Wall clock time and date at job start Tue Mar 31 2020 21:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.09002 * 112.88911 * 25.05559 * 10 9 7 12 12 C 1.53952 * 113.65985 * 253.70920 * 10 9 7 13 13 C 1.53952 * 87.29627 * 270.26239 * 12 10 9 14 14 H 1.09003 * 113.66019 * 89.73416 * 13 12 10 15 15 N 1.46499 * 113.66328 * 220.70266 * 13 12 10 16 16 C 1.34778 * 119.99683 * 255.49356 * 15 13 12 17 17 O 1.21283 * 119.99887 * 0.02562 * 16 15 13 18 18 C 1.50698 * 119.99796 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47224 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47532 * 179.97438 * 19 18 16 21 21 C 1.52997 * 109.47532 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47276 * 59.99895 * 21 20 19 23 23 F 1.39900 * 109.47256 * 180.02562 * 21 20 19 24 24 F 1.39900 * 109.46866 * 299.99968 * 21 20 19 25 25 C 1.52909 * 113.66261 * 156.40134 * 10 9 7 26 26 C 1.52909 * 121.14074 * 323.84830 * 25 10 9 27 27 C 1.53954 * 86.78350 * 209.37437 * 26 25 10 28 28 C 1.52905 * 121.14029 * 215.28267 * 25 10 9 29 29 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 30 30 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 31 31 H 1.08996 * 113.58246 * 24.86595 * 12 10 9 32 32 H 1.08999 * 113.57762 * 155.58681 * 12 10 9 33 33 H 0.96997 * 119.99860 * 75.49900 * 15 13 12 34 34 H 1.08996 * 109.46949 * 299.99705 * 18 16 15 35 35 H 1.08999 * 109.47308 * 59.99696 * 18 16 15 36 36 H 1.09008 * 109.46989 * 300.00108 * 19 18 16 37 37 H 1.08999 * 109.47224 * 59.99648 * 19 18 16 38 38 H 1.08996 * 109.46974 * 299.99912 * 20 19 18 39 39 H 1.08999 * 109.46974 * 59.99715 * 20 19 18 40 40 H 1.09002 * 113.66323 * 323.85124 * 26 25 10 41 41 H 1.09001 * 113.66091 * 94.90602 * 26 25 10 42 42 H 1.08991 * 113.58006 * 270.13684 * 27 26 25 43 43 H 1.09002 * 113.57874 * 139.33852 * 27 26 25 44 44 H 1.08996 * 113.66435 * 265.10147 * 28 25 10 45 45 H 1.09003 * 113.66343 * 36.15604 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 3.0558 -3.5680 0.4369 12 6 2.0305 -4.3932 -1.3445 13 6 0.7476 -5.0902 -0.8560 14 1 -0.1656 -4.5490 -1.1035 15 7 0.6806 -6.5111 -1.2062 16 6 -0.1236 -6.9212 -2.2070 17 8 -0.7914 -6.1139 -2.8179 18 6 -0.1930 -8.3830 -2.5669 19 6 -1.1724 -8.5768 -3.7262 20 6 -1.2424 -10.0608 -4.0920 21 6 -2.2214 -10.2546 -5.2517 22 9 -1.7830 -9.5213 -6.3596 23 9 -2.2858 -11.6115 -5.5859 24 9 -3.4910 -9.8081 -4.8698 25 6 1.2507 -4.8285 0.5673 26 6 0.2764 -4.6337 1.7296 27 6 0.5752 -6.0949 2.1114 28 6 1.9225 -5.9327 1.3843 29 1 -0.4850 0.8401 -0.0004 30 1 0.3555 -2.3880 0.0005 31 1 1.8706 -3.7335 -2.1972 32 1 2.8701 -5.0734 -1.4875 33 1 1.2149 -7.1567 -0.7178 34 1 0.7961 -8.7312 -2.8643 35 1 -0.5348 -8.9539 -1.7036 36 1 -2.1615 -8.2286 -3.4283 37 1 -0.8311 -8.0058 -4.5896 38 1 -0.2534 -10.4085 -4.3901 39 1 -1.5836 -10.6321 -3.2287 40 1 0.6174 -3.9096 2.4696 41 1 -0.7533 -4.4659 1.4138 42 1 -0.0921 -6.8146 1.6373 43 1 0.6754 -6.2533 3.1852 44 1 2.2080 -6.8025 0.7928 45 1 2.7262 -5.5738 2.0274 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203425462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:14 