Wall clock time and date at job start Tue Mar 31 2020 21:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86806 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46842 * 300.00159 * 3 2 1 6 6 H 1.48498 * 109.46833 * 59.99925 * 3 2 1 7 7 C 1.38814 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.95174 * 26.90254 * 10 9 7 12 12 C 1.53957 * 113.66452 * 255.49811 * 10 9 7 13 13 C 1.53945 * 87.29527 * 270.26429 * 12 10 9 14 14 H 1.08994 * 113.66328 * 220.79509 * 13 12 10 15 15 N 1.46496 * 113.66561 * 89.82756 * 13 12 10 16 16 C 1.34771 * 119.99960 * 104.50930 * 15 13 12 17 17 O 1.21281 * 120.00381 * 359.97438 * 16 15 13 18 18 C 1.50707 * 120.00140 * 180.02562 * 16 15 13 19 19 C 1.52996 * 109.47263 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47177 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47052 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.46922 * 59.99930 * 21 20 19 23 23 F 1.39905 * 109.46664 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.46853 * 299.99701 * 21 20 19 25 25 C 1.52906 * 113.66637 * 158.31246 * 10 9 7 26 26 C 1.52911 * 121.13708 * 323.85381 * 25 10 9 27 27 C 1.53953 * 86.78498 * 209.37459 * 26 25 10 28 28 C 1.52908 * 121.14322 * 215.29266 * 25 10 9 29 29 H 0.96997 * 120.00331 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 31 31 H 1.09004 * 113.57788 * 24.86558 * 12 10 9 32 32 H 1.08997 * 113.58156 * 155.58012 * 12 10 9 33 33 H 0.97002 * 120.00399 * 284.50312 * 15 13 12 34 34 H 1.08999 * 109.46872 * 299.99621 * 18 16 15 35 35 H 1.09001 * 109.47078 * 59.99424 * 18 16 15 36 36 H 1.09005 * 109.46852 * 299.99465 * 19 18 16 37 37 H 1.09001 * 109.47283 * 59.99868 * 19 18 16 38 38 H 1.08999 * 109.47040 * 299.99990 * 20 19 18 39 39 H 1.09004 * 109.47495 * 59.99853 * 20 19 18 40 40 H 1.09001 * 113.66341 * 323.84544 * 26 25 10 41 41 H 1.08996 * 113.66624 * 94.90194 * 26 25 10 42 42 H 1.09002 * 113.58246 * 270.13531 * 27 26 25 43 43 H 1.08997 * 113.65416 * 139.34277 * 27 26 25 44 44 H 1.09003 * 113.66175 * 265.09643 * 28 25 10 45 45 H 1.09004 * 113.66268 * 36.05302 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0457 -3.5773 0.4536 12 6 2.0612 -4.3684 -1.3657 13 6 0.7680 -5.0740 -0.9190 14 1 0.7250 -6.1266 -1.1984 15 7 -0.4520 -4.3417 -1.2678 16 6 -1.2189 -4.7601 -2.2939 17 8 -0.8990 -5.7426 -2.9290 18 6 -2.4736 -4.0064 -2.6531 19 6 -3.1524 -4.6846 -3.8448 20 6 -4.4265 -3.9198 -4.2091 21 6 -5.1050 -4.5977 -5.4012 22 9 -5.4323 -5.9154 -5.0642 23 9 -6.2703 -3.8986 -5.7339 24 9 -4.2330 -4.5989 -6.4952 25 6 1.2380 -4.8390 0.5170 26 6 0.2356 -4.6664 1.6587 27 6 0.5255 -6.1347 2.0195 28 6 1.8901 -5.9587 1.3288 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 1.9204 -3.6932 -2.2098 32 1 2.9041 -5.0459 -1.5023 33 1 -0.7078 -3.5557 -0.7601 34 1 -3.1528 -4.0043 -1.8006 35 1 -2.2181 -2.9801 -2.9167 36 1 -2.4730 -4.6863 -4.6973 37 1 -3.4079 -5.7110 -3.5817 38 1 -5.1057 -3.9184 -3.3565 39 1 -4.1715 -2.8932 -4.4721 40 1 0.5582 -3.9569 2.4207 41 1 -0.7861 -4.4924 1.3214 42 1 -0.1298 -6.8452 1.5156 43 1 0.5998 -6.3151 3.0919 44 1 2.1901 -6.8171 0.7277 45 1 2.6788 -5.6125 1.9968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203425463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:56 Heat of formation + Delta-G solvation = -151.917360 kcal Electronic energy + Delta-G solvation = -29535.815155 eV Core-core repulsion = 24946.342960 eV Total energy + Delta-G solvation = -4589.472194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.23203 -47.74268 -47.69795 -40.67618 -38.90123 -35.41655 -34.96680 -33.66318 -32.33467 -30.10183 -29.42796 -25.55781 -25.18859 -24.31822 -23.96346 -22.77672 -21.72401 -20.25629 -19.95940 -18.69534 -18.52280 -18.24120 -17.50664 -17.20661 -16.40089 -15.95259 -15.60245 -15.27993 -14.75099 -14.65809 -14.62600 -14.46435 -14.15578 -14.00300 -13.89766 -13.85205 -13.76595 -13.19048 -13.05076 -12.81513 -12.53412 -12.41868 -12.09313 -11.94068 -11.84106 -11.60759 -11.51391 -11.42387 -11.00757 -10.98168 -10.91935 -10.71492 -10.23224 -10.13042 -9.88765 -9.78928 -9.52380 -9.37999 -8.92517 -8.53845 -7.09385 -5.92388 -3.20036 2.61271 2.89310 3.34031 3.35359 3.42615 3.43566 3.68783 3.89831 3.90345 4.45367 4.65211 4.71892 4.75086 4.90923 4.93899 4.97355 5.12080 5.21152 5.22053 5.27420 5.32608 5.38756 5.57120 5.61092 5.82981 5.85471 5.88915 5.94007 5.98657 6.05362 6.06546 6.09858 6.24645 6.29677 6.38098 6.59113 6.67493 6.70967 6.92958 7.07974 7.61727 7.87339 8.27591 8.52650 