Wall clock time and date at job start Tue Mar 31 2020 20:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99780 * 2 1 4 4 H 1.48500 * 109.47466 * 240.00004 * 3 2 1 5 5 H 1.48502 * 109.47222 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47289 * 120.00110 * 3 2 1 7 7 C 1.38811 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99454 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99452 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46855 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.46823 * 304.99489 * 11 10 9 13 13 C 1.54809 * 109.46665 * 185.00079 * 11 10 9 14 14 N 1.45125 * 109.53540 * 172.11589 * 13 11 10 15 15 C 1.34776 * 118.75290 * 269.30969 * 14 13 11 16 16 O 1.21699 * 119.99733 * 177.16543 * 15 14 13 17 17 C 1.46657 * 120.00363 * 357.15900 * 15 14 13 18 18 O 1.34934 * 126.00638 * 6.81599 * 17 15 14 19 19 C 1.33945 * 109.37637 * 179.82625 * 18 17 15 20 20 C 1.35134 * 108.75628 * 0.43626 * 19 18 17 21 21 C 1.36475 * 126.00631 * 187.12277 * 17 15 14 22 22 C 1.51076 * 143.67150 * 0.02562 * 21 17 15 23 23 C 1.54378 * 105.24024 * 162.83057 * 22 21 17 24 24 C 1.51147 * 143.44460 * 179.74358 * 20 19 18 25 25 C 1.47503 * 122.48411 * 89.28726 * 14 13 11 26 26 C 1.53563 * 111.02914 * 318.37187 * 25 14 13 27 27 C 1.51537 * 109.58196 * 320.01797 * 26 25 14 28 28 O 1.38013 * 109.47009 * 64.99090 * 11 10 9 29 29 H 0.96994 * 120.00116 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00433 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46979 * 60.00177 * 10 9 7 32 32 H 1.09002 * 109.46968 * 300.00124 * 10 9 7 33 33 H 1.08997 * 109.45918 * 52.09551 * 13 11 10 34 34 H 1.08997 * 109.45963 * 292.13337 * 13 11 10 35 35 H 1.08008 * 125.61989 * 180.13684 * 19 18 17 36 36 H 1.09003 * 110.28975 * 281.78203 * 22 21 17 37 37 H 1.09005 * 110.29245 * 43.89984 * 22 21 17 38 38 H 1.08998 * 110.76869 * 268.15061 * 23 22 21 39 39 H 1.09004 * 110.75798 * 144.76189 * 23 22 21 40 40 H 1.09006 * 110.28466 * 316.11403 * 24 20 19 41 41 H 1.08996 * 110.29107 * 78.13343 * 24 20 19 42 42 H 1.09005 * 109.16528 * 197.97271 * 25 14 13 43 43 H 1.08998 * 109.12342 * 78.74360 * 25 14 13 44 44 H 1.08995 * 109.45557 * 80.05539 * 26 25 14 45 45 H 1.09000 * 109.45558 * 199.98660 * 26 25 14 46 46 H 1.09003 * 109.58946 * 211.18473 * 27 26 25 47 47 H 1.09002 * 109.59167 * 331.62246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.3796 -4.7130 0.8415 13 6 1.8339 -6.1567 0.1271 14 7 0.8908 -7.2439 0.3139 15 6 0.5425 -7.5916 1.5686 16 8 -0.2852 -8.4651 1.7504 17 6 1.1610 -6.9175 2.7149 18 8 1.9888 -5.8535 2.6574 19 6 2.3538 -5.5069 3.8987 20 6 1.7705 -6.3536 4.7756 21 6 1.0052 -7.2599 4.0268 22 6 0.3257 -8.2371 4.9572 23 6 1.0862 -8.1191 6.2955 24 6 1.6406 -6.6793 6.2458 25 6 0.2988 -7.9823 -0.8174 26 6 -0.0921 -7.0272 -1.9546 27 6 -0.6912 -5.7628 -1.3726 28 8 0.3474 -4.8116 -1.1796 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6848 -3.7144 0.8905 32 1 2.6849 -3.7144 -0.8895 33 1 2.5065 -6.1083 0.9834 34 1 2.4128 -6.3301 -0.7800 35 1 3.0104 -4.6888 4.1560 36 1 -0.7212 -7.9652 5.0919 37 1 0.4062 -9.2510 4.5650 38 1 1.8985 -8.8442 6.3437 39 1 0.4062 -8.2424 7.1384 40 1 2.6158 -6.6330 6.7307 41 1 0.9472 -5.9890 6.7260 42 1 -0.5897 -8.5118 -0.4735 43 1 1.0241 -8.7052 -1.1907 44 1 0.7938 -6.7744 -2.5371 45 1 -0.8244 -7.5120 -2.6003 46 1 -1.4331 -5.3592 -2.0617 47 1 -1.1625 -5.9885 -0.4160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201062279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:10 Heat of formation + Delta-G solvation = -28.834847 kcal Electronic energy + Delta-G solvation = -30267.075947 eV Core-core repulsion = 26224.797751 eV Total energy + Delta-G solvation = -4042.278196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.99604 -40.33027 -38.48521 -37.45483 -35.38267 -34.73444 -33.11565 -31.11194 -30.78205 -30.36569 -28.74475 -27.55496 -26.44839 -25.17125 -23.50890 -22.61397 -22.01972 -21.02631 -20.72667 -20.36915 -19.06209 -17.27704 -17.18397 -16.83878 -16.76659 -16.27690 -16.01669 -15.58281 -15.22427 -14.93638 -14.67617 -14.29518 -14.26859 -13.62845 -13.51911 -13.29058 -13.07577 -13.06200 -12.84892 -12.54913 -12.29008 -12.10292 -11.89997 -11.73423 -11.66569 -11.36202 -11.34828 -11.21374 -10.93067 -10.77646 -10.74829 -10.40094 -10.16535 -10.00549 -9.68771 -9.41986 -9.34743 -8.83777 -8.74133 -8.45501 -6.86037 -5.70303 -2.98864 1.01973 2.23611 2.53550 3.04560 3.08156 3.46630 3.50820 3.52222 3.90174 3.97482 4.37959 4.59919 4.62486 4.75343 4.81132 4.85706 4.93822 5.01592 5.05579 5.13972 5.20905 5.33391 5.42684 5.51847 5.53620 5.57059 5.60741 5.64222 5.66026 5.68068 5.78295 5.84289 5.90042 5.93363 5.99889 6.04096 6.12727 6.16286 6.29353 6.31867 6.38899 6.62828 6.76356 6.81552 7.20230 7.72412 7.93086 8.01527 8.47686 9.59104 10.17525 10.53173 11.52449 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.004052 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.075177 B = 6908.743618 C = 9060.079604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.168 3.832 11 C 0.091 3.909 12 H 0.049 0.951 13 C 0.063 3.937 14 N -0.600 5.600 15 C 0.600 3.400 16 O -0.527 6.527 17 C -0.069 4.069 18 O -0.141 6.141 19 C 0.018 3.982 20 C -0.224 4.224 21 C -0.104 4.104 22 C -0.053 4.053 23 C -0.118 4.118 24 C -0.046 4.046 25 C 0.111 3.889 26 C -0.165 4.165 27 C 0.072 3.928 28 O -0.368 6.368 29 H 0.255 0.745 30 H 0.387 0.613 31 H 0.035 0.965 32 H 0.027 0.973 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.211 0.789 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 -19.590 7.305 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.370 5.370 10 C 0.040 3.960 11 C 0.031 3.969 12 H 0.067 0.933 13 C -0.060 4.060 14 N -0.332 5.332 15 C 0.389 3.611 16 O -0.405 6.405 17 C -0.121 4.121 18 O -0.037 6.037 19 C -0.051 4.051 20 C -0.225 4.225 21 C -0.107 4.107 22 C -0.090 4.090 23 C -0.156 4.156 24 C -0.083 4.083 25 C -0.010 4.010 26 C -0.203 4.203 27 C -0.004 4.004 28 O -0.286 6.286 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.124 0.876 34 H 0.107 0.893 35 H 0.227 0.773 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.757 -19.692 6.938 21.060 hybrid contribution 0.181 0.876 0.215 0.920 sum 2.939 -18.815 7.153 20.343 Atomic orbital electron populations 1.69667 1.05111 1.25628 1.57623 1.24728 0.95475 0.97588 1.03107 0.86280 0.78498 0.83668 0.77792 1.21293 1.21741 1.21337 1.19169 0.90924 0.84122 1.42782 0.91250 1.42224 1.05997 0.99467 1.89288 1.20584 0.92320 0.84598 0.98486 1.22285 0.93562 0.93765 0.87269 0.93314 1.22984 0.92243 0.86554 1.04264 1.47816 1.44884 1.34936 1.05520 1.16814 0.81205 0.81837 0.81288 1.90824 1.32966 1.32037 1.84719 1.20941 1.02783 0.94114 0.94222 1.84526 1.50401 1.39516 1.29266 1.23619 1.00835 0.99862 0.80782 1.21271 1.03853 0.99332 0.98067 1.21167 0.99051 0.99134 0.91371 1.20540 0.98948 0.97615 0.91877 1.22381 0.99811 0.96357 0.97021 1.20424 1.01574 0.96560 0.89770 1.21884 0.99369 0.93846 0.85895 1.22500 1.02861 0.97102 0.97874 1.22140 0.89840 0.88387 1.00069 1.86432 1.48125 1.55634 1.38405 0.93537 0.77956 0.94787 0.95539 0.87587 0.89330 0.77289 0.89740 0.90285 0.90922 0.90259 0.90813 0.90261 0.88922 0.91433 0.90015 0.89572 0.89153 0.93412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.94 5.54 -59.90 -0.33 -19.27 16 10 C 0.17 3.44 5.92 -4.04 -0.02 3.42 16 11 C 0.09 1.61 2.27 -25.78 -0.06 1.55 16 12 H 0.05 0.96 8.05 -51.93 -0.42 0.54 16 13 C 0.06 0.89 4.46 -3.83 -0.02 0.87 16 14 N -0.60 -8.33 2.19 -174.03 -0.38 -8.72 16 15 C 0.60 9.34 7.60 -12.86 -0.10 9.25 16 16 O -0.53 -9.08 16.17 5.19 0.08 -9.00 16 17 C -0.07 -1.04 6.73 -36.82 -0.25 -1.29 16 18 O -0.14 -2.00 6.70 4.90 0.03 -1.97 16 19 C 0.02 0.22 12.08 29.63 0.36 0.58 16 20 C -0.22 -2.69 6.93 -104.74 -0.73 -3.41 16 21 C -0.10 -1.42 6.66 -104.31 -0.70 -2.11 16 22 C -0.05 -0.58 6.76 -26.98 -0.18 -0.76 16 23 C -0.12 -0.97 7.06 -25.29 -0.18 -1.15 16 24 C -0.05 -0.42 6.76 -26.95 -0.18 -0.60 16 25 C 0.11 1.30 6.17 -3.20 -0.02 1.28 16 26 C -0.17 -1.84 5.78 -27.18 -0.16 -2.00 16 27 C 0.07 1.04 6.37 36.42 0.23 1.28 16 28 O -0.37 -6.69 9.38 -26.53 -0.25 -6.94 16 29 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.39 10.89 7.65 -40.82 -0.31 10.58 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 1.46 4.73 -52.28 -0.25 1.21 16 34 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 35 H 0.21 1.88 8.06 -52.48 -0.42 1.45 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.12 6.97 -51.93 -0.36 0.76 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.94 8.01 -51.93 -0.42 0.52 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.05 0.73 7.40 -51.93 -0.38 0.35 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -34.23 375.65 -8.91 -43.14 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -7.18 Total: 8.07 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -2.24 Total: -0.48 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.01 Total: -55.99 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.13 Total: -17.91 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.23 -8.91 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201062279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.301 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds