Wall clock time and date at job start Tue Mar 31 2020 20:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86798 * 120.00064 * 2 1 4 4 H 1.48509 * 109.46846 * 240.00113 * 3 2 1 5 5 H 1.48496 * 109.47147 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47434 * 120.00226 * 3 2 1 7 7 C 1.38811 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00214 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00072 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47002 * 174.37671 * 10 9 7 12 12 C 1.53002 * 115.54721 * 294.94793 * 11 10 9 13 13 C 1.52996 * 109.47442 * 279.33026 * 12 11 10 14 14 N 1.46505 * 109.47301 * 175.45884 * 13 12 11 15 15 C 1.34774 * 120.00178 * 179.97438 * 14 13 12 16 16 O 1.21691 * 119.99913 * 359.97438 * 15 14 13 17 17 C 1.46658 * 120.00049 * 179.97438 * 15 14 13 18 18 O 1.35389 * 126.11584 * 0.02772 * 17 15 14 19 19 C 1.34403 * 109.47373 * 179.97438 * 18 17 15 20 20 C 1.33901 * 108.55878 * 359.95717 * 19 18 17 21 21 C 1.35189 * 126.11813 * 179.97438 * 17 15 14 22 22 C 1.50485 * 130.61055 * 0.31410 * 21 17 15 23 23 C 1.53678 * 107.56044 * 164.09395 * 22 21 17 24 24 O 1.42906 * 109.89214 * 48.26628 * 23 22 21 25 25 C 1.43513 * 114.76870 * 287.67819 * 24 23 22 26 26 C 1.52996 * 117.52019 * 80.65105 * 11 10 9 27 27 C 1.52994 * 117.50015 * 149.28658 * 11 10 9 28 28 H 0.97001 * 120.00214 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99620 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.46872 * 54.37384 * 10 9 7 31 31 H 1.09003 * 109.47418 * 294.37353 * 10 9 7 32 32 H 1.09001 * 109.47204 * 159.32676 * 12 11 10 33 33 H 1.09005 * 109.46852 * 39.33179 * 12 11 10 34 34 H 1.09000 * 109.47527 * 55.45250 * 13 12 11 35 35 H 1.09000 * 109.46823 * 295.45296 * 13 12 11 36 36 H 0.97001 * 119.99500 * 359.97438 * 14 13 12 37 37 H 1.08004 * 125.71607 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.74655 * 44.60652 * 22 21 17 39 39 H 1.09001 * 109.86644 * 283.64933 * 22 21 17 40 40 H 1.09003 * 109.38818 * 288.16684 * 23 22 21 41 41 H 1.08996 * 109.38722 * 168.36974 * 23 22 21 42 42 H 1.08995 * 109.82922 * 171.03944 * 25 24 23 43 43 H 1.09007 * 109.82412 * 291.90407 * 25 24 23 44 44 H 1.08996 * 117.50023 * 214.96467 * 26 11 10 45 45 H 1.08998 * 117.50224 * 359.97438 * 26 11 10 46 46 H 1.09003 * 117.49987 * 359.96663 * 27 11 10 47 47 H 1.08997 * 117.50470 * 144.99321 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.0698 -4.8163 0.1399 12 6 0.3091 -4.8768 1.4661 13 6 1.1979 -5.5154 2.5352 14 7 0.5114 -5.4750 3.8289 15 6 1.1079 -5.9851 4.9245 16 8 2.2165 -6.4796 4.8392 17 6 0.4209 -5.9441 6.2196 18 8 -0.8079 -5.4267 6.4551 19 6 -1.1105 -5.5655 7.7573 20 6 -0.0859 -6.1713 8.3706 21 6 0.9008 -6.4171 7.3916 22 6 2.2096 -7.0854 7.7157 23 6 2.3849 -7.0459 9.2420 24 8 1.1869 -7.4921 9.8807 25 6 0.0902 -6.5688 9.8140 26 6 0.3314 -5.2736 -1.1196 27 6 1.4394 -6.1445 -0.5236 28 1 -0.4850 0.8400 -0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 2.7587 -3.6725 0.8331 31 1 2.6062 -3.7591 -0.9382 32 1 -0.5939 -5.4740 1.3400 33 1 0.0371 -3.8675 1.7751 34 1 2.1360 -4.9648 2.6044 35 1 1.4036 -6.5512 2.2653 36 1 -0.3725 -5.0812 3.8967 37 1 -2.0266 -5.2429 8.2296 38 1 3.0267 -6.5476 7.2351 39 1 2.1927 -8.1195 7.3716 40 1 2.6029 -6.0247 9.5548 41 1 3.2113 -7.6963 9.5282 42 1 -0.8183 -7.0467 10.1803 43 1 0.3121 -5.6871 10.4155 44 1 -0.6963 -5.6177 -1.0035 45 1 0.5491 -4.7482 -2.0494 46 1 2.3862 -6.1921 -1.0615 47 1 1.1405 -7.0613 -0.0155 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166404139.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:06 Heat of formation + Delta-G solvation = -57.069760 kcal Electronic energy + Delta-G solvation = -28244.618250 eV Core-core repulsion = 24201.115696 eV Total energy + Delta-G solvation = -4043.502554 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 11.62 seconds Orbital eigenvalues (eV) -43.91589 -40.71347 -39.57113 -39.51457 -36.27033 -35.79452 -34.64345 -33.12992 -32.78804 -31.64721 -29.99957 -27.82956 -27.22244 -25.59906 -24.63493 -24.39588 -23.58251 -22.80417 -21.37089 -20.76903 -20.02630 -19.21765 -18.85840 -17.68864 -17.35921 -17.32885 -16.86117 -16.79139 -16.51831 -16.22303 -16.02566 -15.95686 -15.56054 -15.30929 -15.03583 -14.80636 -14.51975 -14.28846 -14.13494 -13.83880 -13.68439 -13.27380 -13.20860 -13.03466 -12.77173 -12.62001 -12.60385 -12.29261 -12.20306 -11.99741 -11.92578 -11.86086 -11.49034 -11.09089 -10.91356 -10.83777 -10.59021 -10.55708 -10.29615 -9.66750 -8.98194 -7.95395 -5.22990 -0.06767 1.17445 1.45353 1.47948 1.54051 1.56932 1.97248 2.12573 2.53526 2.80593 2.88505 3.36938 3.37392 3.56235 3.74821 3.80598 3.84714 3.91500 3.95842 4.05004 4.16976 4.21770 4.27401 4.35314 4.38212 4.46654 4.49612 4.60220 4.69639 4.76729 4.79300 4.83655 4.90065 4.94485 4.95356 5.01684 5.07502 5.12569 5.22215 5.24764 5.29824 5.33746 5.36596 5.47828 5.70347 6.11698 6.26933 6.34010 6.90642 7.34048 8.10409 8.36144 9.27675 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.002463 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.435533 B =11363.458934 C =12543.697856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.970 3.030 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.187 3.813 11 C -0.139 4.139 12 C -0.078 4.078 13 C 0.133 3.867 14 N -0.708 5.708 15 C 0.597 3.403 16 O -0.552 6.552 17 C -0.095 4.095 18 O -0.174 6.174 19 C 0.035 3.965 20 C -0.255 4.255 21 C -0.096 4.096 22 C -0.089 4.089 23 C 0.066 3.934 24 O -0.396 6.396 25 C 0.133 3.867 26 C -0.164 4.164 27 C -0.149 4.149 28 H 0.251 0.749 29 H 0.376 0.624 30 H 0.018 0.982 31 H 0.014 0.986 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.414 0.586 37 H 0.260 0.740 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.120 0.880 42 H 0.131 0.869 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.551 -17.408 18.354 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.264 4.264 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.061 3.939 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.010 3.990 14 N -0.359 5.359 15 C 0.384 3.616 16 O -0.433 6.433 17 C -0.146 4.146 18 O -0.071 6.071 19 C -0.033 4.033 20 C -0.257 4.257 21 C -0.099 4.099 22 C -0.127 4.127 23 C -0.010 4.010 24 O -0.314 6.314 25 C 0.058 3.942 26 C -0.201 4.201 27 C -0.187 4.187 28 H 0.060 0.940 29 H 0.209 0.791 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.250 0.750 37 H 0.276 0.724 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.099 0.901 46 H 0.116 0.884 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.778 -17.693 18.106 25.467 hybrid contribution -0.149 1.728 -0.472 1.797 sum -2.928 -15.965 17.634 23.967 Atomic orbital electron populations 1.69795 1.06392 1.26078 1.59369 1.25493 0.96403 1.00810 1.03716 0.85268 0.77292 0.79474 0.78072 1.20518 1.21883 1.20677 1.19565 0.91327 0.85571 1.41414 0.91230 1.42428 1.05634 1.00607 1.89141 1.20244 0.92660 0.84089 0.96913 1.21382 1.02313 0.96279 0.94052 1.21101 0.97615 1.01093 0.91722 1.21304 0.95439 1.01392 0.80822 1.45896 1.21840 1.60004 1.08110 1.16727 0.84517 0.78345 0.81964 1.90832 1.19707 1.47689 1.85097 1.21181 0.87527 1.10163 0.95763 1.84322 1.30164 1.63791 1.28817 1.24618 1.01041 0.98291 0.79367 1.21354 0.95940 1.08437 0.99960 1.20536 0.98728 0.98964 0.91669 1.20869 0.92781 1.00642 0.98368 1.22755 0.87507 1.01321 0.89452 1.87955 1.21749 1.45252 1.76486 1.21327 0.91016 0.93929 0.87972 1.23011 0.97961 1.03102 0.96035 1.23070 0.99753 0.93291 1.02539 0.93976 0.79118 0.96412 0.96837 0.89223 0.92336 0.93176 0.90181 0.75015 0.72407 0.89643 0.89831 0.91990 0.86256 0.85130 0.89745 0.87410 0.90098 0.88441 0.86692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.98 13.06 21.65 0.28 -58.70 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.97 46.68 29.55 68.60 2.03 48.70 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 7 C -0.25 -14.04 9.99 84.03 0.84 -13.20 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.74 -37.63 5.30 -343.45 -1.82 -39.44 16 10 C 0.19 7.69 6.10 86.38 0.53 8.21 16 11 C -0.14 -4.34 1.52 -52.18 -0.08 -4.41 16 12 C -0.08 -2.22 5.24 30.59 0.16 -2.06 16 13 C 0.13 3.77 5.51 86.38 0.48 4.24 16 14 N -0.71 -19.15 5.55 -467.10 -2.59 -21.74 16 15 C 0.60 17.97 7.79 86.44 0.67 18.65 16 16 O -0.55 -19.47 15.63 -4.32 -0.07 -19.54 16 17 C -0.10 -2.51 7.11 23.77 0.17 -2.34 16 18 O -0.17 -3.75 10.44 -14.54 -0.15 -3.91 16 19 C 0.04 0.50 12.06 66.83 0.81 1.31 16 20 C -0.26 -4.45 6.04 -20.12 -0.12 -4.57 16 21 C -0.10 -2.30 6.02 -19.92 -0.12 -2.42 16 22 C -0.09 -1.96 5.69 30.01 0.17 -1.79 16 23 C 0.07 1.08 6.76 72.21 0.49 1.57 16 24 O -0.40 -7.06 10.70 -148.98 -1.59 -8.66 16 25 C 0.13 1.68 7.27 71.25 0.52 2.20 16 26 C -0.16 -4.54 9.90 30.59 0.30 -4.24 16 27 C -0.15 -3.61 9.57 30.59 0.29 -3.31 16 28 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.38 20.26 7.46 -92.71 -0.69 19.57 16 30 H 0.02 0.76 7.69 -2.39 -0.02 0.74 16 31 H 0.01 0.57 8.09 -2.39 -0.02 0.55 16 32 H 0.09 2.09 7.94 -2.39 -0.02 2.07 16 33 H 0.06 2.04 7.64 -2.38 -0.02 2.02 16 34 H 0.05 1.68 7.69 -2.39 -0.02 1.66 16 35 H 0.08 2.08 7.80 -2.39 -0.02 2.06 16 36 H 0.41 9.73 8.24 -92.71 -0.76 8.96 16 37 H 0.26 0.82 8.06 -2.91 -0.02 0.80 16 38 H 0.09 2.06 7.63 -2.39 -0.02 2.04 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.06 0.92 8.08 -2.39 -0.02 0.90 16 41 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 44 H 0.11 2.57 8.08 -2.39 -0.02 2.56 16 45 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.11 2.26 7.98 -2.39 -0.02 2.24 16 Total: -1.00 -74.45 390.99 1.20 -73.25 By element: Atomic # 1 Polarization: 36.34 SS G_CDS: -0.46 Total: 35.88 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.57 Total: -5.85 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -4.13 Total: -119.88 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.81 Total: -32.10 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -74.45 1.20 -73.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166404139.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.182 kcal (2) G-P(sol) polarization free energy of solvation -74.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.62 seconds