9.38797 9.93698 10.27768 11.30608 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003214 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.976508 B = 8710.971182 C =10744.982645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.073 0.927 9 N -0.700 5.700 10 C 0.179 3.821 11 H 0.063 0.937 12 C -0.186 4.186 13 C 0.152 3.848 14 H 0.089 0.911 15 N -0.697 5.697 16 C 0.517 3.483 17 O -0.553 6.553 18 C -0.140 4.140 19 C -0.107 4.107 20 C -0.168 4.168 21 C 0.452 3.548 22 F -0.184 7.184 23 F -0.188 7.188 24 F -0.183 7.183 25 C -0.131 4.131 26 C -0.115 4.115 27 C -0.141 4.141 28 C -0.104 4.104 29 H 0.256 0.744 30 H 0.379 0.621 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.408 0.592 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.610 -10.532 -3.131 13.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.091 0.909 9 N -0.340 5.340 10 C 0.067 3.933 11 H 0.082 0.918 12 C -0.228 4.228 13 C 0.046 3.954 14 H 0.107 0.893 15 N -0.349 5.349 16 C 0.303 3.697 17 O -0.432 6.432 18 C -0.180 4.180 19 C -0.145 4.145 20 C -0.206 4.206 21 C 0.398 3.602 22 F -0.166 7.166 23 F -0.169 7.169 24 F -0.165 7.165 25 C -0.133 4.133 26 C -0.153 4.153 27 C -0.179 4.179 28 C -0.143 4.143 29 H 0.066 0.934 30 H 0.215 0.785 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.246 0.754 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.285 -11.049 -3.594 13.714 hybrid contribution -0.128 1.339 -0.041 1.346 sum -7.413 -9.710 -3.635 12.746 Atomic orbital electron populations 1.69616 1.05102 1.25787 1.57782 1.24701 0.95553 0.97684 1.02672 0.86106 0.78887 0.83930 0.77185 1.20524 1.21856 1.21839 1.19326 0.91230 0.83777 1.42701 0.90879 1.42079 1.05252 0.99378 1.87252 1.21045 0.94667 0.85105 0.92457 0.91849 1.24277 0.96190 1.00208 1.02107 1.21391 0.84525 0.95717 0.93757 0.89290 1.45748 1.24196 1.31497 1.33470 1.20477 0.84807 0.84589 0.79813 1.90669 1.73323 1.27419 1.51748 1.21594 0.95547 1.01291 0.99551 1.21308 0.94258 0.99691 0.99213 1.22943 0.99816 1.02215 0.95641 1.20636 0.76973 0.77257 0.85336 1.93183 1.93008 1.38150 1.92248 1.93184 1.51149 1.78917 1.93689 1.93193 1.69238 1.96385 1.57640 1.23397 0.98598 0.98385 0.92903 1.22510 0.98773 0.95946 0.98078 1.22856 0.97456 0.97653 0.99907 1.22486 0.96726 0.97018 0.98021 0.93446 0.78549 0.91007 0.90590 0.75398 0.88514 0.87889 0.89761 0.89911 0.87093 0.86927 0.89458 0.92026 0.90796 0.91926 0.91661 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.70 13.06 55.49 0.72 -24.98 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.17 9.98 -15.06 -0.15 -6.32 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.70 -15.77 4.97 -52.99 -0.26 -16.03 16 10 C 0.18 3.33 4.35 -67.48 -0.29 3.04 16 11 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 12 C -0.19 -3.23 7.68 -25.75 -0.20 -3.43 16 13 C 0.15 2.46 4.07 -67.48 -0.27 2.18 16 14 H 0.09 1.47 7.54 -51.93 -0.39 1.08 16 15 N -0.70 -11.17 4.72 -53.37 -0.25 -11.42 16 16 C 0.52 8.05 7.83 -10.98 -0.09 7.96 16 17 O -0.55 -10.20 15.62 5.56 0.09 -10.11 16 18 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 19 C -0.11 -1.14 4.26 -26.73 -0.11 -1.26 16 20 C -0.17 -1.40 5.26 -26.73 -0.14 -1.54 16 21 C 0.45 4.55 3.16 37.16 0.12 4.67 16 22 F -0.18 -2.04 16.80 2.25 0.04 -2.00 16 23 F -0.19 -1.96 17.32 2.25 0.04 -1.92 16 24 F -0.18 -2.11 16.80 2.25 0.04 -2.07 16 25 C -0.13 -1.99 0.77 -154.71 -0.12 -2.11 16 26 C -0.12 -1.71 7.18 -26.28 -0.19 -1.89 16 27 C -0.14 -1.74 8.08 -25.75 -0.21 -1.95 16 28 C -0.10 -1.33 7.84 -26.28 -0.21 -1.54 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.38 8.70 5.39 -40.82 -0.22 8.48 16 31 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.41 6.81 5.94 -40.82 -0.24 6.56 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 1.02 7.76 -51.93 -0.40 0.62 16 37 H 0.08 0.94 7.76 -51.93 -0.40 0.54 16 38 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -29.34 377.54 -7.71 -37.05 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -6.67 Total: 13.88 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.12 Total: -4.33 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.21 Total: -52.43 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.11 Total: -5.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.34 -7.71 -37.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203425463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.869 kcal (2) G-P(sol) polarization free energy of solvation -29.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds