Wall clock time and date at job start Tue Mar 31 2020 21:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00126 * 2 1 4 4 H 1.48504 * 109.47207 * 269.99924 * 3 2 1 5 5 H 1.48497 * 109.47164 * 29.99845 * 3 2 1 6 6 H 1.48501 * 109.47039 * 149.99945 * 3 2 1 7 7 C 1.38818 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99850 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00097 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00088 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88463 * 336.34979 * 10 9 7 12 12 C 1.54147 * 113.80144 * 107.70593 * 10 9 7 13 13 C 1.53946 * 87.22553 * 139.16707 * 12 10 9 14 14 H 1.09000 * 113.66566 * 89.86404 * 13 12 10 15 15 N 1.46505 * 113.66022 * 220.82726 * 13 12 10 16 16 C 1.34777 * 120.00115 * 253.98525 * 15 13 12 17 17 O 1.21282 * 119.99620 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00369 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47466 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.46886 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47517 * 59.99549 * 21 20 19 23 23 F 1.39901 * 109.47059 * 180.02562 * 21 20 19 24 24 F 1.39904 * 109.46640 * 299.99483 * 21 20 19 25 25 C 1.52903 * 86.88499 * 335.34247 * 13 12 10 26 26 C 1.52913 * 121.14013 * 259.13682 * 25 13 12 27 27 C 1.53954 * 86.77973 * 209.37737 * 26 25 13 28 28 C 1.52910 * 121.14003 * 150.56809 * 25 13 12 29 29 H 0.96998 * 119.99920 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99929 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.58427 * 24.59243 * 12 10 9 32 32 H 1.09002 * 113.64021 * 253.74729 * 12 10 9 33 33 H 0.97003 * 120.00244 * 73.98555 * 15 13 12 34 34 H 1.09002 * 109.47120 * 59.99760 * 18 16 15 35 35 H 1.08998 * 109.46862 * 300.00562 * 18 16 15 36 36 H 1.09002 * 109.47153 * 59.99773 * 19 18 16 37 37 H 1.09001 * 109.46832 * 299.99964 * 19 18 16 38 38 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 39 39 H 1.08992 * 109.47399 * 59.99823 * 20 19 18 40 40 H 1.08996 * 113.66154 * 323.84583 * 26 25 13 41 41 H 1.09003 * 113.66159 * 94.90999 * 26 25 13 42 42 H 1.08995 * 113.58158 * 270.12694 * 27 26 25 43 43 H 1.09007 * 113.57765 * 139.33835 * 27 26 25 44 44 H 1.08995 * 113.66623 * 265.10120 * 28 25 13 45 45 H 1.09009 * 113.65899 * 36.15590 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5276 -3.2979 0.4022 12 6 4.7941 -2.7955 -1.3448 13 6 5.9995 -3.2941 -0.5272 14 1 5.9470 -4.3523 -0.2712 15 7 7.2943 -2.9085 -1.0939 16 6 8.0582 -3.8281 -1.7162 17 8 7.6739 -4.9749 -1.8066 18 6 9.3903 -3.4318 -2.2987 19 6 10.0487 -4.6530 -2.9436 20 6 11.4015 -4.2507 -3.5344 21 6 12.0596 -5.4718 -4.1798 22 9 11.2343 -5.9635 -5.1967 23 9 13.2968 -5.1041 -4.7195 24 9 12.2499 -6.4646 -3.2126 25 6 5.5185 -2.3677 0.5902 26 6 6.1777 -1.0090 0.8296 27 6 5.7878 -1.1778 2.3094 28 6 5.7844 -2.6969 2.0596 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 5.0110 -1.9139 -1.9480 32 1 4.2947 -3.5828 -1.9095 33 1 7.6018 -1.9914 -1.0213 34 1 10.0333 -3.0476 -1.5068 35 1 9.2416 -2.6590 -3.0528 36 1 9.4056 -5.0368 -3.7355 37 1 10.1974 -5.4261 -2.1896 38 1 11.2532 -3.4774 -4.2882 39 1 12.0444 -3.8672 -2.7422 40 