Wall clock time and date at job start Tue Mar 31 2020 20:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00004 * 2 1 4 4 H 1.48495 * 109.47382 * 239.99759 * 3 2 1 5 5 H 1.48503 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47167 * 119.99552 * 3 2 1 7 7 C 1.38810 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00204 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47516 * 179.97438 * 10 9 7 12 12 C 1.53039 * 109.46165 * 174.99898 * 11 10 9 13 13 C 1.53199 * 109.31182 * 181.37198 * 12 11 10 14 14 N 1.46922 * 108.77570 * 305.36303 * 13 12 11 15 15 C 1.34776 * 120.63323 * 233.58341 * 14 13 12 16 16 O 1.21695 * 119.99525 * 354.03410 * 15 14 13 17 17 C 1.46652 * 119.99969 * 174.30467 * 15 14 13 18 18 O 1.35390 * 126.12152 * 352.01700 * 17 15 14 19 19 C 1.34404 * 109.48179 * 179.84378 * 18 17 15 20 20 C 1.33902 * 108.55266 * 0.37456 * 19 18 17 21 21 C 1.35188 * 126.11896 * 172.33044 * 17 15 14 22 22 C 1.50722 * 130.57455 * 0.16095 * 21 17 15 23 23 C 1.53678 * 107.44155 * 164.17018 * 22 21 17 24 24 O 1.42902 * 109.97717 * 48.24659 * 23 22 21 25 25 C 1.43505 * 114.77419 * 287.63568 * 24 23 22 26 26 C 1.46930 * 118.73627 * 53.86125 * 14 13 12 27 27 C 1.53042 * 109.45021 * 295.06177 * 11 10 9 28 28 H 0.96999 * 120.00531 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99706 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47153 * 59.99561 * 10 9 7 31 31 H 1.09003 * 109.46738 * 300.00334 * 10 9 7 32 32 H 1.09000 * 109.45803 * 55.02434 * 11 10 9 33 33 H 1.08994 * 109.49749 * 61.42308 * 12 11 10 34 34 H 1.09001 * 109.50030 * 301.32178 * 12 11 10 35 35 H 1.09000 * 109.58389 * 185.57983 * 13 12 11 36 36 H 1.09006 * 109.69966 * 65.22277 * 13 12 11 37 37 H 1.07994 * 125.72455 * 180.12282 * 19 18 17 38 38 H 1.08995 * 109.86839 * 283.65574 * 22 21 17 39 39 H 1.09000 * 109.86094 * 44.62043 * 22 21 17 40 40 H 1.08991 * 109.38906 * 168.40538 * 23 22 21 41 41 H 1.09001 * 109.38720 * 288.19825 * 23 22 21 42 42 H 1.09001 * 109.82755 * 171.04251 * 25 24 23 43 43 H 1.09006 * 109.82790 * 291.91062 * 25 24 23 44 44 H 1.09000 * 109.58513 * 65.92631 * 26 14 13 45 45 H 1.09004 * 109.58523 * 186.35006 * 26 14 13 46 46 H 1.08999 * 109.49281 * 298.57204 * 27 11 10 47 47 H 1.09003 * 109.49681 * 58.66272 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8252 -6.1413 -0.1246 13 6 0.8247 -7.3011 -0.1581 14 7 -0.0406 -7.2135 1.0260 15 6 -0.1820 -8.2684 1.8528 16 8 0.3217 -9.3384 1.5655 17 6 -0.9476 -8.1285 3.0957 18 8 -1.4330 -6.9732 3.6084 19 6 -2.0841 -7.2306 4.7557 20 6 -2.0183 -8.5460 4.9971 21 6 -1.2900 -9.1292 3.9377 22 6 -1.0072 -10.6081 3.8691 23 6 -1.2783 -11.1941 5.2637 24 8 -2.5432 -10.7379 5.7475 25 6 -2.5751 -9.3576 6.1389 26 6 -0.7537 -5.9560 1.2884 27 6 0.2686 -4.8096 1.3087 28 1 -0.4851 0.8400 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6848 -3.7145 0.8905 31 1 2.6847 -3.7144 -0.8895 32 1 0.3798 -4.7131 -0.8407 33 1 2.4913 -6.2602 0.7298 34 1 2.4097 -6.1384 -1.0447 35 1 1.3633 -8.2486 -0.1478 36 1 0.2169 -7.2360 -1.0606 37 1 -2.5743 -6.4986 5.3803 38 1 -1.6638 -11.0772 3.1363 39 1 0.0341 -10.7736 3.5927 40 1 -1.2848 -12.2823 5.2038 41 1 -0.4936 -10.8742 5.9493 42 1 -3.6023 -9.0545 6.3415 43 1 -1.9642 -9.2117 7.0298 44 1 -1.4874 -5.7810 0.5015 45 1 -1.2570 -6.0158 2.2534 46 1 0.9496 -4.9409 2.1496 47 1 -0.2547 -3.8586 1.4089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205767412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:14 Heat of formation + Delta-G solvation = -45.551408 kcal Electronic energy + Delta-G solvation = -29159.817674 eV Core-core repulsion = 25116.814594 eV Total energy + Delta-G solvation = -4043.003080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -43.16034 -40.02369 -38.88220 -37.77370 -35.04690 -33.88492 -32.94225 -32.37772 -31.21053 -30.34719 -29.45657 -26.77534 -26.60815 -24.52610 -23.67090 -23.24115 -22.79104 -21.36173 -20.36878 -19.95000 -19.30740 -17.71884 -17.13812 -16.80955 -16.65702 -16.45755 -15.95828 -15.64998 -15.25033 -15.04997 -14.71983 -14.34141 -14.20834 -13.84096 -13.73854 -13.63512 -13.41903 -13.20723 -12.98371 -12.83581 -12.60369 -12.34039 -12.05757 -11.85989 -11.80247 -11.26147 -11.14449 -11.00330 -10.83443 -10.50936 -10.44211 -10.32499 -10.15490 -10.06813 -9.97176 -9.71949 -9.66014 -8.99843 -8.87721 -8.61603 -6.92642 -5.77877 -3.05993 0.84235 1.94367 2.36097 2.92612 3.02363 3.42462 3.43029 3.47425 3.48361 4.12560 4.20006 4.47293 4.57702 4.61519 4.83006 4.88263 4.94161 4.98384 5.00582 5.05625 5.11499 5.18207 5.27860 5.35380 5.42936 5.48989 5.54565 5.61389 5.62385 5.68725 5.74646 5.90982 5.92514 5.96739 6.02994 6.13050 6.16825 6.26827 6.41902 6.45803 6.58203 6.62166 6.76637 6.79324 6.90795 7.23619 7.68710 7.89479 8.41537 9.52578 10.10716 10.45502 11.45083 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.002455 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.044332 B =11400.292318 C =12473.131900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.095 4.095 12 C -0.126 4.126 13 C 0.114 3.886 14 N -0.597 5.597 15 C 0.601 3.399 16 O -0.528 6.528 17 C -0.062 4.062 18 O -0.155 6.155 19 C 0.010 3.990 20 C -0.240 4.240 21 C -0.085 4.085 22 C -0.087 4.087 23 C 0.063 3.937 24 O -0.380 6.380 25 C 0.136 3.864 26 C 0.089 3.911 27 C -0.121 4.121 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.018 0.982 31 H 0.019 0.981 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.211 0.789 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 -21.559 10.275 24.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.114 4.114 12 C -0.165 4.165 13 C -0.008 4.008 14 N -0.328 5.328 15 C 0.389 3.611 16 O -0.407 6.407 17 C -0.112 4.112 18 O -0.053 6.053 19 C -0.059 4.059 20 C -0.242 4.242 21 C -0.088 4.088 22 C -0.124 4.124 23 C -0.014 4.014 24 O -0.298 6.298 25 C 0.059 3.941 26 C -0.032 4.032 27 C -0.159 4.159 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.228 0.772 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.072 0.928 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.124 0.876 46 H 0.082 0.918 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.951 -21.831 9.960 24.502 hybrid contribution 0.302 1.407 0.046 1.439 sum -4.649 -20.425 10.007 23.215 Atomic orbital electron populations 1.69635 1.05082 1.25747 1.57894 1.24722 0.95527 0.97648 1.03104 0.86270 0.78526 0.83565 0.77845 1.21299 1.21690 1.21307 1.19190 0.91005 0.84238 1.42567 0.91325 1.42367 1.05810 0.99965 1.89475 1.20663 0.93141 0.85362 0.97747 1.21331 0.97896 0.94410 0.97780 1.21925 0.97667 0.94016 1.02856 1.21711 0.92346 1.00250 0.86451 1.48067 1.46044 1.13046 1.25678 1.16664 0.79418 0.84108 0.80907 1.90828 1.49456 1.26420 1.73974 1.21392 1.07107 0.84031 0.98704 1.84527 1.56055 1.32260 1.32424 1.23844 0.97548 0.96595 0.87898 1.20984 1.07041 0.94775 1.01394 1.20166 0.98278 0.96714 0.93667 1.20889 1.03882 0.89067 0.98579 1.22699 0.85635 0.99533 0.93529 1.87977 1.32953 1.25082 1.83811 1.21038 1.01346 0.79732 0.91958 1.22530 0.94929 0.82686 1.03086 1.21970 0.97797 0.98083 0.98082 0.93486 0.78270 0.96449 0.96338 0.90906 0.91522 0.90364 0.89056 0.91095 0.77231 0.89289 0.88312 0.88078 0.92753 0.87583 0.91494 0.90910 0.87575 0.91778 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.19 5.32 -59.91 -0.32 -18.51 16 10 C 0.16 3.13 5.65 -4.05 -0.02 3.11 16 11 C -0.10 -1.48 2.19 -90.58 -0.20 -1.68 16 12 C -0.13 -1.63 5.36 -26.61 -0.14 -1.77 16 13 C 0.11 1.40 6.41 -3.71 -0.02 1.38 16 14 N -0.60 -7.97 2.97 -174.05 -0.52 -8.48 16 15 C 0.60 8.61 7.65 -12.87 -0.10 8.51 16 16 O -0.53 -8.41 15.03 5.19 0.08 -8.33 16 17 C -0.06 -0.80 6.80 -37.27 -0.25 -1.06 16 18 O -0.16 -1.81 7.20 2.33 0.02 -1.80 16 19 C 0.01 0.09 12.06 29.21 0.35 0.44 16 20 C -0.24 -2.36 6.04 -105.01 -0.63 -2.99 16 21 C -0.09 -1.01 6.02 -104.59 -0.63 -1.64 16 22 C -0.09 -0.90 5.79 -27.52 -0.16 -1.06 16 23 C 0.06 0.52 6.75 37.51 0.25 0.78 16 24 O -0.38 -3.71 10.70 -35.23 -0.38 -4.09 16 25 C 0.14 1.05 7.27 36.03 0.26 1.32 16 26 C 0.09 1.15 6.35 -3.49 -0.02 1.13 16 27 C -0.12 -1.82 5.26 -26.39 -0.14 -1.96 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.38 9.88 6.84 -40.82 -0.28 9.60 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.13 7.04 -51.93 -0.37 0.76 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.21 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.05 7.52 -51.93 -0.39 0.66 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.11 1.33 3.81 -54.88 -0.21 1.12 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 1.52 7.15 -51.93 -0.37 1.15 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -33.25 372.58 -8.58 -41.83 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -7.08 Total: 6.45 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.70 Total: -2.80 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.11 Total: -54.18 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.28 Total: -14.21 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.25 -8.58 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205767412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.722 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds