Wall clock time and date at job start Tue Mar 31 2020 21:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00126 * 2 1 4 4 H 1.48504 * 109.47207 * 269.99924 * 3 2 1 5 5 H 1.48497 * 109.47164 * 29.99845 * 3 2 1 6 6 H 1.48501 * 109.47039 * 149.99945 * 3 2 1 7 7 C 1.38818 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99850 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00097 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00088 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.88463 * 336.34979 * 10 9 7 12 12 C 1.54147 * 113.80144 * 107.70593 * 10 9 7 13 13 C 1.53946 * 87.22553 * 139.16707 * 12 10 9 14 14 H 1.09000 * 113.66566 * 89.86404 * 13 12 10 15 15 N 1.46505 * 113.66022 * 220.82726 * 13 12 10 16 16 C 1.34777 * 120.00115 * 253.98525 * 15 13 12 17 17 O 1.21282 * 119.99620 * 359.97438 * 16 15 13 18 18 C 1.50697 * 120.00369 * 180.02562 * 16 15 13 19 19 C 1.52997 * 109.47466 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47060 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.46886 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47517 * 59.99549 * 21 20 19 23 23 F 1.39901 * 109.47059 * 180.02562 * 21 20 19 24 24 F 1.39904 * 109.46640 * 299.99483 * 21 20 19 25 25 C 1.52903 * 86.88499 * 335.34247 * 13 12 10 26 26 C 1.52913 * 121.14013 * 259.13682 * 25 13 12 27 27 C 1.53954 * 86.77973 * 209.37737 * 26 25 13 28 28 C 1.52910 * 121.14003 * 150.56809 * 25 13 12 29 29 H 0.96998 * 119.99920 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99929 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.58427 * 24.59243 * 12 10 9 32 32 H 1.09002 * 113.64021 * 253.74729 * 12 10 9 33 33 H 0.97003 * 120.00244 * 73.98555 * 15 13 12 34 34 H 1.09002 * 109.47120 * 59.99760 * 18 16 15 35 35 H 1.08998 * 109.46862 * 300.00562 * 18 16 15 36 36 H 1.09002 * 109.47153 * 59.99773 * 19 18 16 37 37 H 1.09001 * 109.46832 * 299.99964 * 19 18 16 38 38 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 39 39 H 1.08992 * 109.47399 * 59.99823 * 20 19 18 40 40 H 1.08996 * 113.66154 * 323.84583 * 26 25 13 41 41 H 1.09003 * 113.66159 * 94.90999 * 26 25 13 42 42 H 1.08995 * 113.58158 * 270.12694 * 27 26 25 43 43 H 1.09007 * 113.57765 * 139.33835 * 27 26 25 44 44 H 1.08995 * 113.66623 * 265.10120 * 28 25 13 45 45 H 1.09009 * 113.65899 * 36.15590 * 28 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5276 -3.2979 0.4022 12 6 4.7941 -2.7955 -1.3448 13 6 5.9995 -3.2941 -0.5272 14 1 5.9470 -4.3523 -0.2712 15 7 7.2943 -2.9085 -1.0939 16 6 8.0582 -3.8281 -1.7162 17 8 7.6739 -4.9749 -1.8066 18 6 9.3903 -3.4318 -2.2987 19 6 10.0487 -4.6530 -2.9436 20 6 11.4015 -4.2507 -3.5344 21 6 12.0596 -5.4718 -4.1798 22 9 11.2343 -5.9635 -5.1967 23 9 13.2968 -5.1041 -4.7195 24 9 12.2499 -6.4646 -3.2126 25 6 5.5185 -2.3677 0.5902 26 6 6.1777 -1.0090 0.8296 27 6 5.7878 -1.1778 2.3094 28 6 5.7844 -2.6969 2.0596 29 1 -0.4850 0.8400 0.0004 30 1 3.8646 -0.3622 -0.0007 31 1 5.0110 -1.9139 -1.9480 32 1 4.2947 -3.5828 -1.9095 33 1 7.6018 -1.9914 -1.0213 34 1 10.0333 -3.0476 -1.5068 35 1 9.2416 -2.6590 -3.0528 36 1 9.4056 -5.0368 -3.7355 37 1 10.1974 -5.4261 -2.1896 38 1 11.2532 -3.4774 -4.2882 39 1 12.0444 -3.8672 -2.7422 40 1 7.2541 -1.0087 0.6582 41 1 5.6682 -0.1822 0.3346 42 1 4.8047 -0.7733 2.5501 43 1 6.5618 -0.8519 3.0042 44 1 4.9608 -3.2186 2.5470 45 1 6.7503 -3.1710 2.2338 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203425465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:10 Heat of formation + Delta-G solvation = -170.981652 kcal Electronic energy + Delta-G solvation = -28911.577037 eV Core-core repulsion = 24321.278153 eV Total energy + Delta-G solvation = -4590.298884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -51.04038 -48.55073 -48.53783 -41.93602 -40.20578 -36.37038 -36.02114 -35.63130 -34.05351 -32.42299 -30.48469 -26.82327 -26.63768 -25.60268 -25.27269 -23.53662 -22.51951 -21.81152 -21.23560 -20.20717 -19.49751 -19.26984 -18.91289 -18.38435 -17.59598 -17.49122 -16.85390 -16.55176 -16.33983 -15.91893 -15.62877 -15.45496 -15.34568 -15.00899 -14.90871 -14.70799 -14.68644 -14.63240 -14.52822 -13.86787 -13.74682 -13.62578 -13.46747 -13.17112 -13.01946 -12.93708 -12.79009 -12.74316 -12.44556 -12.32819 -12.14896 -12.02135 -11.84226 -11.78846 -11.38063 -11.24440 -11.05749 -10.78681 -10.70719 -9.85469 -9.25583 -8.01951 -5.35046 1.35648 1.40706 1.48001 1.72310 1.86187 2.27036 2.48272 2.94199 3.10106 3.15996 3.27276 3.45317 3.52088 3.71364 3.76635 3.83173 3.92650 4.01641 4.02692 4.08355 4.17999 4.34819 4.53390 4.55136 4.59397 4.64835 4.72621 4.76339 4.81187 4.85560 5.00263 5.06772 5.08883 5.11292 5.16977 5.24676 5.35219 5.46813 5.60923 5.68798 5.79001 6.22675 6.67432 7.08237 7.36513 7.83936 8.05015 9.19745 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.022179 B = 0.002146 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.140106 B =13043.609040 C =13292.131776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.231 4.231 8 H 0.053 0.947 9 N -0.730 5.730 10 C 0.176 3.824 11 H 0.069 0.931 12 C -0.170 4.170 13 C 0.151 3.849 14 H 0.098 0.902 15 N -0.702 5.702 16 C 0.505 3.495 17 O -0.592 6.592 18 C -0.128 4.128 19 C -0.110 4.110 20 C -0.154 4.154 21 C 0.444 3.556 22 F -0.197 7.197 23 F -0.191 7.191 24 F -0.195 7.195 25 C -0.112 4.112 26 C -0.110 4.110 27 C -0.135 4.135 28 C -0.119 4.119 29 H 0.257 0.743 30 H 0.369 0.631 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.415 0.585 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.838 -3.661 -3.631 31.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.780 3.220 4 H -0.205 1.205 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.362 4.362 8 H 0.071 0.929 9 N -0.372 5.372 10 C 0.066 3.934 11 H 0.087 0.913 12 C -0.212 4.212 13 C 0.045 3.955 14 H 0.116 0.884 15 N -0.353 5.353 16 C 0.293 3.707 17 O -0.472 6.472 18 C -0.167 4.167 19 C -0.148 4.148 20 C -0.191 4.191 21 C 0.390 3.610 22 F -0.178 7.178 23 F -0.172 7.172 24 F -0.177 7.177 25 C -0.115 4.115 26 C -0.148 4.148 27 C -0.172 4.172 28 C -0.157 4.157 29 H 0.066 0.934 30 H 0.205 0.795 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.252 0.748 34 H 0.151 0.849 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.135 0.865 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 30.361 -4.562 -3.695 30.924 hybrid contribution -0.553 0.769 -0.271 0.985 sum 29.809 -3.794 -3.965 30.309 Atomic orbital electron populations 1.69896 1.07276 1.26632 1.59763 1.25535 0.96112 1.01355 1.02751 0.85450 0.78975 0.79497 0.78123 1.20486 1.22518 1.16795 1.19066 0.82833 0.93288 1.41039 0.92939 1.42554 1.02078 1.03604 1.88969 1.21316 0.89657 0.88193 0.94274 0.91286 1.24141 0.97478 1.00696 0.98881 1.21780 0.81791 0.98556 0.93415 0.88357 1.45841 1.18976 1.13414 1.57119 1.21449 0.87324 0.84766 0.77124 1.90714 1.74906 1.21720 1.59855 1.21646 0.92051 0.99611 1.03389 1.21260 0.94269 0.98380 1.00935 1.22938 0.98040 0.93548 1.04598 1.21131 0.76677 0.86615 0.76569 1.93173 1.72381 1.89821 1.62464 1.93180 1.45515 1.91424 1.87087 1.93172 1.95341 1.65694 1.63497 1.23363 0.95976 0.97558 0.94578 1.22564 1.01188 0.94464 0.96578 1.22709 1.01335 0.96360 0.96829 1.22724 1.02051 0.96751 0.94147 0.93429 0.79514 0.90057 0.93172 0.74752 0.84915 0.85612 0.91972 0.91496 0.84710 0.84346 0.86491 0.92593 0.92562 0.89444 0.92638 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.94 13.97 21.65 0.30 -62.63 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.95 43.94 27.73 68.60 1.90 45.85 16 4 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.24 -9.79 6.52 99.48 0.65 -9.15 16 7 C -0.23 -12.94 10.45 84.04 0.88 -12.06 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 9 N -0.73 -32.29 5.13 -321.24 -1.65 -33.94 16 10 C 0.18 6.38 4.36 45.35 0.20 6.57 16 11 H 0.07 2.74 8.10 -2.39 -0.02 2.72 16 12 C -0.17 -5.43 7.70 31.30 0.24 -5.19 16 13 C 0.15 3.85 4.09 45.28 0.19 4.04 16 14 H 0.10 2.85 7.50 -2.39 -0.02 2.83 16 15 N -0.70 -12.71 5.27 -441.16 -2.33 -15.04 16 16 C 0.50 9.83 7.83 87.66 0.69 10.52 16 17 O -0.59 -17.79 15.60 -3.04 -0.05 -17.83 16 18 C -0.13 -1.06 5.70 29.85 0.17 -0.89 16 19 C -0.11 -1.29 4.26 30.59 0.13 -1.16 16 20 C -0.15 -0.91 5.26 30.59 0.16 -0.75 16 21 C 0.44 5.87 3.16 71.98 0.23 6.10 16 22 F -0.20 -3.45 16.80 44.97 0.76 -2.69 16 23 F -0.19 -2.67 17.32 44.97 0.78 -1.89 16 24 F -0.20 -3.29 16.80 44.97 0.76 -2.54 16 25 C -0.11 -2.94 1.07 -52.31 -0.06 -2.99 16 26 C -0.11 -2.40 6.78 30.89 0.21 -2.19 16 27 C -0.13 -3.19 8.08 31.23 0.25 -2.94 16 28 C -0.12 -2.81 7.84 30.88 0.24 -2.57 16 29 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.37 15.34 3.78 -92.71 -0.35 14.99 16 31 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.41 4.89 6.98 -92.71 -0.65 4.24 16 34 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.06 1.03 7.76 -2.39 -0.02 1.01 16 37 H 0.07 1.03 7.76 -2.39 -0.02 1.01 16 38 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.12 1.59 6.99 -2.39 -0.02 1.57 16 41 H 0.06 1.43 6.42 -2.39 -0.02 1.41 16 42 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -76.76 374.53 4.43 -72.33 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.03 Total: 25.29 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 3.99 Total: -6.90 kcal Atomic # 7 Polarization: -107.94 SS G_CDS: -3.67 Total: -111.61 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.05 Total: -17.83 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 2.29 Total: -7.12 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.85 kcal Total: -76.76 4.43 -72.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203425465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.653 kcal (2) G-P(sol) polarization free energy of solvation -76.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds