Wall clock time and date at job start Tue Mar 31 2020 20:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.46963 * 2 1 4 4 C 1.34225 * 116.99909 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00495 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00092 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47423 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.47040 * 54.99788 * 7 6 4 9 9 C 1.50695 * 109.47381 * 174.99536 * 7 6 4 10 10 H 1.08004 * 120.00546 * 240.27913 * 9 7 6 11 11 C 1.37885 * 119.99721 * 60.00164 * 9 7 6 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46986 * 90.00256 * 13 11 9 15 15 H 1.48496 * 109.47029 * 210.00273 * 13 11 9 16 16 H 1.48499 * 109.47352 * 330.00102 * 13 11 9 17 17 O 1.42895 * 109.47319 * 295.00034 * 7 6 4 18 18 C 1.42898 * 114.00373 * 149.99459 * 17 7 6 19 19 C 1.53001 * 109.47343 * 179.97438 * 18 17 7 20 20 C 1.50695 * 109.47276 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.11779 * 269.72868 * 20 19 18 22 22 C 1.37930 * 120.35467 * 179.97438 * 21 20 19 23 23 C 1.39285 * 120.23599 * 0.54226 * 22 21 20 24 24 C 1.38877 * 118.87909 * 359.41565 * 23 22 21 25 25 C 1.37745 * 120.78226 * 0.41940 * 24 23 22 26 26 C 1.51645 * 107.04307 * 180.67956 * 24 23 22 27 27 C 1.54713 * 101.91890 * 15.47334 * 26 24 23 28 28 O 1.36140 * 129.88163 * 179.09642 * 23 22 21 29 29 H 1.08997 * 109.47120 * 299.99876 * 1 2 3 30 30 H 1.09003 * 109.46964 * 59.99820 * 1 2 3 31 31 H 1.08996 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47120 * 240.00123 * 2 1 3 33 33 H 1.09003 * 109.46964 * 120.00180 * 2 1 3 34 34 H 1.08998 * 109.47556 * 59.99659 * 6 4 3 35 35 H 1.09005 * 109.46977 * 300.00296 * 6 4 3 36 36 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.47493 * 300.00278 * 18 17 7 38 38 H 1.09007 * 109.46790 * 60.00098 * 18 17 7 39 39 H 1.08998 * 109.47129 * 300.00593 * 19 18 17 40 40 H 1.08997 * 109.46884 * 60.00323 * 19 18 17 41 41 H 1.08003 * 119.82239 * 0.17074 * 21 20 19 42 42 H 1.07995 * 119.88145 * 180.27785 * 22 21 20 43 43 H 1.08006 * 120.00662 * 179.76703 * 25 24 23 44 44 H 1.08991 * 110.94255 * 133.62733 * 26 24 23 45 45 H 1.09000 * 110.94205 * 257.28614 * 26 24 23 46 46 H 1.08995 * 110.74639 * 93.01449 * 27 26 24 47 47 H 1.09000 * 110.75115 * 216.18896 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8574 0.0023 8 1 5.7813 2.2498 -0.8393 9 6 6.0244 4.2446 -0.1210 10 1 6.6562 4.4944 -0.9606 11 6 5.7400 5.1965 0.8351 12 7 4.9666 4.8938 1.8548 13 14 6.4543 6.9158 0.6826 14 1 5.5207 7.7729 -0.0915 15 1 6.6486 7.4930 2.0370 16 1 7.7614 6.8484 -0.0188 17 8 5.8936 2.2638 1.2236 18 6 7.1168 1.5348 1.1037 19 6 7.4956 0.9469 2.4645 20 6 8.7859 0.1787 2.3382 21 6 8.7638 -1.1688 2.0282 22 6 9.9419 -1.8765 1.9109 23 6 11.1647 -1.2417 2.1150 24 6 11.1742 0.1120 2.4248 25 6 9.9966 0.8176 2.5380 26 6 12.6262 0.5242 2.5714 27 6 13.3641 -0.6649 1.9117 28 8 12.4286 -1.7455 2.0669 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.5844 3.4694 0.8911 35 1 3.5850 3.4698 -0.8888 36 1 4.7669 5.5634 2.5276 37 1 6.9899 0.7283 0.3816 38 1 7.9072 2.2047 0.7650 39 1 7.6227 1.7537 3.1863 40 1 6.7054 0.2771 2.8036 41 1 7.8191 -1.6690 1.8740 42 1 9.9158 -2.9276 1.6641 43 1 10.0185 1.8692 2.7832 44 1 12.8240 1.4517 2.0343 45 1 12.9002 0.6187 3.6222 46 1 13.5520 -0.4653 0.8568 47 1 14.2961 -0.8792 2.4347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224516698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:08 Heat of formation + Delta-G solvation = -150.523090 kcal Electronic energy + Delta-G solvation = -28516.501575 eV Core-core repulsion = 24436.653830 eV Total energy + Delta-G solvation = -4079.847745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.02915 -39.65655 -37.90013 -36.72846 -35.62877 -33.30190 -32.67378 -31.89378 -31.51245 -29.93906 -29.21725 -27.48310 -26.02295 -23.60073 -23.15397 -22.55541 -21.80998 -21.53382 -20.33636 -19.69173 -17.34925 -17.10450 -16.65796 -16.49227 -16.16958 -16.06922 -15.53785 -15.12175 -14.84762 -14.37562 -14.11286 -13.98800 -13.64863 -13.40151 -13.24135 -13.19803 -12.96572 -12.76361 -12.66160 -12.32453 -12.18534 -11.85960 -11.80142 -11.48336 -11.27930 -11.23688 -10.99740 -10.94540 -10.89425 -10.70788 -10.61865 -10.48431 -10.22114 -10.06400 -9.75900 -9.48952 -9.12196 -8.77433 -8.61070 -7.90221 -7.84313 -6.06727 -4.24983 1.39474 1.48556 3.13916 3.23792 3.24366 3.32621 3.35079 3.43116 3.79135 4.35269 4.37131 4.52160 4.83912 4.90021 4.96489 5.12822 5.18609 5.20992 5.26972 5.28717 5.43694 5.47455 5.55062 5.56491 5.64163 5.69297 5.73887 5.81735 5.93921 6.00510 6.13316 6.18493 6.20983 6.33650 6.43699 6.47997 6.52543 6.61063 6.67075 6.73140 6.87865 6.98143 7.04178 7.11657 7.26367 7.52829 7.80469 8.15193 8.60274 8.68253 9.04544 9.51294 10.95018 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.003269 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.371584 B = 8562.670338 C =11243.106794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.369 6.369 4 C 0.459 3.541 5 O -0.516 6.516 6 C -0.102 4.102 7 C 0.234 3.766 8 H 0.013 0.987 9 C -0.559 4.559 10 H 0.059 0.941 11 C 0.087 3.913 12 N -0.858 5.858 13 Si 0.888 3.112 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.274 1.274 17 O -0.365 6.365 18 C 0.086 3.914 19 C -0.073 4.073 20 C -0.090 4.090 21 C -0.082 4.082 22 C -0.136 4.136 23 C 0.089 3.911 24 C -0.175 4.175 25 C -0.065 4.065 26 C -0.110 4.110 27 C 0.052 3.948 28 O -0.310 6.310 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.263 0.737 37 H 0.028 0.972 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.075 0.925 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.374 -9.578 0.618 11.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.287 6.287 4 C 0.304 3.696 5 O -0.404 6.404 6 C -0.140 4.140 7 C 0.177 3.823 8 H 0.031 0.969 9 C -0.596 4.596 10 H 0.078 0.922 11 C -0.120 4.120 12 N -0.494 5.494 13 Si 0.716 3.284 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.199 1.199 17 O -0.284 6.284 18 C 0.008 3.992 19 C -0.111 4.111 20 C -0.090 4.090 21 C -0.100 4.100 22 C -0.155 4.155 23 C 0.045 3.955 24 C -0.176 4.176 25 C -0.083 4.083 26 C -0.147 4.147 27 C -0.023 4.023 28 O -0.224 6.224 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.093 0.907 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.472 -10.033 0.972 11.470 hybrid contribution 0.616 0.950 -0.254 1.161 sum 6.088 -9.083 0.718 10.958 Atomic orbital electron populations 1.21776 0.93438 1.02228 1.03288 1.22822 0.94759 0.82045 1.01897 1.86592 1.26489 1.30754 1.84848 1.24995 0.79224 0.94464 0.70956 1.90550 1.60182 1.43683 1.45955 1.21914 0.97926 0.87656 1.06508 1.19279 0.87812 0.91840 0.83326 0.96914 1.21490 1.32595 0.95907 1.09653 0.92235 1.24984 0.94025 0.98375 0.94572 1.69889 1.34823 1.33820 1.10882 0.86674 0.79754 0.84510 0.77490 1.20441 1.21058 1.19871 1.87945 1.37153 1.68654 1.34639 1.21922 0.89366 0.93759 0.94115 1.20430 0.92603 0.98975 0.99071 1.19836 0.94945 0.93893 1.00363 1.20855 0.97326 0.93793 0.97979 1.20196 0.88897 1.00561 1.05805 1.19508 0.85745 0.92274 0.98005 1.20696 0.95264 0.94745 1.06858 1.20287 0.89995 0.99746 0.98232 1.21770 0.91087 0.99453 1.02370 1.23782 0.92531 0.84766 1.01217 1.86786 1.13384 1.33222 1.89021 0.91621 0.91769 0.90938 0.92025 0.91820 0.84506 0.88910 0.92711 0.95413 0.94616 0.90479 0.90852 0.85008 0.85724 0.85535 0.89086 0.89365 0.90713 0.87907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 10.29 37.16 0.38 -1.29 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.98 10.22 -39.25 -0.40 -7.38 16 4 C 0.46 9.97 7.84 36.01 0.28 10.25 16 5 O -0.52 -12.04 15.17 -24.05 -0.36 -12.40 16 6 C -0.10 -2.37 5.22 -27.88 -0.15 -2.51 16 7 C 0.23 5.88 1.82 -27.88 -0.05 5.83 16 8 H 0.01 0.32 7.60 -51.92 -0.39 -0.07 16 9 C -0.56 -14.80 8.90 -34.44 -0.31 -15.11 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.09 2.27 5.24 -17.82 -0.09 2.18 16 12 N -0.86 -23.13 10.93 55.43 0.61 -22.52 16 13 Si 0.89 20.22 29.54 -169.99 -5.02 15.19 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 17 O -0.36 -9.26 8.61 -49.66 -0.43 -9.69 16 18 C 0.09 1.87 5.72 37.16 0.21 2.08 16 19 C -0.07 -1.35 5.72 -27.88 -0.16 -1.51 16 20 C -0.09 -1.45 5.14 -104.57 -0.54 -1.99 16 21 C -0.08 -1.20 9.68 -39.68 -0.38 -1.59 16 22 C -0.14 -1.91 10.06 -39.30 -0.40 -2.30 16 23 C 0.09 1.29 7.04 -38.96 -0.27 1.02 16 24 C -0.17 -2.44 6.27 -104.10 -0.65 -3.10 16 25 C -0.06 -0.98 9.70 -39.72 -0.39 -1.37 16 26 C -0.11 -1.13 7.12 -26.52 -0.19 -1.32 16 27 C 0.05 0.50 8.01 38.06 0.30 0.80 16 28 O -0.31 -4.14 11.10 -20.19 -0.22 -4.37 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 34 H 0.14 3.44 6.22 -51.93 -0.32 3.12 16 35 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 37 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 40 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 41 H 0.13 1.78 8.06 -52.48 -0.42 1.35 16 42 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 44 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -30.72 394.76 -9.49 -40.21 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.44 Total: 3.80 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.16 Total: -8.80 kcal Atomic # 7 Polarization: -23.13 SS G_CDS: 0.61 Total: -22.52 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.42 Total: -33.83 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.72 -9.49 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224516698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.313 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds