Wall clock time and date at job start Tue Mar 31 2020 21:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.88911 * 25.05559 * 10 9 7 12 12 C 1.53952 * 113.65985 * 253.70920 * 10 9 7 13 13 C 1.53952 * 87.29627 * 270.26239 * 12 10 9 14 14 H 1.09003 * 113.66019 * 89.73416 * 13 12 10 15 15 N 1.46499 * 113.66328 * 220.70266 * 13 12 10 16 16 C 1.34778 * 119.99683 * 255.49356 * 15 13 12 17 17 O 1.21283 * 119.99887 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99796 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47224 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47532 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47532 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47276 * 59.99895 * 21 20 19 23 23 F 1.39900 * 109.47256 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.46866 * 299.99968 * 21 20 19 25 25 C 1.52909 * 113.66261 * 156.40134 * 10 9 7 26 26 C 1.52909 * 121.14074 * 323.84830 * 25 10 9 27 27 C 1.53954 * 86.78350 * 209.37437 * 26 25 10 28 28 C 1.52905 * 121.14029 * 215.28267 * 25 10 9 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.58246 * 24.86595 * 12 10 9 32 32 H 1.08999 * 113.57762 * 155.58681 * 12 10 9 33 33 H 0.96997 * 119.99860 * 75.49900 * 15 13 12 34 34 H 1.08996 * 109.46949 * 299.99705 * 18 16 15 35 35 H 1.08999 * 109.47308 * 59.99696 * 18 16 15 36 36 H 1.09008 * 109.46989 * 300.00108 * 19 18 16 37 37 H 1.08999 * 109.47224 * 59.99648 * 19 18 16 38 38 H 1.08996 * 109.46974 * 299.99912 * 20 19 18 39 39 H 1.08999 * 109.46974 * 59.99715 * 20 19 18 40 40 H 1.09002 * 113.66323 * 323.85124 * 26 25 10 41 41 H 1.09001 * 113.66091 * 94.90602 * 26 25 10 42 42 H 1.08991 * 113.58006 * 270.13684 * 27 26 25 43 43 H 1.09002 * 113.57874 * 139.33852 * 27 26 25 44 44 H 1.08996 * 113.66435 * 265.10147 * 28 25 10 45 45 H 1.09003 * 113.66343 * 36.15604 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0558 -3.5680 0.4369 12 6 2.0305 -4.3932 -1.3445 13 6 0.7476 -5.0902 -0.8560 14 1 -0.1656 -4.5490 -1.1035 15 7 0.6806 -6.5111 -1.2062 16 6 -0.1236 -6.9212 -2.2070 17 8 -0.7914 -6.1139 -2.8179 18 6 -0.1930 -8.3830 -2.5669 19 6 -1.1724 -8.5768 -3.7262 20 6 -1.2424 -10.0608 -4.0920 21 6 -2.2214 -10.2546 -5.2517 22 9 -1.7830 -9.5213 -6.3596 23 9 -2.2858 -11.6115 -5.5859 24 9 -3.4910 -9.8081 -4.8698 25 6 1.2507 -4.8285 0.5673 26 6 0.2764 -4.6337 1.7296 27 6 0.5752 -6.0949 2.1114 28 6 1.9225 -5.9327 1.3843 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 1.8706 -3.7335 -2.1972 32 1 2.8701 -5.0734 -1.4875 33 1 1.2149 -7.1567 -0.7178 34 1 0.7961 -8.7312 -2.8643 35 1 -0.5348 -8.9539 -1.7036 36 1 -2.1615 -8.2286 -3.4283 37 1 -0.8311 -8.0058 -4.5896 38 1 -0.2534 -10.4085 -4.3901 39 1 -1.5836 -10.6321 -3.2287 40 1 0.6174 -3.9096 2.4696 41 1 -0.7533 -4.4659 1.4138 42 1 -0.0921 -6.8146 1.6373 43 1 0.6754 -6.2533 3.1852 44 1 2.2080 -6.8025 0.7928 45 1 2.7262 -5.5738 2.0274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203425462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:39 Heat of formation + Delta-G solvation = -153.023252 kcal Electronic energy + Delta-G solvation = -28954.969342 eV Core-core repulsion = 24365.449192 eV Total energy + Delta-G solvation = -4589.520150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.37735 -47.89350 -47.83634 -40.67389 -39.06298 -35.37013 -35.03073 -34.03623 -32.44263 -30.19186 -29.34747 -25.58849 -25.34894 -24.33079 -23.91477 -22.81527 -21.88598 -20.30088 -20.15412 -18.84032 -18.63544 -18.26917 -17.61932 -17.20683 -16.55342 -16.18193 -15.87722 -15.30215 -14.91438 -14.83516 -14.76825 -14.32024 -14.24556 -14.09525 -14.01797 -13.96330 -13.85883 -13.18721 -13.01436 -12.82567 -12.57123 -12.45113 -12.17642 -12.12373 -11.91061 -11.81976 -11.65816 -11.53680 -11.22823 -10.94303 -10.85485 -10.68201 -10.23533 -10.09447 -9.92233 -9.81135 -9.60382 -9.41057 -8.84509 -8.67230 -6.98551 -5.79043 -3.08598 2.44851 2.70339 3.20000 3.42816 3.47745 3.49570 3.51760 3.72601 3.73551 4.44338 4.52455 4.52814 4.65423 4.67971 4.84543 4.90179 4.94079 4.97911 5.00451 5.12790 5.22996 5.31726 5.43488 5.60331 5.63524 5.72578 5.85629 5.87661 5.97889 5.99735 6.01617 6.06930 6.22795 6.37043 6.45957 6.60804 6.68570 6.72914 6.83043 7.06783 7.63955 7.69455 8.33752 8.39263 9.50272 10.07087 10.41371 11.43033 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002274 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.041556 B =12309.286737 C =13297.759767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.186 3.814 11 H 0.066 0.934 12 C -0.182 4.182 13 C 0.153 3.847 14 H 0.113 0.887 15 N -0.717 5.717 16 C 0.507 3.493 17 O -0.536 6.536 18 C -0.138 4.138 19 C -0.111 4.111 20 C -0.166 4.166 21 C 0.451 3.549 22 F -0.182 7.182 23 F -0.188 7.188 24 F -0.182 7.182 25 C -0.127 4.127 26 C -0.114 4.114 27 C -0.142 4.142 28 C -0.109 4.109 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.395 0.605 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 -25.336 -2.974 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.072 3.928 11 H 0.084 0.916 12 C -0.225 4.225 13 C 0.049 3.951 14 H 0.131 0.869 15 N -0.368 5.368 16 C 0.292 3.708 17 O -0.412 6.412 18 C -0.178 4.178 19 C -0.149 4.149 20 C -0.204 4.204 21 C 0.397 3.603 22 F -0.164 7.164 23 F -0.170 7.170 24 F -0.164 7.164 25 C -0.130 4.130 26 C -0.151 4.151 27 C -0.179 4.179 28 C -0.147 4.147 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.136 -24.551 -3.428 24.789 hybrid contribution 0.233 0.487 -0.063 0.543 sum 0.097 -24.064 -3.491 24.316 Atomic orbital electron populations 1.69668 1.05114 1.25806 1.57106 1.24765 0.95513 0.97759 1.02672 0.86183 0.78612 0.83775 0.77546 1.21674 1.21778 1.20745 1.19249 0.91037 0.83878 1.43300 0.91034 1.42091 1.05771 0.99133 1.86875 1.20789 0.94694 0.85083 0.92209 0.91572 1.24295 0.96069 0.99718 1.02420 1.22326 0.99730 0.79589 0.93472 0.86872 1.46128 1.45125 1.09962 1.35552 1.20539 0.79497 0.90542 0.80192 1.90759 1.43295 1.55650 1.51532 1.21595 1.01697 0.94583 0.99894 1.21346 1.01746 0.92319 0.99522 1.22915 0.99696 1.01456 0.96358 1.20602 0.81536 0.73466 0.84655 1.93202 1.89272 1.77425 1.56478 1.93185 1.96608 1.33553 1.93613 1.93201 1.43015 1.89172 1.91007 1.23534 0.98391 0.98121 0.92916 1.22548 0.99247 0.95546 0.97805 1.22872 0.97208 0.98109 0.99711 1.22512 0.97022 0.97166 0.98015 0.93397 0.77921 0.90954 0.91353 0.76958 0.88652 0.88680 0.89575 0.89564 0.87185 0.87184 0.89415 0.91777 0.90929 0.91961 0.92350 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 9 N -0.70 -17.08 5.11 -52.99 -0.27 -17.35 16 10 C 0.19 3.53 4.35 -67.48 -0.29 3.24 16 11 H 0.07 1.26 8.11 -51.93 -0.42 0.83 16 12 C -0.18 -3.15 7.68 -25.74 -0.20 -3.35 16 13 C 0.15 2.43 4.01 -67.32 -0.27 2.16 16 14 H 0.11 2.23 7.54 -51.93 -0.39 1.84 16 15 N -0.72 -8.58 5.31 -53.22 -0.28 -8.87 16 16 C 0.51 6.44 7.83 -10.99 -0.09 6.35 16 17 O -0.54 -9.57 15.62 5.55 0.09 -9.48 16 18 C -0.14 -1.01 5.70 -27.89 -0.16 -1.16 16 19 C -0.11 -0.91 4.26 -26.73 -0.11 -1.02 16 20 C -0.17 -0.91 5.26 -26.73 -0.14 -1.05 16 21 C 0.45 3.70 3.16 37.16 0.12 3.82 16 22 F -0.18 -1.80 16.80 2.25 0.04 -1.76 16 23 F -0.19 -1.60 17.32 2.25 0.04 -1.56 16 24 F -0.18 -1.79 16.80 2.25 0.04 -1.76 16 25 C -0.13 -1.92 0.92 -154.55 -0.14 -2.06 16 26 C -0.11 -1.75 7.46 -26.28 -0.20 -1.94 16 27 C -0.14 -1.63 8.08 -25.75 -0.21 -1.84 16 28 C -0.11 -1.25 7.46 -26.28 -0.20 -1.45 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.39 10.16 7.78 -40.82 -0.32 9.84 16 31 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.40 3.50 6.69 -40.82 -0.27 3.23 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.84 7.76 -51.92 -0.40 0.44 16 37 H 0.09 0.85 7.76 -51.93 -0.40 0.45 16 38 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -32.57 380.30 -7.79 -40.37 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.74 Total: 10.16 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -2.13 Total: -5.49 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.17 Total: -53.43 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.57 -7.79 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203425462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.658 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds