Wall clock time and date at job start Tue Mar 31 2020 23:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00129 * 2 1 4 4 H 1.48496 * 109.47319 * 239.99985 * 3 2 1 5 5 H 1.48503 * 109.46734 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47266 * 119.99799 * 3 2 1 7 7 C 1.37878 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00306 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47078 * 59.99463 * 9 7 2 11 11 C 1.53006 * 109.47127 * 60.00337 * 10 9 7 12 12 C 1.52997 * 109.47164 * 59.99836 * 11 10 9 13 13 N 1.46896 * 109.46908 * 180.02562 * 12 11 10 14 14 C 1.46896 * 111.00297 * 59.30182 * 13 12 11 15 15 C 1.53244 * 109.34546 * 172.74564 * 14 13 12 16 16 N 1.47087 * 108.51817 * 53.82721 * 15 14 13 17 17 C 1.34778 * 120.87607 * 128.79688 * 16 15 14 18 18 O 1.21278 * 119.99421 * 180.02562 * 17 16 15 19 19 C 1.50695 * 120.00335 * 0.02562 * 17 16 15 20 20 F 1.39900 * 109.47331 * 179.97438 * 19 17 16 21 21 F 1.39900 * 109.47395 * 300.00090 * 19 17 16 22 22 F 1.39907 * 109.46916 * 60.00129 * 19 17 16 23 23 C 1.47076 * 118.23812 * 308.81995 * 16 15 14 24 24 C 1.46901 * 111.00231 * 294.99979 * 13 12 11 25 25 C 1.53002 * 109.46978 * 299.99874 * 12 11 10 26 26 C 1.52996 * 109.46891 * 60.00410 * 25 12 11 27 27 H 0.96999 * 120.00073 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 29 29 H 1.08998 * 109.47533 * 179.97438 * 10 9 7 30 30 H 1.08996 * 109.47853 * 300.00179 * 10 9 7 31 31 H 1.09001 * 109.47002 * 299.99574 * 11 10 9 32 32 H 1.09000 * 109.47050 * 179.97438 * 11 10 9 33 33 H 1.09001 * 109.47375 * 59.99966 * 12 11 10 34 34 H 1.08998 * 109.49719 * 292.70691 * 14 13 12 35 35 H 1.08998 * 109.49436 * 52.78348 * 14 13 12 36 36 H 1.09000 * 109.62683 * 294.12122 * 15 14 13 37 37 H 1.08997 * 109.79016 * 173.63665 * 15 14 13 38 38 H 1.09005 * 109.62411 * 291.47507 * 23 16 15 39 39 H 1.08994 * 109.63185 * 170.89712 * 23 16 15 40 40 H 1.09002 * 109.48985 * 307.21111 * 24 13 12 41 41 H 1.08990 * 109.49283 * 67.26327 * 24 13 12 42 42 H 1.08992 * 109.47056 * 300.00064 * 25 12 11 43 43 H 1.09004 * 109.47006 * 180.02562 * 25 12 11 44 44 H 1.09004 * 109.47368 * 179.97438 * 26 25 12 45 45 H 1.09001 * 109.47372 * 59.99964 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.3719 -2.5804 -1.2489 11 6 1.2519 -2.4996 -2.4980 12 6 2.2461 -3.6626 -2.4974 13 7 3.0914 -3.5846 -3.6963 14 6 3.8301 -2.3156 -3.7381 15 6 4.8301 -2.3483 -4.8988 16 7 4.1034 -2.6859 -6.1322 17 6 4.2322 -1.9291 -7.2400 18 8 3.6250 -2.2219 -8.2482 19 6 5.1304 -0.7192 -7.2258 20 9 5.1004 -0.1014 -8.4807 21 9 4.6853 0.1808 -6.2516 22 9 6.4401 -1.1142 -6.9323 23 6 3.2321 -3.8708 -6.1244 24 6 2.2950 -3.7780 -4.9155 25 6 3.1254 -3.5812 -1.2479 26 6 2.2453 -3.6620 0.0010 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5567 0.8903 29 1 -0.1728 -3.5245 -1.2492 30 1 -0.3365 -1.7520 -1.2494 31 1 1.7969 -1.5557 -2.4980 32 1 0.6256 -2.5580 -3.3881 33 1 1.7011 -4.6066 -2.4974 34 1 3.1308 -1.4923 -3.8837 35 1 4.3665 -2.1759 -2.7996 36 1 5.5920 -3.1033 -4.7044 37 1 5.3017 -1.3717 -5.0072 38 1 3.8404 -4.7720 -6.0479 39 1 2.6444 -3.8992 -7.0419 40 1 1.7183 -4.6990 -4.8308 41 1 1.6167 -2.9347 -5.0444 42 1 3.6703 -2.6373 -1.2480 43 1 3.8340 -4.4095 -1.2477 44 1 2.8717 -3.6046 0.8913 45 1 1.7003 -4.6060 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331957.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:30 Heat of formation + Delta-G solvation = -192.713484 kcal Electronic energy + Delta-G solvation = -31309.447772 eV Core-core repulsion = 26718.206525 eV Total energy + Delta-G solvation = -4591.241247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -51.56811 -49.05620 -49.00292 -41.62158 -40.34330 -38.29416 -35.87195 -34.00042 -32.52152 -31.30042 -30.82913 -29.24571 -27.38553 -26.26158 -25.04251 -23.67161 -23.00248 -22.08223 -21.06261 -20.32735 -20.00821 -19.90180 -19.09100 -17.80194 -17.68193 -16.80973 -16.69080 -16.51374 -16.23130 -16.03860 -15.83809 -15.70549 -15.59051 -15.39011 -15.32036 -15.10735 -15.05862 -14.94165 -14.60597 -14.45230 -14.22274 -13.82081 -13.30679 -13.20840 -12.91673 -12.85769 -12.66253 -12.56508 -12.47861 -12.38314 -12.29070 -11.95549 -11.55399 -11.52207 -11.45493 -10.91045 -10.68939 -10.51973 -10.30287 -10.18112 -9.16753 -8.02078 -6.11583 0.50918 0.68260 1.40202 1.42110 1.47072 1.76457 2.28706 2.45033 2.75103 2.87798 2.93658 3.26780 3.65581 3.84633 3.93725 4.12289 4.17322 4.22755 4.33761 4.39471 4.48710 4.59461 4.68534 4.76195 4.77885 4.87866 4.90157 4.92704 4.99022 5.03883 5.07197 5.14145 5.31034 5.46140 5.57791 5.62461 5.66616 5.69133 5.74842 5.94042 6.14133 6.16350 6.20426 6.25735 6.48054 6.99683 7.54516 9.02127 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013304 B = 0.004126 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.124975 B = 6785.422892 C = 7992.226364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.932 3.068 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.498 4.498 8 H 0.057 0.943 9 C 0.038 3.962 10 C -0.100 4.100 11 C -0.119 4.119 12 C 0.101 3.899 13 N -0.520 5.520 14 C 0.035 3.965 15 C 0.101 3.899 16 N -0.577 5.577 17 C 0.482 3.518 18 O -0.515 6.515 19 C 0.457 3.543 20 F -0.160 7.160 21 F -0.166 7.166 22 F -0.158 7.158 23 C 0.121 3.879 24 C 0.037 3.963 25 C -0.090 4.090 26 C -0.101 4.101 27 H 0.254 0.746 28 H -0.016 1.016 29 H 0.026 0.974 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.101 0.899 36 H 0.117 0.883 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.024 0.976 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.118 -8.017 -12.646 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.183 4.183 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.197 1.197 7 C -0.537 4.537 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.138 4.138 11 C -0.157 4.157 12 C -0.006 4.006 13 N -0.242 5.242 14 C -0.093 4.093 15 C -0.020 4.020 16 N -0.309 5.309 17 C 0.262 3.738 18 O -0.391 6.391 19 C 0.399 3.601 20 F -0.141 7.141 21 F -0.148 7.148 22 F -0.139 7.139 23 C 0.000 4.000 24 C -0.091 4.091 25 C -0.128 4.128 26 C -0.139 4.139 27 H 0.063 0.937 28 H 0.002 0.998 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.119 0.881 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.066 0.934 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.022 -8.432 -13.152 19.119 hybrid contribution -0.659 2.480 0.332 2.588 sum 10.363 -5.951 -12.819 17.526 Atomic orbital electron populations 1.70012 1.07120 1.26456 1.52556 1.25587 0.95306 1.01657 0.95799 0.86007 0.78664 0.80500 0.78930 1.19455 1.22100 1.19736 1.21381 0.92780 0.91252 1.48256 0.92495 1.18690 0.93237 0.93356 0.92768 1.21301 0.98362 0.98307 0.95871 1.21848 0.97909 0.99513 0.96475 1.21607 0.92271 0.97411 0.89358 1.62336 1.27489 1.32471 1.01952 1.22508 0.96487 0.90975 0.99375 1.22404 0.94821 1.03594 0.81221 1.48347 1.44681 1.27052 1.10801 1.20343 0.83790 0.84284 0.85345 1.90832 1.46088 1.69832 1.32388 1.20092 0.80456 0.84957 0.74640 1.93248 1.96271 1.83670 1.40903 1.93279 1.89044 1.69931 1.62532 1.93277 1.37284 1.90443 1.92882 1.22079 0.92638 0.86342 0.98898 1.22547 0.94830 1.02420 0.89313 1.21389 0.97252 1.01593 0.92540 1.21443 0.97685 0.97367 0.97403 0.93659 0.99762 0.95518 0.93199 0.93510 0.94630 0.89666 0.95883 0.88135 0.86464 0.88967 0.87105 0.88359 0.87166 0.95781 0.92480 0.90807 0.93433 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.34 11.32 21.45 0.24 -52.10 16 2 C 0.01 0.75 5.30 84.65 0.45 1.20 16 3 Si 0.93 42.40 29.54 68.60 2.03 44.43 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 7 C -0.50 -25.19 6.61 25.60 0.17 -25.02 16 8 H 0.06 2.79 6.71 -2.91 -0.02 2.77 16 9 C 0.04 1.77 2.59 -11.54 -0.03 1.74 16 10 C -0.10 -4.44 5.24 30.60 0.16 -4.28 16 11 C -0.12 -4.46 4.30 30.60 0.13 -4.33 16 12 C 0.10 2.99 2.23 44.92 0.10 3.09 16 13 N -0.52 -12.51 4.61 -870.04 -4.01 -16.53 16 14 C 0.04 0.88 4.76 86.39 0.41 1.29 16 15 C 0.10 1.93 5.99 86.35 0.52 2.45 16 16 N -0.58 -12.05 3.01 -817.93 -2.46 -14.51 16 17 C 0.48 11.61 7.28 87.66 0.64 12.25 16 18 O -0.52 -15.05 16.07 -3.02 -0.05 -15.10 16 19 C 0.46 10.15 2.79 71.23 0.20 10.35 16 20 F -0.16 -3.85 16.92 44.97 0.76 -3.09 16 21 F -0.17 -3.92 15.63 44.97 0.70 -3.22 16 22 F -0.16 -3.01 16.01 44.97 0.72 -2.29 16 23 C 0.12 2.20 6.60 86.35 0.57 2.77 16 24 C 0.04 0.80 5.14 86.38 0.44 1.24 16 25 C -0.09 -2.80 4.78 30.59 0.15 -2.65 16 26 C -0.10 -3.68 5.41 30.59 0.17 -3.52 16 27 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 28 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 2.62 6.07 -2.39 -0.01 2.61 16 31 H 0.05 2.02 5.63 -2.39 -0.01 2.01 16 32 H 0.04 1.28 6.69 -2.39 -0.02 1.26 16 33 H 0.09 2.36 8.07 -2.39 -0.02 2.34 16 34 H 0.02 0.71 6.71 -2.39 -0.02 0.70 16 35 H 0.10 2.59 5.97 -2.39 -0.01 2.58 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.70 4.74 -2.39 -0.01 1.69 16 38 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.10 1.85 7.06 -2.39 -0.02 1.84 16 40 H 0.11 1.96 8.05 -2.39 -0.02 1.95 16 41 H 0.02 0.63 6.81 -2.39 -0.02 0.61 16 42 H 0.06 1.95 4.74 -2.39 -0.01 1.94 16 43 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -59.89 345.98 3.02 -56.87 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.03 Total: 8.96 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 4.07 Total: -3.42 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -6.23 Total: -83.14 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.05 Total: -15.10 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 2.18 Total: -8.61 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -59.89 3.02 -56.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331957.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.844 kcal (2) G-P(sol) polarization free energy of solvation -59.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.48 seconds