Wall clock time and date at job start Tue Mar 31 2020 20:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 119.99780 * 2 1 4 4 H 1.48500 * 109.47466 * 240.00004 * 3 2 1 5 5 H 1.48502 * 109.47222 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47289 * 120.00110 * 3 2 1 7 7 C 1.38811 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00098 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99454 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99452 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46855 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.46823 * 304.99489 * 11 10 9 13 13 C 1.54809 * 109.46665 * 185.00079 * 11 10 9 14 14 N 1.45125 * 109.53540 * 172.11589 * 13 11 10 15 15 C 1.34776 * 118.75290 * 269.30969 * 14 13 11 16 16 O 1.21699 * 119.99733 * 177.16543 * 15 14 13 17 17 C 1.46657 * 120.00363 * 357.15900 * 15 14 13 18 18 O 1.34934 * 126.00638 * 6.81599 * 17 15 14 19 19 C 1.33945 * 109.37637 * 179.82625 * 18 17 15 20 20 C 1.35134 * 108.75628 * 0.43626 * 19 18 17 21 21 C 1.36475 * 126.00631 * 187.12277 * 17 15 14 22 22 C 1.51076 * 143.67150 * 0.02562 * 21 17 15 23 23 C 1.54378 * 105.24024 * 162.83057 * 22 21 17 24 24 C 1.51147 * 143.44460 * 179.74358 * 20 19 18 25 25 C 1.47503 * 122.48411 * 89.28726 * 14 13 11 26 26 C 1.53563 * 111.02914 * 318.37187 * 25 14 13 27 27 C 1.51537 * 109.58196 * 320.01797 * 26 25 14 28 28 O 1.38013 * 109.47009 * 64.99090 * 11 10 9 29 29 H 0.96994 * 120.00116 * 359.97438 * 1 2 3 30 30 H 0.96998 * 120.00433 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46979 * 60.00177 * 10 9 7 32 32 H 1.09002 * 109.46968 * 300.00124 * 10 9 7 33 33 H 1.08997 * 109.45918 * 52.09551 * 13 11 10 34 34 H 1.08997 * 109.45963 * 292.13337 * 13 11 10 35 35 H 1.08008 * 125.61989 * 180.13684 * 19 18 17 36 36 H 1.09003 * 110.28975 * 281.78203 * 22 21 17 37 37 H 1.09005 * 110.29245 * 43.89984 * 22 21 17 38 38 H 1.08998 * 110.76869 * 268.15061 * 23 22 21 39 39 H 1.09004 * 110.75798 * 144.76189 * 23 22 21 40 40 H 1.09006 * 110.28466 * 316.11403 * 24 20 19 41 41 H 1.08996 * 110.29107 * 78.13343 * 24 20 19 42 42 H 1.09005 * 109.16528 * 197.97271 * 25 14 13 43 43 H 1.08998 * 109.12342 * 78.74360 * 25 14 13 44 44 H 1.08995 * 109.45557 * 80.05539 * 26 25 14 45 45 H 1.09000 * 109.45558 * 199.98660 * 26 25 14 46 46 H 1.09003 * 109.58946 * 211.18473 * 27 26 25 47 47 H 1.09002 * 109.59167 * 331.62246 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 -0.0001 12 1 0.3796 -4.7130 0.8415 13 6 1.8339 -6.1567 0.1271 14 7 0.8908 -7.2439 0.3139 15 6 0.5425 -7.5916 1.5686 16 8 -0.2852 -8.4651 1.7504 17 6 1.1610 -6.9175 2.7149 18 8 1.9888 -5.8535 2.6574 19 6 2.3538 -5.5069 3.8987 20 6 1.7705 -6.3536 4.7756 21 6 1.0052 -7.2599 4.0268 22 6 0.3257 -8.2371 4.9572 23 6 1.0862 -8.1191 6.2955 24 6 1.6406 -6.6793 6.2458 25 6 0.2988 -7.9823 -0.8174 26 6 -0.0921 -7.0272 -1.9546 27 6 -0.6912 -5.7628 -1.3726 28 8 0.3474 -4.8116 -1.1796 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6848 -3.7144 0.8905 32 1 2.6849 -3.7144 -0.8895 33 1 2.5065 -6.1083 0.9834 34 1 2.4128 -6.3301 -0.7800 35 1 3.0104 -4.6888 4.1560 36 1 -0.7212 -7.9652 5.0919 37 1 0.4062 -9.2510 4.5650 38 1 1.8985 -8.8442 6.3437 39 1 0.4062 -8.2424 7.1384 40 1 2.6158 -6.6330 6.7307 41 1 0.9472 -5.9890 6.7260 42 1 -0.5897 -8.5118 -0.4735 43 1 1.0241 -8.7052 -1.1907 44 1 0.7938 -6.7744 -2.5371 45 1 -0.8244 -7.5120 -2.6003 46 1 -1.4331 -5.3592 -2.0617 47 1 -1.1625 -5.9885 -0.4160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201062279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:09 Heat of formation + Delta-G solvation = -50.387386 kcal Electronic energy + Delta-G solvation = -30268.010535 eV Core-core repulsion = 26224.797751 eV Total energy + Delta-G solvation = -4043.212784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.36 seconds Orbital eigenvalues (eV) -43.98886 -41.51210 -39.77326 -38.31687 -36.76301 -36.32011 -34.56969 -32.87840 -31.70425 -31.38997 -30.23365 -28.49199 -27.65709 -26.68223 -24.88868 -24.02769 -23.01111 -22.50239 -21.71174 -21.35227 -20.09941 -19.23953 -18.31717 -18.06756 -17.92608 -17.41163 -17.09022 -16.82309 -16.56091 -16.05976 -15.94724 -15.81226 -15.20776 -15.11847 -14.80487 -14.71073 -14.56364 -14.08713 -13.89935 -13.74424 -13.59637 -13.36023 -13.13739 -12.77701 -12.70590 -12.64361 -12.56828 -12.41126 -12.17020 -12.09164 -12.03138 -11.96088 -11.79322 -11.62162 -11.33792 -10.93462 -10.65008 -10.30134 -9.87009 -9.51464 -8.97857 -7.90831 -5.20444 -0.05312 1.28055 1.48806 1.50664 1.53040 1.58966 1.94296 2.01286 2.58864 2.68025 3.02915 3.35358 3.43216 3.61178 3.77996 3.80340 3.94135 4.01576 4.02453 4.12496 4.15771 4.18829 4.24986 4.32218 4.35250 4.47403 4.52404 4.67585 4.71129 4.76969 4.79441 4.80730 4.89368 4.92931 5.00511 5.05310 5.07019 5.11660 5.16855 5.21914 5.31176 5.32657 5.44607 5.51053 5.78545 6.08656 6.29002 6.67926 6.79710 7.35587 8.10210 8.34664 9.32987 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010307 B = 0.004052 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.075177 B = 6908.743618 C = 9060.079604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.081 0.919 9 N -0.741 5.741 10 C 0.167 3.833 11 C 0.105 3.895 12 H 0.020 0.980 13 C 0.077 3.923 14 N -0.598 5.598 15 C 0.594 3.406 16 O -0.553 6.553 17 C -0.103 4.103 18 O -0.154 6.154 19 C 0.012 3.988 20 C -0.229 4.229 21 C -0.117 4.117 22 C -0.058 4.058 23 C -0.108 4.108 24 C -0.046 4.046 25 C 0.107 3.893 26 C -0.152 4.152 27 C 0.067 3.933 28 O -0.395 6.395 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.238 0.762 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -20.347 7.867 22.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.383 5.383 10 C 0.040 3.960 11 C 0.045 3.955 12 H 0.038 0.962 13 C -0.047 4.047 14 N -0.328 5.328 15 C 0.384 3.616 16 O -0.434 6.434 17 C -0.154 4.154 18 O -0.050 6.050 19 C -0.057 4.057 20 C -0.230 4.230 21 C -0.120 4.120 22 C -0.095 4.095 23 C -0.146 4.146 24 C -0.083 4.083 25 C -0.013 4.013 26 C -0.190 4.190 27 C -0.009 4.009 28 O -0.314 6.314 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.254 0.746 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.135 0.865 46 H 0.116 0.884 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 4.559 -20.489 7.489 22.286 hybrid contribution -0.389 1.065 0.051 1.135 sum 4.170 -19.424 7.540 21.249 Atomic orbital electron populations 1.69852 1.06869 1.26020 1.59603 1.25605 0.96319 1.01235 1.03726 0.85175 0.77122 0.78886 0.78347 1.20354 1.22448 1.19947 1.19647 0.91637 0.85075 1.41155 0.90069 1.42441 1.05509 1.00986 1.89341 1.20741 0.92794 0.83473 0.98964 1.21982 0.92729 0.94591 0.86174 0.96188 1.22789 0.91737 0.84712 1.05412 1.47887 1.44622 1.34586 1.05727 1.17002 0.80952 0.81654 0.81959 1.90790 1.34120 1.33303 1.85190 1.21003 1.04411 0.95215 0.94729 1.84469 1.50604 1.39516 1.30460 1.24297 1.00779 1.00357 0.80227 1.21746 1.03065 0.98599 0.99631 1.21707 0.98977 0.99886 0.91441 1.20695 0.99086 0.96739 0.92998 1.22403 1.00141 0.96125 0.95894 1.20564 1.02947 0.97010 0.87775 1.22087 0.99803 0.94140 0.85274 1.22414 1.03565 0.95226 0.97757 1.22342 0.89406 0.89428 0.99728 1.86361 1.49134 1.57534 1.38351 0.94163 0.79761 0.93286 0.95138 0.87063 0.87413 0.74558 0.90034 0.90718 0.89904 0.88017 0.88762 0.89658 0.89531 0.88969 0.89641 0.86502 0.88387 0.95002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.26 13.06 21.65 0.28 -60.97 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.74 -39.24 5.54 -343.44 -1.90 -41.14 16 10 C 0.17 6.83 5.92 86.38 0.51 7.34 16 11 C 0.11 3.76 2.27 31.21 0.07 3.83 16 12 H 0.02 0.83 8.05 -2.39 -0.02 0.81 16 13 C 0.08 2.12 4.46 87.25 0.39 2.51 16 14 N -0.60 -16.43 2.19 -822.71 -1.80 -18.23 16 15 C 0.59 18.91 7.60 86.44 0.66 19.56 16 16 O -0.55 -19.58 16.17 -4.35 -0.07 -19.65 16 17 C -0.10 -3.14 6.73 24.06 0.16 -2.98 16 18 O -0.15 -4.39 6.70 -5.38 -0.04 -4.42 16 19 C 0.01 0.28 12.08 67.10 0.81 1.10 16 20 C -0.23 -5.27 6.93 -19.94 -0.14 -5.41 16 21 C -0.12 -3.19 6.66 -19.66 -0.13 -3.32 16 22 C -0.06 -1.25 6.76 30.43 0.21 -1.05 16 23 C -0.11 -1.54 7.06 31.53 0.22 -1.31 16 24 C -0.05 -0.72 6.76 30.45 0.21 -0.52 16 25 C 0.11 2.36 6.17 86.38 0.53 2.89 16 26 C -0.15 -3.11 5.78 30.30 0.18 -2.94 16 27 C 0.07 1.93 6.37 71.50 0.46 2.39 16 28 O -0.39 -14.52 9.38 -117.84 -1.11 -15.62 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.37 21.64 7.65 -92.71 -0.71 20.93 16 31 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 3.00 4.73 -7.93 -0.04 2.97 16 34 H 0.11 2.57 8.11 -2.39 -0.02 2.55 16 35 H 0.24 3.86 8.06 -2.91 -0.02 3.83 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 2.04 6.97 -2.38 -0.02 2.03 16 43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.75 8.01 -2.39 -0.02 1.73 16 45 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.03 1.01 7.40 -2.39 -0.02 0.99 16 Total: -1.00 -75.53 375.65 3.08 -72.45 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.25 Total: 34.08 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.44 Total: 5.14 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -3.42 Total: -120.35 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.21 Total: -39.70 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -75.53 3.08 -72.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201062279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.059 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.36 seconds