Heat of formation + Delta-G solvation = -174.411002 kcal Electronic energy + Delta-G solvation = -28955.896784 eV Core-core repulsion = 24365.449192 eV Total energy + Delta-G solvation = -4590.447592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 33.89 seconds Orbital eigenvalues (eV) -51.04616 -48.55348 -48.54725 -41.91236 -40.15478 -36.56225 -35.94747 -35.45169 -34.07346 -31.66479 -30.42150 -26.75752 -26.57046 -25.60793 -25.27245 -24.12494 -22.62175 -21.45859 -21.30419 -19.57224 -19.50280 -19.25394 -19.07703 -18.38365 -17.52887 -17.22511 -16.87229 -16.77954 -16.15629 -15.85089 -15.61902 -15.46034 -15.30432 -15.01208 -14.91143 -14.77667 -14.69833 -14.68631 -14.30084 -13.91645 -13.67628 -13.36665 -13.28313 -13.16571 -12.95890 -12.93203 -12.81968 -12.76687 -12.53518 -12.34941 -12.18490 -11.96503 -11.80058 -11.77778 -11.33584 -11.21454 -10.97346 -10.70741 -10.63096 -9.87148 -8.99104 -7.95741 -5.24559 1.45425 1.47717 1.55865 1.72400 1.85865 2.27751 2.54130 2.93963 3.09833 3.15384 3.35993 3.42815 3.52288 3.73824 3.81878 3.94223 4.00725 4.06334 4.07304 4.22567 4.23913 4.37766 4.53690 4.58436 4.61689 4.65720 4.73872 4.80512 4.91347 4.98878 5.04669 5.05974 5.12930 5.15449 5.24593 5.25541 5.31673 5.45292 5.51981 5.60817 5.78744 6.26456 6.68933 7.31355 7.40203 8.09061 8.30522 9.27779 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002274 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.041556 B =12309.286737 C =13297.759767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.239 4.239 8 H 0.080 0.920 9 N -0.717 5.717 10 C 0.163 3.837 11 H 0.071 0.929 12 C -0.171 4.171 13 C 0.162 3.838 14 H 0.063 0.937 15 N -0.699 5.699 16 C 0.498 3.502 17 O -0.599 6.599 18 C -0.123 4.123 19 C -0.113 4.113 20 C -0.151 4.151 21 C 0.443 3.557 22 F -0.197 7.197 23 F -0.189 7.189 24 F -0.197 7.197 25 C -0.115 4.115 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.092 4.092 29 H 0.250 0.750 30 H 0.371 0.629 31 H 0.031 0.969 32 H 0.105 0.895 33 H 0.417 0.583 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -29.214 -1.768 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.371 4.371 8 H 0.098 0.902 9 N -0.354 5.354 10 C 0.052 3.948 11 H 0.089 0.911 12 C -0.213 4.213 13 C 0.056 3.944 14 H 0.082 0.918 15 N -0.352 5.352 16 C 0.287 3.713 17 O -0.479 6.479 18 C -0.162 4.162 19 C -0.151 4.151 20 C -0.188 4.188 21 C 0.389 3.611 22 F -0.179 7.179 23 F -0.171 7.171 24 F -0.179 7.179 25 C -0.118 4.118 26 C -0.169 4.169 27 C -0.158 4.158 28 C -0.130 4.130 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.050 0.950 32 H 0.123 0.877 33 H 0.257 0.743 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.115 0.885 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.491 -28.518 -2.200 28.711 hybrid contribution -0.580 1.655 -0.493 1.821 sum 1.911 -26.863 -2.693 27.066 Atomic orbital electron populations 1.69844 1.06777 1.25992 1.59618 1.25602 0.96333 1.01259 1.03872 0.85125 0.77843 0.79450 0.77261 1.21805 1.22374 1.18921 1.19685 0.91555 0.85040 1.40802 0.90204 1.42250 1.05224 1.00597 1.87294 1.21125 0.95068 0.84457 0.94112 0.91125 1.24160 0.98117 0.99559 0.99492 1.21704 0.96918 0.81708 0.94032 0.91849 1.45869 1.45355 1.08325 1.35641 1.21651 0.77991 0.92666 0.79012 1.90752 1.45696 1.57929 1.53558 1.21640 1.03555 0.90234 1.00782 1.21272 1.00714 0.94027 0.99102 1.22926 1.00368 0.99523 0.96027 1.21160 0.81625 0.73110 0.85193 1.93173 1.89339 1.77836 1.57535 1.93179 1.96616 1.33549 1.93717 1.93173 1.44273 1.89360 1.91069 1.23424 0.98190 0.97658 0.92498 1.22592 0.97850 0.98608 0.97815 1.22801 0.97162 0.94719 1.01158 1.22536 0.96955 0.96361 0.97122 0.94144 0.79739 0.94983 0.87698 0.74327 0.84858 0.84789 0.92069 0.92135 0.84295 0.84243 0.91511 0.94234 0.89287 0.90163 0.88541 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.35 13.06 21.65 0.28 -61.07 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 4 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.24 -13.39 9.97 84.03 0.84 -12.55 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 9 N -0.72 -36.62 5.11 -321.55 -1.64 -38.27 16 10 C 0.16 6.25 4.35 45.28 0.20 6.45 16 11 H 0.07 2.62 8.11 -2.39 -0.02 2.60 16 12 C -0.17 -5.91 7.68 31.23 0.24 -5.67 16 13 C 0.16 5.19 4.01 45.38 0.18 5.37 16 14 H 0.06 2.71 7.54 -2.39 -0.02 2.69 16 15 N -0.70 -14.95 5.31 -440.67 -2.34 -17.29 16 16 C 0.50 11.89 7.83 87.66 0.69 12.58 16 17 O -0.60 -22.25 15.62 -3.04 -0.05 -22.29 16 18 C -0.12 -1.28 5.70 29.85 0.17 -1.11 16 19 C -0.11 -1.65 4.26 30.59 0.13 -1.52 16 20 C -0.15 -1.13 5.26 30.59 0.16 -0.97 16 21 C 0.44 6.68 3.16 71.98 0.23 6.91 16 22 F -0.20 -3.85 16.80 44.97 0.76 -3.09 16 23 F -0.19 -2.88 17.32 44.97 0.78 -2.10 16 24 F -0.20 -3.83 16.80 44.97 0.76 -3.08 16 25 C -0.12 -3.37 0.92 -52.21 -0.05 -3.42 16 26 C -0.13 -4.03 7.46 30.89 0.23 -3.80 16 27 C -0.12 -2.37 8.08 31.23 0.25 -2.11 16 28 C -0.09 -1.71 7.46 30.88 0.23 -1.48 16 29 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.37 20.95 7.78 -92.71 -0.72 20.23 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.42 5.16 6.69 -92.71 -0.62 4.54 16 34 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 1.19 7.76 -2.38 -0.02 1.18 16 37 H 0.06 1.19 7.76 -2.39 -0.02 1.17 16 38 H 0.14 0.30 8.14 -2.39 -0.02 0.29 16 39 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.10 1.11 6.43 -2.39 -0.02 1.10 16 45 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -79.92 380.30 4.22 -75.70 By element: Atomic # 1 Polarization: 28.27 SS G_CDS: -0.32 Total: 27.96 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 3.96 Total: -5.47 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -3.70 Total: -116.62 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 2.29 Total: -8.26 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -79.92 4.22 -75.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203425462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.708 kcal (2) G-P(sol) polarization free energy of solvation -79.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 33.89 seconds