Wall clock time and date at job start Tue Mar 31 2020 23:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99753 * 2 1 4 4 H 1.48498 * 109.47346 * 239.99934 * 3 2 1 5 5 H 1.48501 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47078 * 120.00448 * 3 2 1 7 7 C 1.37874 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00495 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99639 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.46892 * 111.00189 * 170.00092 * 10 9 7 12 12 C 1.53239 * 109.34019 * 187.25122 * 11 10 9 13 13 N 1.47081 * 108.52020 * 306.16778 * 12 11 10 14 14 C 1.34782 * 120.88157 * 231.18763 * 13 12 11 15 15 O 1.21281 * 119.99952 * 5.03727 * 14 13 12 16 16 C 1.50696 * 120.00103 * 185.03574 * 14 13 12 17 17 H 1.09001 * 109.46795 * 48.15786 * 16 14 13 18 18 O 1.42900 * 109.47104 * 168.15530 * 16 14 13 19 19 C 1.52997 * 109.47358 * 288.15772 * 16 14 13 20 20 C 1.50703 * 109.47020 * 177.15623 * 19 16 14 21 21 C 1.38261 * 119.94580 * 269.72322 * 20 19 16 22 22 C 1.38145 * 120.05655 * 179.72699 * 21 20 19 23 23 C 1.38734 * 119.94217 * 0.57280 * 22 21 20 24 24 O 1.35895 * 120.05825 * 179.68489 * 23 22 21 25 25 C 1.38735 * 119.88757 * 359.70168 * 23 22 21 26 26 C 1.38144 * 119.94332 * 0.02562 * 25 23 22 27 27 C 1.47078 * 118.23842 * 51.45613 * 13 12 11 28 28 C 1.46908 * 110.99353 * 294.29604 * 10 9 7 29 29 H 0.97004 * 120.00070 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47555 * 59.99617 * 9 7 2 31 31 H 1.09002 * 109.46886 * 299.99602 * 9 7 2 32 32 H 1.09001 * 109.49864 * 67.29217 * 11 10 9 33 33 H 1.09002 * 109.51271 * 307.22307 * 11 10 9 34 34 H 1.09005 * 109.62785 * 186.46100 * 12 11 10 35 35 H 1.09001 * 109.63085 * 65.87627 * 12 11 10 36 36 H 0.96702 * 113.99943 * 60.00715 * 18 16 14 37 37 H 1.09005 * 109.47037 * 57.15972 * 19 16 14 38 38 H 1.08996 * 109.47283 * 297.15906 * 19 16 14 39 39 H 1.08002 * 119.97163 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.02958 * 180.25714 * 22 21 20 41 41 H 0.96702 * 113.99684 * 270.02221 * 24 23 22 42 42 H 1.07999 * 120.02588 * 179.97438 * 25 23 22 43 43 H 1.08005 * 119.97257 * 180.02562 * 26 25 23 44 44 H 1.08994 * 109.62580 * 68.25233 * 27 13 12 45 45 H 1.09003 * 109.62957 * 188.83495 * 27 13 12 46 46 H 1.08998 * 109.49509 * 292.70773 * 28 10 9 47 47 H 1.08999 * 109.48889 * 52.78967 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8934 0.2376 12 6 2.5638 -6.0031 0.4103 13 7 3.4616 -5.9861 -0.7546 14 6 3.7118 -7.1122 -1.4516 15 8 3.1247 -8.1377 -1.1782 16 6 4.7211 -7.0972 -2.5706 17 1 5.6355 -6.6125 -2.2285 18 8 5.0127 -8.4388 -2.9670 19 6 4.1500 -6.3260 -3.7622 20 6 5.1853 -6.2510 -4.8547 21 6 6.0709 -5.1900 -4.8947 22 6 7.0245 -5.1218 -5.8920 23 6 7.0854 -6.1131 -6.8607 24 8 8.0183 -6.0451 -7.8465 25 6 6.1919 -7.1737 -6.8216 26 6 5.2439 -7.2401 -5.8190 27 6 4.0837 -4.7089 -1.1352 28 6 2.9766 -3.6490 -1.2506 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6248 -2.5570 0.8897 32 1 0.8796 -5.1263 -0.6122 33 1 0.9158 -4.8193 1.1410 34 1 2.0632 -6.9694 0.4727 35 1 3.1396 -5.8264 1.3188 36 1 4.2431 -8.9315 -3.2836 37 1 3.8807 -5.3178 -3.4471 38 1 3.2638 -6.8388 -4.1359 39 1 6.0197 -4.4158 -4.1434 40 1 7.7187 -4.2950 -5.9204 41 1 7.7238 -5.5683 -8.6345 42 1 6.2371 -7.9464 -7.5748 43 1 4.5484 -8.0659 -5.7879 44 1 4.8026 -4.4102 -0.3724 45 1 4.5884 -4.8190 -2.0950 46 1 2.3146 -3.8992 -2.0797 47 1 3.4270 -2.6721 -1.4263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183897056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:43 Heat of formation + Delta-G solvation = -90.219219 kcal Electronic energy + Delta-G solvation = -29068.594228 eV Core-core repulsion = 25023.654206 eV Total energy + Delta-G solvation = -4044.940022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 20.30 seconds Orbital eigenvalues (eV) -40.67587 -39.84241 -38.02988 -37.35379 -36.23571 -34.62381 -32.79361 -32.28996 -31.25246 -30.88941 -28.94645 -27.96734 -25.77702 -24.36020 -23.37967 -23.05923 -22.08914 -21.52059 -20.81566 -19.04285 -18.68739 -17.75928 -16.99365 -16.45052 -16.21657 -15.97069 -15.59238 -15.49966 -15.00711 -14.98564 -14.72459 -14.51894 -14.17171 -13.86559 -13.77407 -13.72232 -13.63657 -12.95038 -12.64681 -12.53821 -12.37514 -11.98787 -11.96690 -11.82130 -11.74777 -11.34920 -11.14866 -11.10129 -10.89268 -10.83824 -10.72531 -10.63162 -10.60616 -9.95642 -9.56222 -9.36463 -9.23163 -8.71502 -8.59608 -8.51056 -7.42241 -6.12148 -4.14809 0.93017 1.11102 2.48449 2.94191 3.26273 3.31741 3.33465 3.34980 3.92926 4.04625 4.28488 4.32931 4.49539 4.60594 4.67029 4.73781 4.77187 4.81302 5.07058 5.14918 5.20772 5.23126 5.27808 5.35699 5.46329 5.49910 5.54061 5.62826 5.69163 5.75780 5.77223 5.94378 6.02515 6.16630 6.19675 6.32303 6.34177 6.35243 6.54303 6.55562 7.13692 7.19316 7.26013 7.35621 7.43809 7.66677 7.93494 8.03959 8.07479 8.39429 8.91969 9.50083 10.98542 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003084 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.700070 B = 9076.257664 C =11255.396721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.041 3.959 12 C 0.116 3.884 13 N -0.602 5.602 14 C 0.486 3.514 15 O -0.544 6.544 16 C 0.101 3.899 17 H 0.123 0.877 18 O -0.533 6.533 19 C -0.118 4.118 20 C -0.082 4.082 21 C -0.099 4.099 22 C -0.142 4.142 23 C 0.099 3.901 24 O -0.501 6.501 25 C -0.145 4.145 26 C -0.086 4.086 27 C 0.097 3.903 28 C 0.050 3.950 29 H 0.263 0.737 30 H -0.009 1.009 31 H 0.032 0.968 32 H 0.027 0.973 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.381 0.619 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.389 0.611 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.026 0.974 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.866 -12.412 -12.303 20.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.551 4.551 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.088 4.088 12 C -0.006 4.006 13 N -0.336 5.336 14 C 0.273 3.727 15 O -0.422 6.422 16 C 0.039 3.961 17 H 0.141 0.859 18 O -0.338 6.338 19 C -0.156 4.156 20 C -0.082 4.082 21 C -0.117 4.117 22 C -0.161 4.161 23 C 0.055 3.945 24 O -0.311 6.311 25 C -0.163 4.163 26 C -0.104 4.104 27 C -0.025 4.025 28 C -0.079 4.079 29 H 0.073 0.927 30 H 0.009 0.991 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.117 0.883 38 H 0.103 0.897 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.245 0.755 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.044 0.956 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.660 -12.910 -11.201 20.690 hybrid contribution -1.050 1.127 -1.108 1.897 sum 10.610 -11.783 -12.309 20.073 Atomic orbital electron populations 1.69941 1.06117 1.27054 1.50503 1.24990 0.94856 0.99369 0.95279 0.86557 0.79449 0.82703 0.78673 1.20236 1.21341 1.20106 1.21082 0.93408 0.89844 1.50730 0.91834 1.19724 0.89957 0.87092 0.96271 1.62082 1.28169 1.02762 1.33015 1.22400 0.94919 0.90464 1.01023 1.21797 0.91802 0.99602 0.87435 1.48269 1.46564 1.08478 1.30322 1.21491 0.83740 0.83421 0.84041 1.90680 1.50968 1.31730 1.68849 1.21811 0.98099 0.85017 0.91220 0.85918 1.86611 1.38029 1.23351 1.85795 1.21463 0.97422 1.02995 0.93696 1.19622 0.97216 0.95190 0.96169 1.20997 0.94451 0.97918 0.98303 1.21406 0.99443 0.99043 0.96178 1.18502 0.90102 0.94763 0.91182 1.84827 1.39362 1.79081 1.27878 1.21392 0.95398 0.99129 1.00383 1.20886 0.98047 0.97915 0.93562 1.22368 0.96603 0.82766 1.00801 1.22413 0.94978 0.98925 0.91563 0.92750 0.99084 0.95001 0.95510 0.89980 0.89376 0.90757 0.77067 0.88251 0.89734 0.85208 0.85314 0.75539 0.85531 0.85687 0.90211 0.89780 0.95589 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.51 -13.45 8.41 -34.44 -0.29 -13.74 16 8 H 0.06 1.62 7.13 -52.49 -0.37 1.25 16 9 C 0.19 4.75 4.72 -4.97 -0.02 4.72 16 10 N -0.54 -10.49 4.62 -235.46 -1.09 -11.57 16 11 C 0.04 0.70 5.62 -3.71 -0.02 0.68 16 12 C 0.12 1.72 6.61 -3.60 -0.02 1.69 16 13 N -0.60 -8.34 3.00 -172.18 -0.52 -8.86 16 14 C 0.49 6.71 7.05 -10.99 -0.08 6.63 16 15 O -0.54 -9.20 15.76 -14.07 -0.22 -9.42 16 16 C 0.10 1.09 2.55 -27.89 -0.07 1.02 16 17 H 0.12 1.23 7.59 -51.93 -0.39 0.84 16 18 O -0.53 -6.07 12.44 -54.86 -0.68 -6.76 16 19 C -0.12 -1.10 4.62 -27.88 -0.13 -1.23 16 20 C -0.08 -0.77 4.94 -104.60 -0.52 -1.28 16 21 C -0.10 -0.90 9.69 -39.61 -0.38 -1.28 16 22 C -0.14 -1.31 9.99 -39.43 -0.39 -1.70 16 23 C 0.10 0.93 6.70 -39.21 -0.26 0.67 16 24 O -0.50 -4.22 13.50 -19.41 -0.26 -4.49 16 25 C -0.14 -1.31 9.99 -39.43 -0.39 -1.70 16 26 C -0.09 -0.78 9.33 -39.61 -0.37 -1.14 16 27 C 0.10 1.23 5.83 -3.36 -0.02 1.21 16 28 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 31 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.37 7.99 -51.93 -0.41 0.95 16 34 H 0.09 1.31 7.04 -51.93 -0.37 0.94 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.38 3.50 8.72 45.56 0.40 3.90 16 37 H 0.10 0.93 5.53 -51.93 -0.29 0.64 16 38 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 41 H 0.39 1.39 9.06 45.56 0.41 1.80 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.08 0.82 4.18 -51.93 -0.22 0.60 16 46 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 1.74 6.67 -51.93 -0.35 1.40 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -33.26 381.65 -9.76 -43.02 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.36 Total: 4.88 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -3.09 Total: -3.19 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.87 Total: -45.38 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.17 Total: -20.66 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.26 -9.76 -43.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183897056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.197 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 20.30 seconds