Wall clock time and date at job start Tue Mar 31 2020 23:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99753 * 2 1 4 4 H 1.48498 * 109.47346 * 239.99934 * 3 2 1 5 5 H 1.48501 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47078 * 120.00448 * 3 2 1 7 7 C 1.37874 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00495 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99639 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47165 * 180.02562 * 9 7 2 11 11 C 1.46892 * 111.00189 * 170.00092 * 10 9 7 12 12 C 1.53239 * 109.34019 * 187.25122 * 11 10 9 13 13 N 1.47081 * 108.52020 * 306.16778 * 12 11 10 14 14 C 1.34782 * 120.88157 * 231.18763 * 13 12 11 15 15 O 1.21281 * 119.99952 * 5.03727 * 14 13 12 16 16 C 1.50696 * 120.00103 * 185.03574 * 14 13 12 17 17 H 1.09001 * 109.46795 * 48.15786 * 16 14 13 18 18 O 1.42900 * 109.47104 * 168.15530 * 16 14 13 19 19 C 1.52997 * 109.47358 * 288.15772 * 16 14 13 20 20 C 1.50703 * 109.47020 * 177.15623 * 19 16 14 21 21 C 1.38261 * 119.94580 * 269.72322 * 20 19 16 22 22 C 1.38145 * 120.05655 * 179.72699 * 21 20 19 23 23 C 1.38734 * 119.94217 * 0.57280 * 22 21 20 24 24 O 1.35895 * 120.05825 * 179.68489 * 23 22 21 25 25 C 1.38735 * 119.88757 * 359.70168 * 23 22 21 26 26 C 1.38144 * 119.94332 * 0.02562 * 25 23 22 27 27 C 1.47078 * 118.23842 * 51.45613 * 13 12 11 28 28 C 1.46908 * 110.99353 * 294.29604 * 10 9 7 29 29 H 0.97004 * 120.00070 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47555 * 59.99617 * 9 7 2 31 31 H 1.09002 * 109.46886 * 299.99602 * 9 7 2 32 32 H 1.09001 * 109.49864 * 67.29217 * 11 10 9 33 33 H 1.09002 * 109.51271 * 307.22307 * 11 10 9 34 34 H 1.09005 * 109.62785 * 186.46100 * 12 11 10 35 35 H 1.09001 * 109.63085 * 65.87627 * 12 11 10 36 36 H 0.96702 * 113.99943 * 60.00715 * 18 16 14 37 37 H 1.09005 * 109.47037 * 57.15972 * 19 16 14 38 38 H 1.08996 * 109.47283 * 297.15906 * 19 16 14 39 39 H 1.08002 * 119.97163 * 359.97438 * 21 20 19 40 40 H 1.08004 * 120.02958 * 180.25714 * 22 21 20 41 41 H 0.96702 * 113.99684 * 270.02221 * 24 23 22 42 42 H 1.07999 * 120.02588 * 179.97438 * 25 23 22 43 43 H 1.08005 * 119.97257 * 180.02562 * 26 25 23 44 44 H 1.08994 * 109.62580 * 68.25233 * 27 13 12 45 45 H 1.09003 * 109.62957 * 188.83495 * 27 13 12 46 46 H 1.08998 * 109.49509 * 292.70773 * 28 10 9 47 47 H 1.08999 * 109.48889 * 52.78967 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5212 -4.8934 0.2376 12 6 2.5638 -6.0031 0.4103 13 7 3.4616 -5.9861 -0.7546 14 6 3.7118 -7.1122 -1.4516 15 8 3.1247 -8.1377 -1.1782 16 6 4.7211 -7.0972 -2.5706 17 1 5.6355 -6.6125 -2.2285 18 8 5.0127 -8.4388 -2.9670 19 6 4.1500 -6.3260 -3.7622 20 6 5.1853 -6.2510 -4.8547 21 6 6.0709 -5.1900 -4.8947 22 6 7.0245 -5.1218 -5.8920 23 6 7.0854 -6.1131 -6.8607 24 8 8.0183 -6.0451 -7.8465 25 6 6.1919 -7.1737 -6.8216 26 6 5.2439 -7.2401 -5.8190 27 6 4.0837 -4.7089 -1.1352 28 6 2.9766 -3.6490 -1.2506 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6248 -2.5570 0.8897 32 1 0.8796 -5.1263 -0.6122 33 1 0.9158 -4.8193 1.1410 34 1 2.0632 -6.9694 0.4727 35 1 3.1396 -5.8264 1.3188 36 1 4.2431 -8.9315 -3.2836 37 1 3.8807 -5.3178 -3.4471 38 1 3.2638 -6.8388 -4.1359 39 1 6.0197 -4.4158 -4.1434 40 1 7.7187 -4.2950 -5.9204 41 1 7.7238 -5.5683 -8.6345 42 1 6.2371 -7.9464 -7.5748 43 1 4.5484 -8.0659 -5.7879 44 1 4.8026 -4.4102 -0.3724 45 1 4.5884 -4.8190 -2.0950 46 1 2.3146 -3.8992 -2.0797 47 1 3.4270 -2.6721 -1.4263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183897056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:02 Heat of formation + Delta-G solvation = -115.091593 kcal Electronic energy + Delta-G solvation = -29069.672775 eV Core-core repulsion = 25023.654206 eV Total energy + Delta-G solvation = -4046.018569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 18.88 seconds Orbital eigenvalues (eV) -41.69493 -40.58497 -39.26049 -38.20333 -37.09043 -36.07252 -34.48531 -33.36479 -32.08553 -31.87560 -30.25213 -29.19192 -27.28812 -25.36527 -24.68072 -23.75822 -23.65644 -22.23476 -22.15124 -20.20469 -19.30499 -18.82143 -18.47388 -17.96538 -17.00929 -16.80890 -16.66440 -16.43478 -16.27372 -16.03007 -15.94338 -15.87749 -15.35711 -15.16568 -15.07414 -14.60167 -14.31959 -14.27915 -14.01913 -13.55394 -13.34482 -13.26622 -13.04714 -12.82528 -12.80081 -12.66716 -12.54797 -12.51621 -12.34475 -12.18026 -12.12007 -11.85358 -11.64868 -11.32010 -11.29122 -10.62090 -10.59464 -9.88382 -9.82352 -9.37715 -9.05704 -8.18676 -6.29067 0.26827 0.45989 1.41354 1.45299 1.47971 1.55498 1.85163 2.42400 2.69348 3.13815 3.16685 3.22762 3.36676 3.39640 3.78487 3.85045 3.92435 3.99980 4.02732 4.11279 4.11982 4.21346 4.22936 4.42305 4.43453 4.49667 4.54445 4.69383 4.77309 4.80866 4.85436 4.94306 4.98752 5.06387 5.13332 5.20418 5.23155 5.37800 5.39934 5.51903 5.65232 5.65900 5.94660 6.03457 6.19608 6.34453 6.55668 6.57595 6.87035 6.88668 6.98117 7.41254 8.92390 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.003084 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.700070 B = 9076.257664 C =11255.396721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.521 4.521 8 H 0.072 0.928 9 C 0.209 3.791 10 N -0.539 5.539 11 C 0.044 3.956 12 C 0.125 3.875 13 N -0.604 5.604 14 C 0.486 3.514 15 O -0.577 6.577 16 C 0.111 3.889 17 H 0.137 0.863 18 O -0.542 6.542 19 C -0.109 4.109 20 C -0.091 4.091 21 C -0.104 4.104 22 C -0.154 4.154 23 C 0.091 3.909 24 O -0.514 6.514 25 C -0.156 4.156 26 C -0.092 4.092 27 C 0.109 3.891 28 C 0.049 3.951 29 H 0.263 0.737 30 H -0.040 1.040 31 H 0.002 0.998 32 H 0.016 0.984 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.389 0.611 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.409 0.591 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.090 0.910 45 H 0.120 0.880 46 H 0.020 0.980 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.144 -12.299 -13.109 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.090 0.910 9 C 0.083 3.917 10 N -0.264 5.264 11 C -0.085 4.085 12 C 0.002 3.998 13 N -0.338 5.338 14 C 0.275 3.725 15 O -0.457 6.457 16 C 0.049 3.951 17 H 0.154 0.846 18 O -0.348 6.348 19 C -0.146 4.146 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.172 4.172 23 C 0.047 3.953 24 O -0.327 6.327 25 C -0.174 4.174 26 C -0.110 4.110 27 C -0.013 4.013 28 C -0.080 4.080 29 H 0.072 0.928 30 H -0.022 1.022 31 H 0.020 0.980 32 H 0.034 0.966 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.239 0.761 37 H 0.119 0.881 38 H 0.105 0.895 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.267 0.733 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.108 0.892 45 H 0.138 0.862 46 H 0.038 0.962 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.961 -12.809 -12.034 22.446 hybrid contribution -1.780 1.024 -0.910 2.246 sum 12.182 -11.786 -12.944 21.327 Atomic orbital electron populations 1.70087 1.07918 1.27944 1.51808 1.25920 0.95634 1.03277 0.94839 0.85445 0.78101 0.77832 0.79305 1.18694 1.21519 1.19351 1.21432 0.93898 0.90589 1.49968 0.91003 1.19361 0.90065 0.88893 0.93384 1.62004 1.27036 1.02440 1.34908 1.22412 0.95575 0.90047 1.00461 1.21636 0.91488 0.98321 0.88388 1.48338 1.46368 1.09096 1.30005 1.22081 0.83637 0.82628 0.84144 1.90667 1.52350 1.32898 1.69810 1.21832 0.97543 0.85260 0.90494 0.84553 1.86593 1.38776 1.23735 1.85723 1.21357 0.97494 1.02684 0.93092 1.19642 0.97458 0.95638 0.96377 1.21228 0.94169 0.98186 0.98609 1.21600 0.99887 0.99481 0.96273 1.18685 0.90105 0.94942 0.91543 1.84768 1.39579 1.79615 1.28707 1.21584 0.95503 0.99481 1.00825 1.21101 0.98218 0.98244 0.93422 1.22374 0.95004 0.80812 1.03143 1.22467 0.95519 1.00075 0.89897 0.92795 1.02205 0.97951 0.96557 0.90252 0.89336 0.89851 0.76080 0.88135 0.89501 0.83688 0.84329 0.73258 0.84471 0.84496 0.89167 0.86248 0.96180 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.79 13.29 21.45 0.28 -54.51 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 41.90 29.54 68.60 2.03 43.93 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.52 -27.51 8.41 25.60 0.22 -27.29 16 8 H 0.07 3.60 7.13 -2.91 -0.02 3.58 16 9 C 0.21 10.55 4.72 85.56 0.40 10.95 16 10 N -0.54 -21.21 4.62 -898.86 -4.15 -25.36 16 11 C 0.04 1.52 5.62 86.38 0.49 2.00 16 12 C 0.12 3.56 6.61 86.35 0.57 4.13 16 13 N -0.60 -15.63 3.00 -817.04 -2.45 -18.09 16 14 C 0.49 12.52 7.05 87.65 0.62 13.13 16 15 O -0.58 -18.83 15.76 15.73 0.25 -18.58 16 16 C 0.11 2.12 2.55 29.85 0.08 2.20 16 17 H 0.14 2.26 7.59 -2.39 -0.02 2.24 16 18 O -0.54 -11.19 12.44 -130.21 -1.62 -12.81 16 19 C -0.11 -1.76 4.62 29.85 0.14 -1.62 16 20 C -0.09 -1.49 4.94 -19.85 -0.10 -1.59 16 21 C -0.10 -1.64 9.69 22.25 0.22 -1.43 16 22 C -0.15 -2.53 9.99 22.37 0.22 -2.31 16 23 C 0.09 1.58 6.70 22.51 0.15 1.73 16 24 O -0.51 -7.81 13.50 -92.37 -1.25 -9.05 16 25 C -0.16 -2.55 9.99 22.37 0.22 -2.33 16 26 C -0.09 -1.48 9.33 22.25 0.21 -1.27 16 27 C 0.11 2.48 5.83 86.50 0.50 2.98 16 28 C 0.05 1.58 5.47 86.54 0.47 2.06 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H -0.04 -2.21 8.12 -2.39 -0.02 -2.23 16 31 H 0.00 0.13 7.97 -2.39 -0.02 0.11 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 2.72 7.99 -2.39 -0.02 2.70 16 34 H 0.09 2.57 7.04 -2.38 -0.02 2.55 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.39 6.49 8.72 -74.06 -0.65 5.84 16 37 H 0.10 1.60 5.53 -2.38 -0.01 1.59 16 38 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 39 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.41 2.24 9.06 -74.06 -0.67 1.57 16 42 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.12 1.90 4.18 -2.39 -0.01 1.89 16 46 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.09 3.07 6.67 -2.39 -0.02 3.06 16 Total: -1.00 -71.91 381.65 -2.35 -74.26 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.31 Total: 18.34 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 4.87 Total: 1.87 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -6.32 Total: -97.96 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -2.62 Total: -40.45 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -71.91 -2.35 -74.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183897056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.829 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.88 seconds