1 7.2541 -1.0087 0.6582 41 1 5.6682 -0.1822 0.3346 42 1 4.8047 -0.7733 2.5501 43 1 6.5618 -0.8519 3.0042 44 1 4.9608 -3.2186 2.5470 45 1 6.7503 -3.1710 2.2338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203425465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:13 Heat of formation + Delta-G solvation = -150.028776 kcal Electronic energy + Delta-G solvation = -28910.668452 eV Core-core repulsion = 24321.278153 eV Total energy + Delta-G solvation = -4589.390299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 5.80 seconds Orbital eigenvalues (eV) -50.44155 -47.95399 -47.90467 -40.78327 -39.24345 -35.46663 -34.95904 -34.27074 -32.55879 -30.67714 -29.80425 -25.70226 -25.47782 -24.30612 -24.18743 -22.44677 -21.57376 -20.61889 -20.32534 -18.90721 -18.67757 -18.47236 -18.05574 -17.19129 -16.74336 -16.33939 -16.19483 -15.23295 -14.95408 -14.90450 -14.82191 -14.54969 -14.37393 -14.23546 -14.08306 -14.04652 -13.94188 -13.32866 -13.08415 -12.87070 -12.74365 -12.51082 -12.25239 -12.21145 -11.99972 -11.87160 -11.83045 -11.58384 -11.31370 -11.11784 -10.92240 -10.86977 -10.29791 -10.13812 -10.07346 -9.94194 -9.73497 -9.55384 -8.93340 -8.78859 -7.32847 -5.83490 -3.19383 2.38259 2.56317 3.08329 3.29048 3.31833 3.38914 3.44830 3.66090 3.66350 4.35201 4.45420 4.51405 4.57759 4.61422 4.73794 4.84040 4.87211 4.91693 4.94478 5.04827 5.09079 5.16945 5.30221 5.48878 5.54992 5.59421 5.74440 5.75982 5.78274 5.81321 5.89531 6.08659 6.13604 6.20462 6.25309 6.45904 6.47349 6.65461 6.73119 6.89159 7.50811 7.93201 8.18638 8.36097 9.13356 9.85417 10.05030 11.34659 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.002146 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.140106 B =13043.609040 C =13292.131776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.881 3.119 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.730 5.730 10 C 0.199 3.801 11 H 0.090 0.910 12 C -0.174 4.174 13 C 0.132 3.868 14 H 0.112 0.888 15 N -0.713 5.713 16 C 0.510 3.490 17 O -0.542 6.542 18 C -0.139 4.139 19 C -0.110 4.110 20 C -0.167 4.167 21 C 0.452 3.548 22 F -0.182 7.182 23 F -0.187 7.187 24 F -0.183 7.183 25 C -0.123 4.123 26 C -0.119 4.119 27 C -0.133 4.133 28 C -0.124 4.124 29 H 0.260 0.740 30 H 0.363 0.637 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.398 0.602 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.374 -5.711 -3.835 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.711 3.289 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.087 3.913 11 H 0.108 0.892 12 C -0.216 4.216 13 C 0.027 3.973 14 H 0.130 0.870 15 N -0.363 5.363 16 C 0.296 3.704 17 O -0.419 6.419 18 C -0.179 4.179 19 C -0.148 4.148 20 C -0.205 4.205 21 C 0.398 3.602 22 F -0.164 7.164 23 F -0.169 7.169 24 F -0.165 7.165 25 C -0.125 4.125 26 C -0.157 4.157 27 C -0.170 4.170 28 C -0.162 4.162 29 H 0.070 0.930 30 H 0.197 0.803 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 25.810 -6.602 -3.898 26.925 hybrid contribution 0.868 1.603 -0.184 1.832 sum 26.678 -4.999 -4.083 27.447 Atomic orbital electron populations 1.69695 1.05091 1.25859 1.57165 1.24684 0.95222 0.97146 1.01930 0.86616 0.79275 0.85218 0.77790 1.21097 1.21668 1.20238 1.19130 0.80536 0.94806 1.43227 0.89036 1.42679 1.03955 1.01820 1.88574 1.21075 0.87901 0.90320 0.92013 0.89215 1.24266 0.96323 1.00985 1.00028 1.22270 0.81053 0.99408 0.94599 0.87044 1.46005 1.20347 1.12461 1.57494 1.20532 0.86023 0.85660 0.78179 1.90719 1.73558 1.19458 1.58163 1.21604 0.94867 0.99569 1.01869 1.21336 0.93224 0.98252 1.01998 1.22922 0.99452 0.94723 1.03416 1.20596 0.76751 0.85946 0.76939 1.93201 1.71987 1.89469 1.61721 1.93189 1.45226 1.91482 1.86999 1.93197 1.95268 1.64858 1.63133 1.23630 0.99396 0.95877 0.93643 1.22461 0.99006 0.96632 0.97553 1.22755 1.02092 0.96546 0.95632 1.22689 1.01238 0.96597 0.95636 0.92992 0.80255 0.90334 0.91627 0.76681 0.88595 0.88495 0.89567 0.89648 0.87109 0.87155 0.90761 0.91139 0.89328 0.92249 0.91124 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.57 13.97 55.49 0.78 -27.79 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 21.22 27.73 -169.99 -4.71 16.51 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 7 C -0.25 -6.67 10.45 -15.06 -0.16 -6.83 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 N -0.73 -16.07 5.13 -52.89 -0.27 -16.34 16 10 C 0.20 3.57 4.36 -67.38 -0.29 3.27 16 11 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 12 C -0.17 -2.80 7.70 -25.64 -0.20 -3.00 16 13 C 0.13 1.79 4.09 -67.48 -0.28 1.51 16 14 H 0.11 1.65 7.50 -51.93 -0.39 1.26 16 15 N -0.71 -7.74 5.27 -53.37 -0.28 -8.02 16 16 C 0.51 5.71 7.83 -10.99 -0.09 5.62 16 17 O -0.54 -8.37 15.60 5.56 0.09 -8.28 16 18 C -0.14 -0.90 5.70 -27.89 -0.16 -1.06 16 19 C -0.11 -0.78 4.26 -26.73 -0.11 -0.90 16 20 C -0.17 -0.80 5.26 -26.73 -0.14 -0.94 16 21 C 0.45 3.37 3.16 37.16 0.12 3.49 16 22 F -0.18 -1.66 16.80 2.25 0.04 -1.62 16 23 F -0.19 -1.49 17.32 2.25 0.04 -1.45 16 24 F -0.18 -1.63 16.80 2.25 0.04 -1.59 16 25 C -0.12 -1.73 1.07 -154.71 -0.16 -1.89 16 26 C -0.12 -1.53 6.78 -26.28 -0.18 -1.71 16 27 C -0.13 -1.78 8.08 -25.75 -0.21 -1.99 16 28 C -0.12 -1.61 7.84 -26.28 -0.21 -1.82 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.36 7.81 3.78 -40.82 -0.15 7.65 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.40 3.42 6.98 -40.82 -0.28 3.14 16 34 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.75 7.76 -51.93 -0.40 0.35 16 37 H 0.08 0.72 7.76 -51.93 -0.40 0.32 16 38 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.75 6.99 -51.93 -0.36 0.38 16 41 H 0.07 1.04 6.42 -51.93 -0.33 0.71 16 42 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -32.50 374.53 -7.38 -39.88 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.57 Total: 9.22 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.16 Total: -6.15 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.22 Total: -52.15 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.09 Total: -8.28 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.11 Total: -4.66 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.50 -7.38 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203425465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.147 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.81 seconds