Wall clock time and date at job start Tue Mar 31 2020 21:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86807 * 119.99736 * 2 1 4 4 H 1.48498 * 109.46655 * 269.99818 * 3 2 1 5 5 H 1.48502 * 109.47070 * 29.99344 * 3 2 1 6 6 H 1.48494 * 109.46844 * 149.99775 * 3 2 1 7 7 C 1.38807 * 120.00519 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99378 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.89282 * 336.34456 * 10 9 7 12 12 C 1.53950 * 113.74574 * 107.77411 * 10 9 7 13 13 C 1.53955 * 87.29825 * 139.21323 * 12 10 9 14 14 H 1.08998 * 113.74046 * 220.78342 * 13 12 10 15 15 N 1.46497 * 113.66485 * 89.73343 * 13 12 10 16 16 C 1.34777 * 119.99525 * 107.81233 * 15 13 12 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 13 19 19 C 1.53004 * 109.47208 * 180.27843 * 18 16 15 20 20 C 1.52997 * 109.47000 * 179.97438 * 19 18 16 21 21 C 1.53011 * 109.46712 * 179.97438 * 20 19 18 22 22 F 1.39892 * 109.47085 * 60.00436 * 21 20 19 23 23 F 1.39903 * 109.46649 * 180.02562 * 21 20 19 24 24 F 1.39897 * 109.46966 * 299.99975 * 21 20 19 25 25 C 1.52909 * 86.77749 * 335.26492 * 13 12 10 26 26 C 1.52912 * 121.13510 * 259.17799 * 25 13 12 27 27 C 1.53947 * 86.78509 * 209.38321 * 26 25 13 28 28 C 1.52916 * 121.13473 * 150.62278 * 25 13 12 29 29 H 0.96992 * 120.00237 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00146 * 359.97438 * 9 7 2 31 31 H 1.08999 * 113.58537 * 24.60678 * 12 10 9 32 32 H 1.09003 * 113.57796 * 253.81124 * 12 10 9 33 33 H 0.97000 * 120.00580 * 287.81979 * 15 13 12 34 34 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 35 35 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 36 36 H 1.09000 * 109.46887 * 300.00372 * 19 18 16 37 37 H 1.08998 * 109.46846 * 59.99549 * 19 18 16 38 38 H 1.08995 * 109.47672 * 299.99669 * 20 19 18 39 39 H 1.09001 * 109.47109 * 60.00906 * 20 19 18 40 40 H 1.09004 * 113.66499 * 323.85857 * 26 25 13 41 41 H 1.08999 * 113.66010 * 94.91568 * 26 25 13 42 42 H 1.08999 * 113.58069 * 270.13638 * 27 26 25 43 43 H 1.08997 * 113.65513 * 139.34732 * 27 26 25 44 44 H 1.08999 * 113.65700 * 265.08473 * 28 25 13 45 45 H 1.08997 * 113.66089 * 36.05622 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 3.0668 -3.5639 -0.4024 12 6 1.9958 -4.4086 1.3424 13 6 1.8273 -5.7030 0.5260 14 1 1.0976 -6.3950 0.9463 15 7 3.0955 -6.3511 0.1829 16 6 3.4549 -7.4958 0.7969 17 8 2.7283 -7.9896 1.6330 18 6 4.7566 -8.1658 0.4395 19 6 4.9188 -9.4407 1.2698 20 6 6.2400 -10.1213 0.9065 21 6 6.4024 -11.3959 1.7373 22 9 5.3405 -12.2660 1.4688 23 9 7.6109 -12.0179 1.4055 24 9 6.4049 -11.0688 3.0975 25 6 1.2660 -4.8229 -0.5913 26 6 -0.2403 -4.7145 -0.8311 27 6 0.1011 -4.4608 -2.3107 28 6 1.4184 -5.2175 -2.0608 29 1 -0.4850 0.8400 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 1.1227 -4.1557 1.9439 32 1 2.9265 -4.3683 1.9086 33 1 3.6766 -5.9564 -0.4860 34 1 4.7554 -8.4203 -0.6204 35 1 5.5839 -7.4879 0.6494 36 1 4.9200 -9.1863 2.3297 37 1 4.0915 -10.1187 1.0599 38 1 6.2384 -10.3758 -0.1533 39 1 7.0675 -9.4435 1.1163 40 1 -0.7788 -5.6466 -0.6600 41 1 -0.7017 -3.8600 -0.3360 42 1 0.2425 -3.4071 -2.5511 43 1 -0.5673 -4.9674 -3.0068 44 1 2.2821 -4.7648 -2.5479 45 1 1.3477 -6.2911 -2.2350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203425464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:59 Heat of formation + Delta-G solvation = -173.205766 kcal Electronic energy + Delta-G solvation = -28834.849919 eV Core-core repulsion = 24244.454590 eV Total energy + Delta-G solvation = -4590.395329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 8.27 seconds Orbital eigenvalues (eV) -51.03286 -48.54164 -48.53122 -41.89334 -40.17697 -36.39290 -35.94376 -35.63755 -33.77194 -31.82923 -30.36189 -26.74679 -26.59427 -25.60246 -25.33522 -23.73514 -22.74986 -21.72349 -21.09786 -19.60371 -19.48964 -19.25644 -18.88132 -18.40163 -17.62446 -17.13467 -16.76714 -16.68808 -16.33403 -15.69165 -15.63321 -15.44639 -15.39980 -14.99766 -14.90943 -14.82616 -14.68539 -14.66881 -14.12789 -13.88992 -13.65645 -13.44212 -13.30184 -13.15275 -12.98362 -12.86532 -12.78807 -12.72562 -12.49124 -12.32277 -12.13457 -11.89803 -11.85474 -11.77775 -11.28877 -11.17651 -10.86680 -10.77805 -10.66074 -9.85045 -8.94039 -7.92334 -5.19731 1.48388 1.49297 1.57443 1.72332 1.86385 2.22638 2.57577 2.94781 3.10839 3.16968 3.38876 3.52301 3.67680 3.77131 3.82344 3.95855 4.03175 4.04031 4.09634 4.15802 4.28453 4.35866 4.54842 4.60153 4.62973 4.68341 4.75439 4.79392 4.89211 4.92958 5.05297 5.07906 5.11370 5.15100 5.21072 5.25512 5.32200 5.51439 5.61795 5.66176 5.73826 6.29686 6.67792 7.36429 7.36972 8.14452 8.36850 9.30857 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.019615 B = 0.002128 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.131076 B =13155.982671 C =13923.663099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.969 3.031 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.238 4.238 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.180 3.820 11 H 0.085 0.915 12 C -0.174 4.174 13 C 0.148 3.852 14 H 0.083 0.917 15 N -0.694 5.694 16 C 0.507 3.493 17 O -0.592 6.592 18 C -0.127 4.127 19 C -0.110 4.110 20 C -0.154 4.154 21 C 0.444 3.556 22 F -0.195 7.195 23 F -0.190 7.190 24 F -0.197 7.197 25 C -0.112 4.112 26 C -0.115 4.115 27 C -0.132 4.132 28 C -0.105 4.105 29 H 0.249 0.751 30 H 0.376 0.624 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.415 0.585 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.041 -22.374 -4.172 26.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.359 5.359 10 C 0.070 3.930 11 H 0.103 0.897 12 C -0.217 4.217 13 C 0.042 3.958 14 H 0.101 0.899 15 N -0.345 5.345 16 C 0.296 3.704 17 O -0.472 6.472 18 C -0.166 4.166 19 C -0.148 4.148 20 C -0.191 4.191 21 C 0.390 3.610 22 F -0.177 7.177 23 F -0.172 7.172 24 F -0.178 7.178 25 C -0.115 4.115 26 C -0.153 4.153 27 C -0.169 4.169 28 C -0.143 4.143 29 H 0.058 0.942 30 H 0.210 0.790 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.252 0.748 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.694 -22.599 -3.573 26.664 hybrid contribution -0.286 1.275 0.469 1.388 sum 13.407 -21.324 -3.104 25.379 Atomic orbital electron populations 1.69812 1.06582 1.25863 1.59735 1.25515 0.96278 1.00961 1.04071 0.85204 0.77719 0.79882 0.77344 1.21415 1.22798 1.19464 1.19681 0.91519 0.85275 1.40526 0.90390 1.42579 1.05617 1.00697 1.87021 1.21577 0.94842 0.83457 0.93154 0.89678 1.24132 1.00899 0.97283 0.99350 1.21315 0.86522 0.92160 0.95851 0.89917 1.45525 1.21312 1.24781 1.42839 1.21442 0.88834 0.80054 0.80062 1.90709 1.55871 1.65532 1.35093 1.21643 0.94142 0.96966 1.03853 1.21259 0.95936 0.96741 1.00864 1.22940 1.01999 0.91943 1.02265 1.21120 0.73000 0.87702 0.79138 1.93169 1.57683 1.73188 1.93645 1.93181 1.46608 1.85167 1.92243 1.93172 1.96194 1.92570 1.35891 1.23333 0.97063 0.96231 0.94849 1.22512 0.94262 1.01241 0.97321 1.22654 0.98399 1.00000 0.95862 1.22592 0.97729 1.00489 0.93453 0.94212 0.79032 0.91996 0.92304 0.74764 0.84905 0.85545 0.91909 0.91479 0.84360 0.84693 0.88753 0.93648 0.92551 0.90314 0.90866 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 2 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.24 -12.65 9.97 84.03 0.84 -11.81 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.46 5.33 -321.57 -1.71 -36.18 16 10 C 0.18 6.47 4.27 45.28 0.19 6.67 16 11 H 0.09 2.88 8.10 -2.39 -0.02 2.86 16 12 C -0.17 -5.98 7.69 31.23 0.24 -5.74 16 13 C 0.15 4.14 4.12 45.28 0.19 4.32 16 14 H 0.08 2.59 7.46 -2.39 -0.02 2.57 16 15 N -0.69 -14.07 5.05 -441.15 -2.23 -16.29 16 16 C 0.51 10.60 7.83 87.66 0.69 11.29 16 17 O -0.59 -18.48 15.58 -3.04 -0.05 -18.53 16 18 C -0.13 -1.20 5.70 29.85 0.17 -1.03 16 19 C -0.11 -1.37 4.26 30.59 0.13 -1.24 16 20 C -0.15 -1.02 5.26 30.60 0.16 -0.86 16 21 C 0.44 6.09 3.16 71.99 0.23 6.32 16 22 F -0.20 -3.38 16.80 44.97 0.76 -2.62 16 23 F -0.19 -2.76 17.32 44.97 0.78 -1.98 16 24 F -0.20 -3.52 16.80 44.97 0.76 -2.77 16 25 C -0.11 -3.26 0.92 -52.31 -0.05 -3.31 16 26 C -0.12 -3.56 7.47 30.88 0.23 -3.33 16 27 C -0.13 -3.77 8.08 31.23 0.25 -3.52 16 28 C -0.11 -2.48 7.49 30.89 0.23 -2.25 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.38 19.60 5.92 -92.71 -0.55 19.05 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.42 6.05 8.62 -92.71 -0.80 5.25 16 34 H 0.13 0.41 8.14 -2.38 -0.02 0.39 16 35 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 1.07 7.76 -2.39 -0.02 1.06 16 37 H 0.07 1.08 7.76 -2.39 -0.02 1.06 16 38 H 0.14 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.04 1.71 6.42 -2.39 -0.02 1.70 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -72.06 380.25 4.26 -67.80 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.32 Total: 29.74 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 3.97 Total: -8.27 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -3.66 Total: -110.58 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 2.29 Total: -7.37 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -72.06 4.26 -67.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203425464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.402 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.27 seconds