Wall clock time and date at job start Tue Mar 31 2020 20:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00064 * 2 1 4 4 H 1.48509 * 109.46846 * 240.00113 * 3 2 1 5 5 H 1.48496 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47434 * 120.00226 * 3 2 1 7 7 C 1.38811 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00072 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47002 * 174.37671 * 10 9 7 12 12 C 1.53002 * 115.54721 * 294.94793 * 11 10 9 13 13 C 1.52996 * 109.47442 * 279.33026 * 12 11 10 14 14 N 1.46505 * 109.47301 * 175.45884 * 13 12 11 15 15 C 1.34774 * 120.00178 * 179.97438 * 14 13 12 16 16 O 1.21691 * 119.99913 * 359.97438 * 15 14 13 17 17 C 1.46658 * 120.00049 * 179.97438 * 15 14 13 18 18 O 1.35389 * 126.11584 * 0.02772 * 17 15 14 19 19 C 1.34403 * 109.47373 * 179.97438 * 18 17 15 20 20 C 1.33901 * 108.55878 * 359.95717 * 19 18 17 21 21 C 1.35189 * 126.11813 * 179.97438 * 17 15 14 22 22 C 1.50485 * 130.61055 * 0.31410 * 21 17 15 23 23 C 1.53678 * 107.56044 * 164.09395 * 22 21 17 24 24 O 1.42906 * 109.89214 * 48.26628 * 23 22 21 25 25 C 1.43513 * 114.76870 * 287.67819 * 24 23 22 26 26 C 1.52996 * 117.52019 * 80.65105 * 11 10 9 27 27 C 1.52994 * 117.50015 * 149.28658 * 11 10 9 28 28 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99620 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.46872 * 54.37384 * 10 9 7 31 31 H 1.09003 * 109.47418 * 294.37353 * 10 9 7 32 32 H 1.09001 * 109.47204 * 159.32676 * 12 11 10 33 33 H 1.09005 * 109.46852 * 39.33179 * 12 11 10 34 34 H 1.09000 * 109.47527 * 55.45250 * 13 12 11 35 35 H 1.09000 * 109.46823 * 295.45296 * 13 12 11 36 36 H 0.97001 * 119.99500 * 359.97438 * 14 13 12 37 37 H 1.08004 * 125.71607 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.74655 * 44.60652 * 22 21 17 39 39 H 1.09001 * 109.86644 * 283.64933 * 22 21 17 40 40 H 1.09003 * 109.38818 * 288.16684 * 23 22 21 41 41 H 1.08996 * 109.38722 * 168.36974 * 23 22 21 42 42 H 1.08995 * 109.82922 * 171.03944 * 25 24 23 43 43 H 1.09007 * 109.82412 * 291.90407 * 25 24 23 44 44 H 1.08996 * 117.50023 * 214.96467 * 26 11 10 45 45 H 1.08998 * 117.50224 * 359.97438 * 26 11 10 46 46 H 1.09003 * 117.49987 * 359.96663 * 27 11 10 47 47 H 1.08997 * 117.50470 * 144.99321 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0698 -4.8163 0.1399 12 6 0.3091 -4.8768 1.4661 13 6 1.1979 -5.5154 2.5352 14 7 0.5114 -5.4750 3.8289 15 6 1.1079 -5.9851 4.9245 16 8 2.2165 -6.4796 4.8392 17 6 0.4209 -5.9441 6.2196 18 8 -0.8079 -5.4267 6.4551 19 6 -1.1105 -5.5655 7.7573 20 6 -0.0859 -6.1713 8.3706 21 6 0.9008 -6.4171 7.3916 22 6 2.2096 -7.0854 7.7157 23 6 2.3849 -7.0459 9.2420 24 8 1.1869 -7.4921 9.8807 25 6 0.0902 -6.5688 9.8140 26 6 0.3314 -5.2736 -1.1196 27 6 1.4394 -6.1445 -0.5236 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.7587 -3.6725 0.8331 31 1 2.6062 -3.7591 -0.9382 32 1 -0.5939 -5.4740 1.3400 33 1 0.0371 -3.8675 1.7751 34 1 2.1360 -4.9648 2.6044 35 1 1.4036 -6.5512 2.2653 36 1 -0.3725 -5.0812 3.8967 37 1 -2.0266 -5.2429 8.2296 38 1 3.0267 -6.5476 7.2351 39 1 2.1927 -8.1195 7.3716 40 1 2.6029 -6.0247 9.5548 41 1 3.2113 -7.6963 9.5282 42 1 -0.8183 -7.0467 10.1803 43 1 0.3121 -5.6871 10.4155 44 1 -0.6963 -5.6177 -1.0035 45 1 0.5491 -4.7482 -2.0494 46 1 2.3862 -6.1921 -1.0615 47 1 1.1405 -7.0613 -0.0155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166404139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:12 Heat of formation + Delta-G solvation = -33.983484 kcal Electronic energy + Delta-G solvation = -28243.617154 eV Core-core repulsion = 24201.115696 eV Total energy + Delta-G solvation = -4042.501458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 10.78 seconds Orbital eigenvalues (eV) -43.10974 -39.57781 -38.87342 -38.24412 -35.05458 -33.93363 -33.80138 -32.39479 -30.80705 -30.53939 -29.06947 -26.58097 -26.00701 -24.55988 -23.54680 -22.78956 -22.47842 -21.65469 -20.35493 -19.99037 -18.76782 -18.01910 -17.06169 -16.84094 -16.59800 -16.35312 -15.92861 -15.58540 -15.43975 -15.21328 -14.96122 -14.46045 -14.28284 -14.13246 -13.77499 -13.44293 -13.35496 -13.09047 -12.97711 -12.68848 -12.52803 -12.25121 -11.93483 -11.89671 -11.48710 -11.24595 -11.14540 -10.97121 -10.82893 -10.68465 -10.40329 -10.17268 -10.05230 -9.91309 -9.74988 -9.65939 -9.33691 -9.21730 -8.85845 -8.81485 -6.90248 -5.75952 -3.03830 0.83991 1.91859 2.43019 3.03098 3.10513 3.42898 3.44391 3.48667 3.49587 4.04705 4.11753 4.31306 4.55095 4.61524 4.62991 4.86881 4.91529 4.97881 5.00084 5.06307 5.12951 5.16395 5.29589 5.33493 5.47427 5.51732 5.55945 5.58882 5.65225 5.66929 5.72935 5.76477 5.90709 6.01330 6.11334 6.17054 6.22328 6.32673 6.42476 6.45746 6.50502 6.56381 6.75349 6.75778 6.84022 7.38419 7.70378 7.98689 8.43277 9.54779 10.13115 10.48865 11.46857 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.002463 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.435533 B =11363.458934 C =12543.697856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.092 4.092 13 C 0.124 3.876 14 N -0.714 5.714 15 C 0.600 3.400 16 O -0.519 6.519 17 C -0.062 4.062 18 O -0.165 6.165 19 C 0.015 3.985 20 C -0.241 4.241 21 C -0.086 4.086 22 C -0.087 4.087 23 C 0.062 3.938 24 O -0.380 6.380 25 C 0.136 3.864 26 C -0.164 4.164 27 C -0.178 4.178 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.027 0.973 31 H 0.017 0.983 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.406 0.594 37 H 0.212 0.788 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -16.552 16.988 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.002 3.998 14 N -0.364 5.364 15 C 0.386 3.614 16 O -0.397 6.397 17 C -0.114 4.114 18 O -0.062 6.062 19 C -0.054 4.054 20 C -0.242 4.242 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.014 4.014 24 O -0.298 6.298 25 C 0.059 3.941 26 C -0.201 4.201 27 C -0.215 4.215 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.044 0.956 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.241 0.759 37 H 0.229 0.771 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.927 -16.817 16.746 23.811 hybrid contribution -0.410 1.501 -0.087 1.558 sum -2.338 -15.316 16.659 22.750 Atomic orbital electron populations 1.69647 1.05062 1.25676 1.57883 1.24713 0.95511 0.97597 1.03135 0.86281 0.78532 0.83613 0.77857 1.21305 1.21716 1.21305 1.19189 0.90992 0.84190 1.42556 0.91327 1.42285 1.05890 0.99631 1.89342 1.20184 0.91900 0.84189 0.97728 1.21554 1.01769 0.96057 0.92637 1.21260 0.96844 1.02391 0.92442 1.21464 0.96560 1.01318 0.80497 1.45961 1.21631 1.60277 1.08500 1.16483 0.84771 0.78931 0.81211 1.90868 1.18337 1.46125 1.84400 1.21479 0.86216 1.07477 0.96185 1.84334 1.30950 1.63709 1.27182 1.23632 1.00213 1.00812 0.80736 1.21018 0.96261 1.07777 0.99173 1.20137 0.97901 0.99739 0.91133 1.20847 0.93473 1.01450 0.96661 1.22719 0.87102 1.00398 0.91226 1.87979 1.21091 1.44143 1.76602 1.21030 0.90640 0.93242 0.89143 1.22965 0.96454 1.03053 0.97650 1.22980 1.00081 0.94022 1.04427 0.93535 0.78156 0.95563 0.96527 0.91838 0.89327 0.90523 0.91330 0.75925 0.77117 0.88325 0.89112 0.92685 0.87989 0.87597 0.91470 0.89310 0.88564 0.88899 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.16 5.30 -59.91 -0.32 -18.48 16 10 C 0.19 3.77 6.10 -4.04 -0.02 3.75 16 11 C -0.12 -1.89 1.52 -154.51 -0.23 -2.12 16 12 C -0.09 -1.33 5.24 -26.73 -0.14 -1.47 16 13 C 0.12 1.74 5.51 -4.04 -0.02 1.72 16 14 N -0.71 -9.49 5.55 -61.62 -0.34 -9.84 16 15 C 0.60 8.76 7.79 -12.86 -0.10 8.66 16 16 O -0.52 -8.76 15.63 5.20 0.08 -8.68 16 17 C -0.06 -0.81 7.11 -37.27 -0.27 -1.08 16 18 O -0.17 -1.87 10.44 2.34 0.02 -1.85 16 19 C 0.02 0.13 12.06 29.21 0.35 0.48 16 20 C -0.24 -2.33 6.04 -105.02 -0.63 -2.97 16 21 C -0.09 -1.04 6.02 -104.70 -0.63 -1.67 16 22 C -0.09 -0.94 5.69 -27.64 -0.16 -1.09 16 23 C 0.06 0.54 6.76 37.51 0.25 0.79 16 24 O -0.38 -3.73 10.70 -35.23 -0.38 -4.11 16 25 C 0.14 1.04 7.27 36.03 0.26 1.30 16 26 C -0.16 -2.39 9.90 -26.73 -0.26 -2.66 16 27 C -0.18 -2.34 9.57 -26.73 -0.26 -2.60 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.38 10.06 7.46 -40.82 -0.30 9.76 16 30 H 0.03 0.54 7.69 -51.93 -0.40 0.15 16 31 H 0.02 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 33 H 0.09 1.51 7.64 -51.93 -0.40 1.11 16 34 H 0.08 1.23 7.69 -51.93 -0.40 0.83 16 35 H 0.07 0.92 7.80 -51.93 -0.41 0.52 16 36 H 0.41 4.74 8.24 -40.82 -0.34 4.40 16 37 H 0.21 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.10 1.11 7.63 -51.93 -0.40 0.72 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 45 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.09 1.04 7.98 -51.93 -0.41 0.63 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -33.58 390.99 -8.67 -42.25 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.23 Total: 10.89 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.11 Total: -6.25 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.07 Total: -55.63 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.27 Total: -14.63 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.58 -8.67 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166404139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.268 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.78 seconds