Wall clock time and date at job start Tue Mar 31 2020 21:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86806 * 120.00051 * 2 1 4 4 H 1.48499 * 109.47240 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46842 * 300.00159 * 3 2 1 6 6 H 1.48498 * 109.46833 * 59.99925 * 3 2 1 7 7 C 1.38814 * 120.00190 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99911 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00101 * 180.02562 * 9 7 2 11 11 H 1.08997 * 112.95174 * 26.90254 * 10 9 7 12 12 C 1.53957 * 113.66452 * 255.49811 * 10 9 7 13 13 C 1.53945 * 87.29527 * 270.26429 * 12 10 9 14 14 H 1.08994 * 113.66328 * 220.79509 * 13 12 10 15 15 N 1.46496 * 113.66561 * 89.82756 * 13 12 10 16 16 C 1.34771 * 119.99960 * 104.50930 * 15 13 12 17 17 O 1.21281 * 120.00381 * 359.97438 * 16 15 13 18 18 C 1.50707 * 120.00140 * 180.02562 * 16 15 13 19 19 C 1.52996 * 109.47263 * 179.97438 * 18 16 15 20 20 C 1.52997 * 109.47177 * 179.97438 * 19 18 16 21 21 C 1.53005 * 109.47052 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.46922 * 59.99930 * 21 20 19 23 23 F 1.39905 * 109.46664 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.46853 * 299.99701 * 21 20 19 25 25 C 1.52906 * 113.66637 * 158.31246 * 10 9 7 26 26 C 1.52911 * 121.13708 * 323.85381 * 25 10 9 27 27 C 1.53953 * 86.78498 * 209.37459 * 26 25 10 28 28 C 1.52908 * 121.14322 * 215.29266 * 25 10 9 29 29 H 0.96997 * 120.00331 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99979 * 0.02562 * 9 7 2 31 31 H 1.09004 * 113.57788 * 24.86558 * 12 10 9 32 32 H 1.08997 * 113.58156 * 155.58012 * 12 10 9 33 33 H 0.97002 * 120.00399 * 284.50312 * 15 13 12 34 34 H 1.08999 * 109.46872 * 299.99621 * 18 16 15 35 35 H 1.09001 * 109.47078 * 59.99424 * 18 16 15 36 36 H 1.09005 * 109.46852 * 299.99465 * 19 18 16 37 37 H 1.09001 * 109.47283 * 59.99868 * 19 18 16 38 38 H 1.08999 * 109.47040 * 299.99990 * 20 19 18 39 39 H 1.09004 * 109.47495 * 59.99853 * 20 19 18 40 40 H 1.09001 * 113.66341 * 323.84544 * 26 25 10 41 41 H 1.08996 * 113.66624 * 94.90194 * 26 25 10 42 42 H 1.09002 * 113.58246 * 270.13531 * 27 26 25 43 43 H 1.08997 * 113.65416 * 139.34277 * 27 26 25 44 44 H 1.09003 * 113.66175 * 265.09643 * 28 25 10 45 45 H 1.09004 * 113.66268 * 36.05302 * 28 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0457 -3.5773 0.4536 12 6 2.0612 -4.3684 -1.3657 13 6 0.7680 -5.0740 -0.9190 14 1 0.7250 -6.1266 -1.1984 15 7 -0.4520 -4.3417 -1.2678 16 6 -1.2189 -4.7601 -2.2939 17 8 -0.8990 -5.7426 -2.9290 18 6 -2.4736 -4.0064 -2.6531 19 6 -3.1524 -4.6846 -3.8448 20 6 -4.4265 -3.9198 -4.2091 21 6 -5.1050 -4.5977 -5.4012 22 9 -5.4323 -5.9154 -5.0642 23 9 -6.2703 -3.8986 -5.7339 24 9 -4.2330 -4.5989 -6.4952 25 6 1.2380 -4.8390 0.5170 26 6 0.2356 -4.6664 1.6587 27 6 0.5255 -6.1347 2.0195 28 6 1.8901 -5.9587 1.3288 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3880 -0.0005 31 1 1.9204 -3.6932 -2.2098 32 1 2.9041 -5.0459 -1.5023 33 1 -0.7078 -3.5557 -0.7601 34 1 -3.1528 -4.0043 -1.8006 35 1 -2.2181 -2.9801 -2.9167 36 1 -2.4730 -4.6863 -4.6973 37 1 -3.4079 -5.7110 -3.5817 38 1 -5.1057 -3.9184 -3.3565 39 1 -4.1715 -2.8932 -4.4721 40 1 0.5582 -3.9569 2.4207 41 1 -0.7861 -4.4924 1.3214 42 1 -0.1298 -6.8452 1.5156 43 1 0.5998 -6.3151 3.0919 44 1 2.1901 -6.8171 0.7277 45 1 2.6788 -5.6125 1.9968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203425463.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:55 Heat of formation + Delta-G solvation = -167.830854 kcal Electronic energy + Delta-G solvation = -29536.505215 eV Core-core repulsion = 24946.342960 eV Total energy + Delta-G solvation = -4590.162255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.06179 -48.56812 -48.55160 -41.97212 -40.14107 -36.70180 -35.94131 -35.28928 -33.82969 -31.74648 -30.48659 -26.80848 -26.51055 -25.54922 -25.28373 -24.12624 -22.66070 -21.52192 -21.21132 -19.74601 -19.52015 -19.25598 -18.88020 -18.46084 -17.57997 -17.00334 -16.82689 -16.69129 -16.22689 -15.83363 -15.64016 -15.46963 -15.44297 -15.01638 -14.92581 -14.79057 -14.71609 -14.68125 -14.47892 -13.89088 -13.68305 -13.42585 -13.21173 -13.16687 -12.97231 -12.89457 -12.81507 -12.71072 -12.52753 -12.37539 -12.10765 -11.95669 -11.84398 -11.81842 -11.30595 -11.14242 -10.84858 -10.75755 -10.63120 -9.86289 -8.94791 -7.93801 -5.19504 1.48624 1.51117 1.58691 1.65696 1.81791 2.19842 2.57367 2.89711 3.07069 3.13784 3.38979 3.43299 3.62202 3.73537 3.83781 3.94244 3.98134 4.05140 4.07317 4.18681 4.27874 4.34856 4.46699 4.56129 4.62171 4.66923 4.71742 4.82957 4.89100 4.97558 5.01452 5.03414 5.12384 5.14433 5.18909 5.21884 5.24737 5.55113 5.56254 5.66132 5.72792 6.30691 6.59219 7.26139 7.38130 8.11085 8.36483 9.29252 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003214 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.976508 B = 8710.971182 C =10744.982645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.062 4.062 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.707 5.707 10 C 0.165 3.835 11 H 0.059 0.941 12 C -0.180 4.180 13 C 0.154 3.846 14 H 0.091 0.909 15 N -0.699 5.699 16 C 0.511 3.489 17 O -0.585 6.585 18 C -0.133 4.133 19 C -0.101 4.101 20 C -0.159 4.159 21 C 0.450 3.550 22 F -0.191 7.191 23 F -0.189 7.189 24 F -0.194 7.194 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.097 4.097 29 H 0.252 0.748 30 H 0.376 0.624 31 H 0.041 0.959 32 H 0.097 0.903 33 H 0.405 0.595 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.782 -11.218 -2.323 13.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.224 1.224 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.054 3.946 11 H 0.077 0.923 12 C -0.222 4.222 13 C 0.048 3.952 14 H 0.109 0.891 15 N -0.350 5.350 16 C 0.299 3.701 17 O -0.465 6.465 18 C -0.173 4.173 19 C -0.139 4.139 20 C -0.196 4.196 21 C 0.396 3.604 22 F -0.173 7.173 23 F -0.170 7.170 24 F -0.176 7.176 25 C -0.122 4.122 26 C -0.159 4.159 27 C -0.164 4.164 28 C -0.135 4.135 29 H 0.061 0.939 30 H 0.211 0.789 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.243 0.757 34 H 0.142 0.858 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.433 -11.765 -2.782 14.192 hybrid contribution -0.022 1.502 -0.319 1.536 sum -7.456 -10.262 -3.101 13.058 Atomic orbital electron populations 1.69720 1.06006 1.25953 1.59290 1.25318 0.96341 1.00198 1.03657 0.85230 0.78225 0.80697 0.76504 1.19750 1.22383 1.22149 1.19601 0.91384 0.85131 1.41173 0.91124 1.42128 1.05202 0.99949 1.87415 1.21250 0.94814 0.84842 0.93689 0.92283 1.24211 0.97996 1.00013 0.99982 1.21363 0.84103 0.95513 0.94245 0.89143 1.45831 1.24239 1.31288 1.33628 1.21191 0.85628 0.84317 0.78964 1.90649 1.74304 1.28972 1.52621 1.21627 0.94112 1.00683 1.00864 1.21200 0.94944 0.99681 0.98112 1.22939 0.98845 1.02158 0.95698 1.20902 0.76873 0.77063 0.85530 1.93169 1.93071 1.38815 1.92252 1.93181 1.51246 1.78868 1.93747 1.93173 1.69607 1.96418 1.58411 1.23316 0.98510 0.97601 0.92809 1.22504 0.98275 0.97675 0.97413 1.22786 0.96893 0.95574 1.01117 1.22538 0.97192 0.96211 0.97602 0.93895 0.78946 0.94002 0.88436 0.75748 0.85776 0.87463 0.91657 0.90642 0.84551 0.85455 0.91017 0.92408 0.90067 0.90182 0.90073 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -53.09 13.06 21.65 0.28 -52.81 16 2 C -0.06 -3.30 5.50 84.86 0.47 -2.84 16 3 Si 0.96 43.85 29.55 68.60 2.03 45.88 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 7 C -0.24 -12.49 9.98 84.04 0.84 -11.65 16 8 H 0.07 3.61 7.83 -2.91 -0.02 3.59 16 9 N -0.71 -32.07 4.97 -321.56 -1.60 -33.67 16 10 C 0.16 6.05 4.35 45.28 0.20 6.25 16 11 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 12 C -0.18 -6.22 7.68 31.23 0.24 -5.98 16 13 C 0.15 4.85 4.07 45.28 0.18 5.04 16 14 H 0.09 2.87 7.54 -2.39 -0.02 2.85 16 15 N -0.70 -22.18 4.72 -441.17 -2.08 -24.26 16 16 C 0.51 15.70 7.83 87.66 0.69 16.39 16 17 O -0.58 -21.55 15.62 -3.03 -0.05 -21.60 16 18 C -0.13 -2.91 5.70 29.85 0.17 -2.74 16 19 C -0.10 -2.07 4.26 30.59 0.13 -1.94 16 20 C -0.16 -2.33 5.26 30.60 0.16 -2.17 16 21 C 0.45 8.57 3.16 71.98 0.23 8.80 16 22 F -0.19 -4.07 16.80 44.97 0.76 -3.32 16 23 F -0.19 -3.69 17.32 44.97 0.78 -2.91 16 24 F -0.19 -4.40 16.80 44.97 0.76 -3.65 16 25 C -0.12 -3.52 0.77 -52.31 -0.04 -3.56 16 26 C -0.12 -3.42 7.18 30.89 0.22 -3.20 16 27 C -0.13 -2.76 8.08 31.23 0.25 -2.50 16 28 C -0.10 -2.22 7.84 30.88 0.24 -1.97 16 29 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 30 H 0.38 17.41 5.39 -92.71 -0.50 16.91 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.41 13.48 5.94 -92.71 -0.55 12.93 16 34 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.06 1.58 7.76 -2.38 -0.02 1.56 16 37 H 0.07 1.66 7.76 -2.39 -0.02 1.64 16 38 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 41 H 0.06 1.66 7.51 -2.39 -0.02 1.64 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.09 2.01 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -63.19 377.54 4.82 -58.37 By element: Atomic # 1 Polarization: 40.06 SS G_CDS: -0.03 Total: 40.03 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 3.98 Total: -2.07 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -3.40 Total: -110.74 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.05 Total: -21.60 kcal Atomic # 9 Polarization: -12.16 SS G_CDS: 2.29 Total: -9.87 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -63.19 4.82 -58.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203425463.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.461 kcal (2) G-P(sol) polarization free energy of solvation -63.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds