81 5.25 -463.07 -2.43 -21.25 16 15 C 0.53 14.59 6.65 87.66 0.58 15.17 16 16 O -0.55 -18.89 15.75 -3.02 -0.05 -18.94 16 17 C -0.17 -3.41 0.88 -52.34 -0.05 -3.45 16 18 C 0.48 8.80 2.66 71.98 0.19 8.99 16 19 F -0.16 -2.61 15.77 44.97 0.71 -1.90 16 20 F -0.18 -3.45 14.41 44.97 0.65 -2.80 16 21 F -0.18 -3.74 17.17 44.97 0.77 -2.96 16 22 C -0.10 -1.67 6.81 31.12 0.21 -1.45 16 23 C -0.13 -2.05 7.73 31.12 0.24 -1.81 16 24 C -0.11 -1.74 7.11 31.18 0.22 -1.52 16 25 C -0.16 -4.52 9.94 30.62 0.30 -4.21 16 26 C -0.15 -3.59 9.95 30.61 0.30 -3.28 16 27 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.38 20.18 7.11 -92.71 -0.66 19.52 16 29 H 0.02 0.74 7.17 -2.39 -0.02 0.72 16 30 H 0.01 0.57 8.11 -2.38 -0.02 0.55 16 31 H 0.09 2.09 8.10 -2.39 -0.02 2.07 16 32 H 0.06 2.01 7.53 -2.39 -0.02 1.99 16 33 H 0.05 1.69 7.27 -2.39 -0.02 1.68 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.41 9.35 5.94 -92.70 -0.55 8.80 16 36 H 0.08 1.65 7.43 -2.39 -0.02 1.63 16 37 H 0.12 1.37 7.88 -2.39 -0.02 1.36 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.47 8.07 -2.39 -0.02 1.45 16 40 H 0.13 1.43 7.15 -2.39 -0.02 1.42 16 41 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 42 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 44 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -68.31 377.75 4.27 -64.03 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.18 Total: 35.25 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.37 Total: -2.24 kcal Atomic # 7 Polarization: -114.94 SS G_CDS: -4.02 Total: -118.95 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.05 Total: -18.94 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 2.13 Total: -7.67 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -68.31 4.27 -64.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165764482.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.978 kcal (2) G-P(sol) polarization free energy of solvation -68.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.77 seconds