Wall clock time and date at job start Tue Mar 31 2020 21:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86807 * 119.99736 * 2 1 4 4 H 1.48498 * 109.46655 * 269.99818 * 3 2 1 5 5 H 1.48502 * 109.47070 * 29.99344 * 3 2 1 6 6 H 1.48494 * 109.46844 * 149.99775 * 3 2 1 7 7 C 1.38807 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99378 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.89282 * 336.34456 * 10 9 7 12 12 C 1.53950 * 113.74574 * 107.77411 * 10 9 7 13 13 C 1.53955 * 87.29825 * 139.21323 * 12 10 9 14 14 H 1.08998 * 113.74046 * 220.78342 * 13 12 10 15 15 N 1.46497 * 113.66485 * 89.73343 * 13 12 10 16 16 C 1.34777 * 119.99525 * 107.81233 * 15 13 12 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 13 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 20 20 C 1.52997 * 109.47000 * 179.97438 * 19 18 16 21 21 C 1.53011 * 109.46712 * 179.97438 * 20 19 18 22 22 F 1.39892 * 109.47085 * 60.00436 * 21 20 19 23 23 F 1.39903 * 109.46649 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.46966 * 299.99975 * 21 20 19 25 25 C 1.52909 * 86.77749 * 335.26492 * 13 12 10 26 26 C 1.52912 * 121.13510 * 259.17799 * 25 13 12 27 27 C 1.53947 * 86.78509 * 209.38321 * 26 25 13 28 28 C 1.52916 * 121.13473 * 150.62278 * 25 13 12 29 29 H 0.96992 * 120.00237 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00146 * 359.97438 * 9 7 2 31 31 H 1.08999 * 113.58537 * 24.60678 * 12 10 9 32 32 H 1.09003 * 113.57796 * 253.81124 * 12 10 9 33 33 H 0.97000 * 120.00580 * 287.81979 * 15 13 12 34 34 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 35 35 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 36 36 H 1.09000 * 109.46887 * 300.00372 * 19 18 16 37 37 H 1.08998 * 109.46846 * 59.99549 * 19 18 16 38 38 H 1.08995 * 109.47672 * 299.99669 * 20 19 18 39 39 H 1.09001 * 109.47109 * 60.00906 * 20 19 18 40 40 H 1.09004 * 113.66499 * 323.85857 * 26 25 13 41 41 H 1.08999 * 113.66010 * 94.91568 * 26 25 13 42 42 H 1.08999 * 113.58069 * 270.13638 * 27 26 25 43 43 H 1.08997 * 113.65513 * 139.34732 * 27 26 25 44 44 H 1.08999 * 113.65700 * 265.08473 * 28 25 13 45 45 H 1.08997 * 113.66089 * 36.05622 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0668 -3.5639 -0.4024 12 6 1.9958 -4.4086 1.3424 13 6 1.8273 -5.7030 0.5260 14 1 1.0976 -6.3950 0.9463 15 7 3.0955 -6.3511 0.1829 16 6 3.4549 -7.4958 0.7969 17 8 2.7283 -7.9896 1.6330 18 6 4.7566 -8.1658 0.4395 19 6 4.9188 -9.4407 1.2698 20 6 6.2400 -10.1213 0.9065 21 6 6.4024 -11.3959 1.7373 22 9 5.3405 -12.2660 1.4688 23 9 7.6109 -12.0179 1.4055 24 9 6.4049 -11.0688 3.0975 25 6 1.2660 -4.8229 -0.5913 26 6 -0.2403 -4.7145 -0.8311 27 6 0.1011 -4.4608 -2.3107 28 6 1.4184 -5.2175 -2.0608 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 1.1227 -4.1557 1.9439 32 1 2.9265 -4.3683 1.9086 33 1 3.6766 -5.9564 -0.4860 34 1 4.7554 -8.4203 -0.6204 35 1 5.5839 -7.4879 0.6494 36 1 4.9200 -9.1863 2.3297 37 1 4.0915 -10.1187 1.0599 38 1 6.2384 -10.3758 -0.1533 39 1 7.0675 -9.4435 1.1163 40 1 -0.7788 -5.6466 -0.6600 41 1 -0.7017 -3.8600 -0.3360 42 1 0.2425 -3.4071 -2.5511 43 1 -0.5673 -4.9674 -3.0068 44 1 2.2821 -4.7648 -2.5479 45 1 1.3477 -6.2911 -2.2350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203425464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:07 Heat of formation + Delta-G solvation = -153.936154 kcal Electronic energy + Delta-G solvation = -28834.014326 eV Core-core repulsion = 24244.454590 eV Total energy + Delta-G solvation = -4589.559736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.41355 -47.92564 -47.87739 -40.66575 -39.14329 -35.44857 -34.94011 -34.07064 -32.34220 -30.30720 -29.47259 -25.53026 -25.25968 -24.31364 -24.13635 -22.49737 -21.87086 -20.70732 -20.00702 -18.87848 -18.63946 -18.12309 -17.83821 -17.07176 -16.70653 -16.23603 -15.85704 -15.18672 -14.89243 -14.84211 -14.79008 -14.35629 -14.32258 -14.19512 -14.04590 -14.01883 -13.80529 -13.49159 -13.09293 -12.83790 -12.55862 -12.38111 -12.19513 -12.03021 -11.83884 -11.80482 -11.67830 -11.36748 -11.26710 -10.91432 -10.85654 -10.62450 -10.20340 -10.17335 -9.90667 -9.85183 -9.63606 -9.41351 -8.88539 -8.71198 -7.00944 -5.83505 -3.12212 2.41344 2.61914 3.10237 3.38646 3.44340 3.45988 3.47886 3.69190 3.69632 4.39712 4.49569 4.53304 4.62502 4.76503 4.91504 4.93599 4.97344 5.01348 5.07647 5.20911 5.24027 5.26404 5.41714 5.59598 5.66859 5.80044 5.81940 5.92917 5.97766 6.03210 6.08757 6.16010 6.27983 6.39384 6.47168 6.54921 6.62379 6.86236 6.90703 7.03054 7.57864 7.63905 8.25489 8.35204 9.46785 10.04047 10.38651 11.38648 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.002128 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.131076 B =13155.982671 C =13923.663099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.708 5.708 10 C 0.192 3.808 11 H 0.075 0.925 12 C -0.175 4.175 13 C 0.128 3.872 14 H 0.095 0.905 15 N -0.703 5.703 16 C 0.512 3.488 17 O -0.543 6.543 18 C -0.138 4.138 19 C -0.110 4.110 20 C -0.167 4.167 21 C 0.452 3.548 22 F -0.183 7.183 23 F -0.188 7.188 24 F -0.183 7.183 25 C -0.121 4.121 26 C -0.110 4.110 27 C -0.131 4.131 28 C -0.125 4.125 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.450 -21.003 -2.427 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.346 5.346 10 C 0.079 3.921 11 H 0.093 0.907 12 C -0.217 4.217 13 C 0.023 3.977 14 H 0.113 0.887 15 N -0.352 5.352 16 C 0.298 3.702 17 O -0.420 6.420 18 C -0.178 4.178 19 C -0.148 4.148 20 C -0.205 4.205 21 C 0.398 3.602 22 F -0.165 7.165 23 F -0.169 7.169 24 F -0.164 7.164 25 C -0.124 4.124 26 C -0.148 4.148 27 C -0.169 4.169 28 C -0.163 4.163 29 H 0.066 0.934 30 H 0.223 0.777 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.234 0.766 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.030 -21.187 -1.806 23.954 hybrid contribution 0.518 0.949 -0.140 1.090 sum 11.548 -20.238 -1.946 23.382 Atomic orbital electron populations 1.69649 1.05094 1.25791 1.57295 1.24749 0.95504 0.97725 1.02745 0.86210 0.78698 0.83893 0.77485 1.21723 1.21767 1.20777 1.19266 0.90999 0.84186 1.43105 0.91208 1.42403 1.05921 0.99569 1.86750 1.21272 0.94271 0.84572 0.91940 0.90700 1.24271 1.01893 0.95510 1.00013 1.21724 0.85222 0.93515 0.97279 0.88712 1.45623 1.22318 1.24789 1.42505 1.20504 0.87730 0.80657 0.81314 1.90716 1.53993 1.64365 1.32973 1.21595 0.96607 0.97525 1.02085 1.21336 0.95104 0.96434 1.01938 1.22925 1.02763 0.93405 1.01412 1.20606 0.73476 0.86820 0.79341 1.93194 1.57082 1.72544 1.93641 1.93189 1.46474 1.84935 1.92308 1.93200 1.96162 1.92496 1.34552 1.23588 0.97677 0.98069 0.93056 1.22451 0.93886 1.01621 0.96851 1.22739 0.96585 1.01452 0.96088 1.22634 0.98549 0.99166 0.95925 0.93418 0.77687 0.89645 0.92345 0.76554 0.88489 0.88402 0.89602 0.89676 0.87124 0.87082 0.90804 0.90292 0.89183 0.92512 0.91785 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.46 9.97 -15.06 -0.15 -6.61 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.71 -16.59 5.33 -52.99 -0.28 -16.88 16 10 C 0.19 3.51 4.27 -67.48 -0.29 3.22 16 11 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 12 C -0.17 -2.99 7.69 -25.75 -0.20 -3.19 16 13 C 0.13 1.87 4.12 -67.48 -0.28 1.59 16 14 H 0.09 1.52 7.46 -51.93 -0.39 1.13 16 15 N -0.70 -8.15 5.05 -53.37 -0.27 -8.42 16 16 C 0.51 6.00 7.83 -10.98 -0.09 5.91 16 17 O -0.54 -8.70 15.58 5.55 0.09 -8.61 16 18 C -0.14 -0.94 5.70 -27.88 -0.16 -1.10 16 19 C -0.11 -0.82 4.26 -26.73 -0.11 -0.93 16 20 C -0.17 -0.84 5.26 -26.73 -0.14 -0.98 16 21 C 0.45 3.46 3.16 37.16 0.12 3.58 16 22 F -0.18 -1.67 16.80 2.25 0.04 -1.63 16 23 F -0.19 -1.53 17.32 2.25 0.04 -1.49 16 24 F -0.18 -1.69 16.80 2.25 0.04 -1.66 16 25 C -0.12 -1.83 0.92 -154.71 -0.14 -1.98 16 26 C -0.11 -1.71 7.47 -26.28 -0.20 -1.91 16 27 C -0.13 -1.96 8.08 -25.75 -0.21 -2.16 16 28 C -0.13 -1.67 7.49 -26.27 -0.20 -1.86 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.39 9.68 5.92 -40.82 -0.24 9.43 16 31 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.75 8.62 -40.82 -0.35 3.40 16 34 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.77 7.76 -51.93 -0.40 0.37 16 37 H 0.08 0.74 7.76 -51.93 -0.40 0.34 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.42 6.42 -51.93 -0.33 1.09 16 42 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -31.47 380.25 -7.79 -39.27 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.74 Total: 10.21 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -2.14 Total: -6.82 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: 0.17 Total: -51.72 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.09 Total: -8.61 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.11 Total: -4.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.47 -7.79 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203425464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.670 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds