Wall clock time and date at job start Tue Mar 31 2020 23:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 11 11 C 1.53006 * 109.47127 * 60.00337 * 10 9 7 12 12 C 1.52997 * 109.47164 * 59.99836 * 11 10 9 13 13 N 1.46896 * 109.46908 * 180.02562 * 12 11 10 14 14 C 1.46896 * 111.00297 * 59.30182 * 13 12 11 15 15 C 1.53244 * 109.34546 * 172.74564 * 14 13 12 16 16 N 1.47087 * 108.51817 * 53.82721 * 15 14 13 17 17 C 1.34778 * 120.87607 * 128.79688 * 16 15 14 18 18 O 1.21278 * 119.99421 * 180.02562 * 17 16 15 19 19 C 1.50695 * 120.00335 * 0.02562 * 17 16 15 20 20 F 1.39900 * 109.47331 * 179.97438 * 19 17 16 21 21 F 1.39900 * 109.47395 * 300.00090 * 19 17 16 22 22 F 1.39907 * 109.46916 * 60.00129 * 19 17 16 23 23 C 1.47076 * 118.23812 * 308.81995 * 16 15 14 24 24 C 1.46901 * 111.00231 * 294.99979 * 13 12 11 25 25 C 1.53002 * 109.46978 * 299.99874 * 12 11 10 26 26 C 1.52996 * 109.46891 * 60.00410 * 25 12 11 27 27 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 29 29 H 1.08998 * 109.47533 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.47853 * 300.00179 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.09000 * 109.47050 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47375 * 59.99966 * 12 11 10 34 34 H 1.08998 * 109.49719 * 292.70691 * 14 13 12 35 35 H 1.08998 * 109.49436 * 52.78348 * 14 13 12 36 36 H 1.09000 * 109.62683 * 294.12122 * 15 14 13 37 37 H 1.08997 * 109.79016 * 173.63665 * 15 14 13 38 38 H 1.09005 * 109.62411 * 291.47507 * 23 16 15 39 39 H 1.08994 * 109.63185 * 170.89712 * 23 16 15 40 40 H 1.09002 * 109.48985 * 307.21111 * 24 13 12 41 41 H 1.08990 * 109.49283 * 67.26327 * 24 13 12 42 42 H 1.08992 * 109.47056 * 300.00064 * 25 12 11 43 43 H 1.09004 * 109.47006 * 180.02562 * 25 12 11 44 44 H 1.09004 * 109.47368 * 179.97438 * 26 25 12 45 45 H 1.09001 * 109.47372 * 59.99964 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.3719 -2.5804 -1.2489 11 6 1.2519 -2.4996 -2.4980 12 6 2.2461 -3.6626 -2.4974 13 7 3.0914 -3.5846 -3.6963 14 6 3.8301 -2.3156 -3.7381 15 6 4.8301 -2.3483 -4.8988 16 7 4.1034 -2.6859 -6.1322 17 6 4.2322 -1.9291 -7.2400 18 8 3.6250 -2.2219 -8.2482 19 6 5.1304 -0.7192 -7.2258 20 9 5.1004 -0.1014 -8.4807 21 9 4.6853 0.1808 -6.2516 22 9 6.4401 -1.1142 -6.9323 23 6 3.2321 -3.8708 -6.1244 24 6 2.2950 -3.7780 -4.9155 25 6 3.1254 -3.5812 -1.2479 26 6 2.2453 -3.6620 0.0010 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 0.8903 29 1 -0.1728 -3.5245 -1.2492 30 1 -0.3365 -1.7520 -1.2494 31 1 1.7969 -1.5557 -2.4980 32 1 0.6256 -2.5580 -3.3881 33 1 1.7011 -4.6066 -2.4974 34 1 3.1308 -1.4923 -3.8837 35 1 4.3665 -2.1759 -2.7996 36 1 5.5920 -3.1033 -4.7044 37 1 5.3017 -1.3717 -5.0072 38 1 3.8404 -4.7720 -6.0479 39 1 2.6444 -3.8992 -7.0419 40 1 1.7183 -4.6990 -4.8308 41 1 1.6167 -2.9347 -5.0444 42 1 3.6703 -2.6373 -1.2480 43 1 3.8340 -4.4095 -1.2477 44 1 2.8717 -3.6046 0.8913 45 1 1.7003 -4.6060 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:41 Heat of formation + Delta-G solvation = -177.161839 kcal Electronic energy + Delta-G solvation = -31308.773402 eV Core-core repulsion = 26718.206525 eV Total energy + Delta-G solvation = -4590.566877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -50.62125 -48.08571 -48.08066 -40.59030 -39.07968 -36.99507 -34.56205 -32.24202 -31.51044 -29.81687 -29.41483 -28.07247 -26.06445 -24.58988 -24.01868 -22.48550 -21.59493 -20.80005 -19.88989 -19.12494 -18.98435 -18.68893 -18.00189 -16.78344 -15.86311 -15.68860 -15.51193 -15.22697 -15.01787 -14.85061 -14.79440 -14.64096 -14.47262 -14.44258 -14.16043 -14.09005 -13.88510 -13.52363 -13.34892 -13.11928 -12.83015 -12.51275 -12.00147 -11.78721 -11.64262 -11.38385 -11.29311 -11.07512 -11.00475 -10.91222 -10.64847 -10.54638 -10.23676 -10.04050 -9.79754 -9.28800 -9.22032 -8.99953 -8.71338 -8.34747 -7.92503 -6.00781 -4.05683 1.50738 1.63100 2.70203 3.23741 3.26659 3.33151 3.34898 3.70275 3.86030 3.99483 4.39937 4.60257 4.80549 4.91794 5.11153 5.22279 5.24282 5.29593 5.43887 5.50190 5.65145 5.72993 5.84808 5.95435 5.96668 6.03256 6.24880 6.31512 6.40631 6.45138 6.59675 6.65392 6.69179 6.80054 6.97088 7.05411 7.16803 7.21678 7.33861 7.37838 7.51289 7.70096 7.89940 8.11431 8.44252 8.96806 9.57827 11.04864 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013304 B = 0.004126 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.124975 B = 6785.422892 C = 7992.226364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.502 4.502 8 H 0.054 0.946 9 C 0.044 3.956 10 C -0.104 4.104 11 C -0.130 4.130 12 C 0.091 3.909 13 N -0.533 5.533 14 C 0.035 3.965 15 C 0.096 3.904 16 N -0.580 5.580 17 C 0.483 3.517 18 O -0.488 6.488 19 C 0.450 3.550 20 F -0.155 7.155 21 F -0.163 7.163 22 F -0.168 7.168 23 C 0.118 3.882 24 C 0.037 3.963 25 C -0.097 4.097 26 C -0.106 4.106 27 H 0.259 0.741 28 H 0.024 0.976 29 H 0.013 0.987 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.048 0.952 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.028 -6.420 -11.764 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.142 4.142 11 C -0.169 4.169 12 C -0.016 4.016 13 N -0.257 5.257 14 C -0.093 4.093 15 C -0.027 4.027 16 N -0.313 5.313 17 C 0.262 3.738 18 O -0.362 6.362 19 C 0.392 3.608 20 F -0.136 7.136 21 F -0.144 7.144 22 F -0.149 7.149 23 C -0.003 4.003 24 C -0.092 4.092 25 C -0.135 4.135 26 C -0.144 4.144 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 8.906 -6.825 -12.283 16.636 hybrid contribution 0.032 1.999 0.006 1.999 sum 8.938 -4.826 -12.278 15.935 Atomic orbital electron populations 1.69850 1.05831 1.26315 1.50933 1.24930 0.94727 0.98736 0.95471 0.86841 0.79786 0.83885 0.78605 1.20338 1.21425 1.20322 1.21083 0.92576 0.90409 1.49919 0.92817 1.18683 0.92703 0.92121 0.93973 1.21449 0.98651 0.99327 0.94790 1.22005 0.97822 0.99151 0.97934 1.21770 0.92876 0.98568 0.88363 1.62302 1.28225 1.32847 1.02285 1.22521 0.96545 0.91950 0.98312 1.22372 0.95305 1.02279 0.82703 1.48222 1.44924 1.27116 1.10991 1.20242 0.83952 0.84191 0.85389 1.90843 1.44896 1.69070 1.31384 1.20266 0.80207 0.85382 0.74907 1.93257 1.96221 1.83590 1.40534 1.93282 1.88916 1.69815 1.62414 1.93256 1.38076 1.90585 1.92993 1.21999 0.92638 0.85980 0.99729 1.22464 0.94791 1.02359 0.89544 1.21475 0.97354 1.01178 0.93504 1.21542 0.98266 0.98610 0.96016 0.93087 0.95837 0.96824 0.89237 0.90762 0.95132 0.91059 0.93062 0.87890 0.89038 0.89466 0.89564 0.88418 0.89127 0.93609 0.91091 0.93643 0.93367 0.94787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.88 20.43 29.54 -169.99 -5.02 15.40 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.50 -12.53 6.61 -34.44 -0.23 -12.76 16 8 H 0.05 1.32 6.71 -52.49 -0.35 0.97 16 9 C 0.04 1.00 2.59 -91.77 -0.24 0.77 16 10 C -0.10 -2.27 5.24 -26.73 -0.14 -2.41 16 11 C -0.13 -2.48 4.30 -26.73 -0.11 -2.59 16 12 C 0.09 1.45 2.23 -67.72 -0.15 1.30 16 13 N -0.53 -7.16 4.61 -226.35 -1.04 -8.21 16 14 C 0.04 0.47 4.76 -3.70 -0.02 0.46 16 15 C 0.10 1.04 5.99 -3.60 -0.02 1.02 16 16 N -0.58 -6.75 3.01 -172.46 -0.52 -7.27 16 17 C 0.48 6.20 7.28 -10.99 -0.08 6.12 16 18 O -0.49 -7.41 16.07 5.56 0.09 -7.32 16 19 C 0.45 5.35 2.79 36.00 0.10 5.45 16 20 F -0.15 -1.95 16.92 2.25 0.04 -1.91 16 21 F -0.16 -2.02 15.63 2.25 0.04 -1.98 16 22 F -0.17 -1.79 16.01 2.25 0.04 -1.76 16 23 C 0.12 1.25 6.60 -3.60 -0.02 1.22 16 24 C 0.04 0.45 5.14 -3.70 -0.02 0.43 16 25 C -0.10 -1.64 4.78 -26.73 -0.13 -1.77 16 26 C -0.11 -2.02 5.41 -26.73 -0.14 -2.17 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 31 H 0.07 1.59 5.63 -51.93 -0.29 1.30 16 32 H 0.03 0.55 6.69 -51.93 -0.35 0.20 16 33 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 34 H 0.05 0.80 6.71 -51.93 -0.35 0.45 16 35 H 0.10 1.43 5.97 -51.93 -0.31 1.12 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.91 4.74 -51.93 -0.25 0.66 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.04 7.06 -51.93 -0.37 0.67 16 40 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 41 H 0.05 0.63 6.81 -51.93 -0.35 0.28 16 42 H 0.07 1.28 4.74 -51.93 -0.25 1.04 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -27.12 345.98 -7.95 -35.08 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.11 Total: -0.08 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.30 Total: -3.39 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.94 Total: -39.24 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.09 Total: -7.32 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.11 Total: -5.65 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.12 -7.95 -35.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.085 kcal (2) G-P(sol) polarization free energy of solvation -27.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds