Wall clock time and date at job start Tue Mar 31 2020 20:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 120.00004 * 2 1 4 4 H 1.48495 * 109.47382 * 239.99759 * 3 2 1 5 5 H 1.48503 * 109.46854 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47167 * 119.99552 * 3 2 1 7 7 C 1.38810 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00239 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00204 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47516 * 179.97438 * 10 9 7 12 12 C 1.53039 * 109.46165 * 174.99898 * 11 10 9 13 13 C 1.53199 * 109.31182 * 181.37198 * 12 11 10 14 14 N 1.46922 * 108.77570 * 305.36303 * 13 12 11 15 15 C 1.34776 * 120.63323 * 233.58341 * 14 13 12 16 16 O 1.21695 * 119.99525 * 354.03410 * 15 14 13 17 17 C 1.46652 * 119.99969 * 174.30467 * 15 14 13 18 18 O 1.35390 * 126.12152 * 352.01700 * 17 15 14 19 19 C 1.34404 * 109.48179 * 179.84378 * 18 17 15 20 20 C 1.33902 * 108.55266 * 0.37456 * 19 18 17 21 21 C 1.35188 * 126.11896 * 172.33044 * 17 15 14 22 22 C 1.50722 * 130.57455 * 0.16095 * 21 17 15 23 23 C 1.53678 * 107.44155 * 164.17018 * 22 21 17 24 24 O 1.42902 * 109.97717 * 48.24659 * 23 22 21 25 25 C 1.43505 * 114.77419 * 287.63568 * 24 23 22 26 26 C 1.46930 * 118.73627 * 53.86125 * 14 13 12 27 27 C 1.53042 * 109.45021 * 295.06177 * 11 10 9 28 28 H 0.96999 * 120.00531 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99706 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.47153 * 59.99561 * 10 9 7 31 31 H 1.09003 * 109.46738 * 300.00334 * 10 9 7 32 32 H 1.09000 * 109.45803 * 55.02434 * 11 10 9 33 33 H 1.08994 * 109.49749 * 61.42308 * 12 11 10 34 34 H 1.09001 * 109.50030 * 301.32178 * 12 11 10 35 35 H 1.09000 * 109.58389 * 185.57983 * 13 12 11 36 36 H 1.09006 * 109.69966 * 65.22277 * 13 12 11 37 37 H 1.07994 * 125.72455 * 180.12282 * 19 18 17 38 38 H 1.08995 * 109.86839 * 283.65574 * 22 21 17 39 39 H 1.09000 * 109.86094 * 44.62043 * 22 21 17 40 40 H 1.08991 * 109.38906 * 168.40538 * 23 22 21 41 41 H 1.09001 * 109.38720 * 288.19825 * 23 22 21 42 42 H 1.09001 * 109.82755 * 171.04251 * 25 24 23 43 43 H 1.09006 * 109.82790 * 291.91062 * 25 24 23 44 44 H 1.09000 * 109.58513 * 65.92631 * 26 14 13 45 45 H 1.09004 * 109.58523 * 186.35006 * 26 14 13 46 46 H 1.08999 * 109.49281 * 298.57204 * 27 11 10 47 47 H 1.09003 * 109.49681 * 58.66272 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 6 1.8252 -6.1413 -0.1246 13 6 0.8247 -7.3011 -0.1581 14 7 -0.0406 -7.2135 1.0260 15 6 -0.1820 -8.2684 1.8528 16 8 0.3217 -9.3384 1.5655 17 6 -0.9476 -8.1285 3.0957 18 8 -1.4330 -6.9732 3.6084 19 6 -2.0841 -7.2306 4.7557 20 6 -2.0183 -8.5460 4.9971 21 6 -1.2900 -9.1292 3.9377 22 6 -1.0072 -10.6081 3.8691 23 6 -1.2783 -11.1941 5.2637 24 8 -2.5432 -10.7379 5.7475 25 6 -2.5751 -9.3576 6.1389 26 6 -0.7537 -5.9560 1.2884 27 6 0.2686 -4.8096 1.3087 28 1 -0.4851 0.8400 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 2.6848 -3.7145 0.8905 31 1 2.6847 -3.7144 -0.8895 32 1 0.3798 -4.7131 -0.8407 33 1 2.4913 -6.2602 0.7298 34 1 2.4097 -6.1384 -1.0447 35 1 1.3633 -8.2486 -0.1478 36 1 0.2169 -7.2360 -1.0606 37 1 -2.5743 -6.4986 5.3803 38 1 -1.6638 -11.0772 3.1363 39 1 0.0341 -10.7736 3.5927 40 1 -1.2848 -12.2823 5.2038 41 1 -0.4936 -10.8742 5.9493 42 1 -3.6023 -9.0545 6.3415 43 1 -1.9642 -9.2117 7.0298 44 1 -1.4874 -5.7810 0.5015 45 1 -1.2570 -6.0158 2.2534 46 1 0.9496 -4.9409 2.1496 47 1 -0.2547 -3.8586 1.4089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205767412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:51 Heat of formation + Delta-G solvation = -67.012223 kcal Electronic energy + Delta-G solvation = -29160.748285 eV Core-core repulsion = 25116.814594 eV Total energy + Delta-G solvation = -4043.933691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 27.25 seconds Orbital eigenvalues (eV) -43.98071 -41.10530 -39.58092 -38.98878 -36.63743 -34.82849 -34.41271 -33.21251 -32.46493 -31.94177 -30.37130 -28.24434 -27.26764 -25.90983 -24.77599 -24.37877 -24.00321 -22.64454 -21.46899 -20.78610 -20.37275 -19.15811 -18.60147 -17.67541 -17.59585 -17.24660 -16.89161 -16.67071 -16.38904 -16.09005 -15.91341 -15.63288 -15.46104 -15.31916 -15.16566 -14.62911 -14.41872 -14.27241 -14.11191 -13.92655 -13.67198 -13.61889 -13.14614 -13.09540 -12.91751 -12.72525 -12.59111 -12.26522 -12.17882 -11.96482 -11.93382 -11.72107 -11.57994 -11.36904 -11.21196 -10.90894 -10.81878 -10.51640 -9.94730 -9.56666 -8.98395 -7.94694 -5.22807 -0.06032 1.18977 1.47351 1.48838 1.49894 1.56054 1.92660 2.04808 2.56258 2.81293 3.32238 3.38207 3.38994 3.71611 3.73360 3.81346 3.84793 3.92721 4.05139 4.18143 4.23094 4.26296 4.31186 4.33787 4.45170 4.50209 4.54164 4.66331 4.70659 4.72773 4.79310 4.80945 4.85903 4.91384 4.95042 5.00088 5.04974 5.13380 5.15506 5.22230 5.29520 5.45283 5.51548 5.53190 5.76521 6.12942 6.19219 6.27982 6.83988 7.34660 8.10678 8.35009 9.28496 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019671 B = 0.002455 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.044332 B =11400.292318 C =12473.131900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.742 5.742 10 C 0.158 3.842 11 C -0.085 4.085 12 C -0.115 4.115 13 C 0.115 3.885 14 N -0.598 5.598 15 C 0.597 3.403 16 O -0.552 6.552 17 C -0.094 4.094 18 O -0.167 6.167 19 C 0.024 3.976 20 C -0.252 4.252 21 C -0.093 4.093 22 C -0.088 4.088 23 C 0.066 3.934 24 O -0.396 6.396 25 C 0.133 3.867 26 C 0.097 3.903 27 C -0.112 4.112 28 H 0.252 0.748 29 H 0.376 0.624 30 H 0.013 0.987 31 H 0.021 0.979 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.253 0.747 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.062 0.938 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.115 0.885 46 H 0.055 0.945 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 -21.989 11.335 25.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.090 0.910 9 N -0.385 5.385 10 C 0.031 3.969 11 C -0.104 4.104 12 C -0.154 4.154 13 C -0.006 4.006 14 N -0.329 5.329 15 C 0.387 3.613 16 O -0.434 6.434 17 C -0.144 4.144 18 O -0.065 6.065 19 C -0.044 4.044 20 C -0.253 4.253 21 C -0.096 4.096 22 C -0.126 4.126 23 C -0.011 4.011 24 O -0.315 6.315 25 C 0.057 3.943 26 C -0.024 4.024 27 C -0.151 4.151 28 H 0.061 0.939 29 H 0.209 0.791 30 H 0.031 0.969 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.269 0.731 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.146 0.854 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.132 0.868 46 H 0.074 0.926 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.084 -22.285 11.017 25.374 hybrid contribution 0.354 1.500 -0.227 1.558 sum -4.730 -20.785 10.790 23.892 Atomic orbital electron populations 1.69785 1.06451 1.26154 1.59379 1.25519 0.96414 1.00923 1.03682 0.85245 0.77256 0.79343 0.78113 1.20525 1.22014 1.20526 1.19578 0.91414 0.85531 1.41408 0.91028 1.42547 1.05675 1.00984 1.89334 1.20803 0.93812 0.84921 0.97328 1.21218 0.97140 0.94101 0.97957 1.21836 0.97525 0.92518 1.03512 1.21757 0.92329 0.99826 0.86713 1.48123 1.46088 1.12876 1.25822 1.16866 0.79240 0.83878 0.81334 1.90799 1.50640 1.27206 1.74727 1.21219 1.09118 0.84944 0.99148 1.84454 1.56546 1.31961 1.33562 1.24699 0.95648 0.97375 0.86677 1.21307 1.07112 0.95283 1.01625 1.20565 0.97790 0.97250 0.94000 1.20921 1.03146 0.88606 0.99878 1.22762 0.85556 1.00527 0.92236 1.87954 1.33553 1.26170 1.83829 1.21310 1.02912 0.78491 0.91538 1.22446 0.94263 0.81650 1.04023 1.21822 0.97879 0.97888 0.97490 0.93944 0.79145 0.96864 0.96125 0.91039 0.91990 0.88737 0.88937 0.89688 0.73127 0.89955 0.89194 0.86231 0.91949 0.85437 0.89730 0.90083 0.86831 0.92593 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.35 13.06 21.65 0.28 -58.07 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 3 Si 0.97 45.85 29.55 68.60 2.03 47.88 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 9 N -0.74 -37.23 5.32 -343.45 -1.83 -39.06 16 10 C 0.16 6.22 5.65 86.38 0.49 6.71 16 11 C -0.09 -2.61 2.19 -10.77 -0.02 -2.64 16 12 C -0.12 -2.85 5.36 30.67 0.16 -2.69 16 13 C 0.12 2.72 6.41 86.37 0.55 3.27 16 14 N -0.60 -15.71 2.97 -822.79 -2.44 -18.15 16 15 C 0.60 17.17 7.65 86.44 0.66 17.83 16 16 O -0.55 -17.86 15.03 -4.33 -0.07 -17.92 16 17 C -0.09 -2.43 6.80 23.76 0.16 -2.27 16 18 O -0.17 -3.74 7.20 -14.56 -0.10 -3.85 16 19 C 0.02 0.37 12.06 66.83 0.81 1.18 16 20 C -0.25 -4.46 6.04 -20.12 -0.12 -4.58 16 21 C -0.09 -2.16 6.02 -19.84 -0.12 -2.28 16 22 C -0.09 -1.81 5.79 30.08 0.17 -1.63 16 23 C 0.07 1.01 6.75 72.21 0.49 1.50 16 24 O -0.40 -6.98 10.70 -148.98 -1.59 -8.58 16 25 C 0.13 1.73 7.27 71.25 0.52 2.24 16 26 C 0.10 2.48 6.35 86.51 0.55 3.03 16 27 C -0.11 -3.39 5.26 30.82 0.16 -3.23 16 28 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.38 19.76 6.84 -92.71 -0.63 19.12 16 30 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.09 2.21 7.04 -2.39 -0.02 2.20 16 36 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.25 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.09 1.97 7.52 -2.39 -0.02 1.95 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 0.85 8.08 -2.39 -0.02 0.83 16 42 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.11 2.80 3.81 -49.10 -0.19 2.61 16 46 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.07 2.32 7.15 -2.39 -0.02 2.30 16 Total: -1.00 -71.74 372.58 2.23 -69.51 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.18 Total: 28.46 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.77 Total: -0.22 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -3.98 Total: -115.28 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -1.76 Total: -30.35 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -71.74 2.23 -69.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205767412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.498 kcal (2) G-P(sol) polarization free energy of solvation -71.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 27.25 seconds