Wall clock time and date at job start Tue Mar 31 2020 20:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45197 * 109.46963 * 2 1 4 4 C 1.34225 * 116.99909 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00495 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00092 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47423 * 179.97438 * 6 4 3 8 8 H 1.09008 * 109.47040 * 54.99788 * 7 6 4 9 9 C 1.50695 * 109.47381 * 174.99536 * 7 6 4 10 10 H 1.08004 * 120.00546 * 240.27913 * 9 7 6 11 11 C 1.37885 * 119.99721 * 60.00164 * 9 7 6 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.46986 * 90.00256 * 13 11 9 15 15 H 1.48496 * 109.47029 * 210.00273 * 13 11 9 16 16 H 1.48499 * 109.47352 * 330.00102 * 13 11 9 17 17 O 1.42895 * 109.47319 * 295.00034 * 7 6 4 18 18 C 1.42898 * 114.00373 * 149.99459 * 17 7 6 19 19 C 1.53001 * 109.47343 * 179.97438 * 18 17 7 20 20 C 1.50695 * 109.47276 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.11779 * 269.72868 * 20 19 18 22 22 C 1.37930 * 120.35467 * 179.97438 * 21 20 19 23 23 C 1.39285 * 120.23599 * 0.54226 * 22 21 20 24 24 C 1.38877 * 118.87909 * 359.41565 * 23 22 21 25 25 C 1.37745 * 120.78226 * 0.41940 * 24 23 22 26 26 C 1.51645 * 107.04307 * 180.67956 * 24 23 22 27 27 C 1.54713 * 101.91890 * 15.47334 * 26 24 23 28 28 O 1.36140 * 129.88163 * 179.09642 * 23 22 21 29 29 H 1.08997 * 109.47120 * 299.99876 * 1 2 3 30 30 H 1.09003 * 109.46964 * 59.99820 * 1 2 3 31 31 H 1.08996 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47120 * 240.00123 * 2 1 3 33 33 H 1.09003 * 109.46964 * 120.00180 * 2 1 3 34 34 H 1.08998 * 109.47556 * 59.99659 * 6 4 3 35 35 H 1.09005 * 109.46977 * 300.00296 * 6 4 3 36 36 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.47493 * 300.00278 * 18 17 7 38 38 H 1.09007 * 109.46790 * 60.00098 * 18 17 7 39 39 H 1.08998 * 109.47129 * 300.00593 * 19 18 17 40 40 H 1.08997 * 109.46884 * 60.00323 * 19 18 17 41 41 H 1.08003 * 119.82239 * 0.17074 * 21 20 19 42 42 H 1.07995 * 119.88145 * 180.27785 * 22 21 20 43 43 H 1.08006 * 120.00662 * 179.76703 * 25 24 23 44 44 H 1.08991 * 110.94255 * 133.62733 * 26 24 23 45 45 H 1.09000 * 110.94205 * 257.28614 * 26 24 23 46 46 H 1.08995 * 110.74639 * 93.01449 * 27 26 24 47 47 H 1.09000 * 110.75115 * 216.18896 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8574 0.0023 8 1 5.7813 2.2498 -0.8393 9 6 6.0244 4.2446 -0.1210 10 1 6.6562 4.4944 -0.9606 11 6 5.7400 5.1965 0.8351 12 7 4.9666 4.8938 1.8548 13 14 6.4543 6.9158 0.6826 14 1 5.5207 7.7729 -0.0915 15 1 6.6486 7.4930 2.0370 16 1 7.7614 6.8484 -0.0188 17 8 5.8936 2.2638 1.2236 18 6 7.1168 1.5348 1.1037 19 6 7.4956 0.9469 2.4645 20 6 8.7859 0.1787 2.3382 21 6 8.7638 -1.1688 2.0282 22 6 9.9419 -1.8765 1.9109 23 6 11.1647 -1.2417 2.1150 24 6 11.1742 0.1120 2.4248 25 6 9.9966 0.8176 2.5380 26 6 12.6262 0.5242 2.5714 27 6 13.3641 -0.6649 1.9117 28 8 12.4286 -1.7455 2.0669 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.5844 3.4694 0.8911 35 1 3.5850 3.4698 -0.8888 36 1 4.7669 5.5634 2.5276 37 1 6.9899 0.7283 0.3816 38 1 7.9072 2.2047 0.7650 39 1 7.6227 1.7537 3.1863 40 1 6.7054 0.2771 2.8036 41 1 7.8191 -1.6690 1.8740 42 1 9.9158 -2.9276 1.6641 43 1 10.0185 1.8692 2.7832 44 1 12.8240 1.4517 2.0343 45 1 12.9002 0.6187 3.6222 46 1 13.5520 -0.4653 0.8568 47 1 14.2961 -0.8792 2.4347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224516698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:58 Heat of formation + Delta-G solvation = -165.486986 kcal Electronic energy + Delta-G solvation = -28517.150459 eV Core-core repulsion = 24436.653830 eV Total energy + Delta-G solvation = -4080.496628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.166 amu Computer time = 10.53 seconds Orbital eigenvalues (eV) -42.03774 -41.32683 -39.19019 -38.39068 -37.29730 -35.10916 -33.71108 -33.43054 -32.74962 -31.63622 -30.20526 -28.86712 -27.96586 -24.80323 -24.43539 -23.87093 -23.19261 -22.85711 -21.69759 -21.35582 -18.91955 -18.35645 -18.31068 -17.71983 -17.64086 -17.25165 -17.11253 -16.76773 -16.37821 -16.07646 -15.63989 -15.11963 -15.07787 -14.97072 -14.56456 -14.23311 -14.13673 -14.04654 -13.87018 -13.63258 -13.46975 -13.26464 -12.92170 -12.87477 -12.77503 -12.67467 -12.57518 -12.46029 -12.39930 -12.31847 -12.24177 -11.79584 -11.58157 -11.52685 -11.45140 -11.29588 -11.06241 -10.60527 -9.89620 -9.79555 -9.02961 -8.07021 -6.33000 0.26772 0.33204 1.39394 1.44511 1.46780 1.55562 1.91068 2.29259 2.44294 2.65049 3.09421 3.40678 3.49928 3.68282 3.92106 4.03036 4.03444 4.05824 4.15149 4.17355 4.18617 4.34817 4.37795 4.41597 4.50366 4.55357 4.64254 4.64987 4.66507 4.75410 4.84615 4.87917 4.92841 4.95030 4.96849 5.09826 5.16844 5.17196 5.18996 5.28603 5.36309 5.47643 5.59232 5.61925 5.67927 5.78419 6.14513 6.19985 6.61590 6.95622 7.09594 7.47424 8.94090 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009082 B = 0.003269 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.371584 B = 8562.670338 C =11243.106794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.369 6.369 4 C 0.466 3.534 5 O -0.536 6.536 6 C -0.098 4.098 7 C 0.232 3.768 8 H 0.002 0.998 9 C -0.581 4.581 10 H 0.053 0.947 11 C 0.049 3.951 12 N -0.880 5.880 13 Si 0.950 3.050 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.274 1.274 17 O -0.385 6.385 18 C 0.088 3.912 19 C -0.059 4.059 20 C -0.108 4.108 21 C -0.086 4.086 22 C -0.140 4.140 23 C 0.083 3.917 24 C -0.182 4.182 25 C -0.076 4.076 26 C -0.108 4.108 27 C 0.048 3.952 28 O -0.322 6.322 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.265 0.735 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.145 0.855 43 H 0.127 0.873 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 -9.970 0.605 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.287 6.287 4 C 0.311 3.689 5 O -0.426 6.426 6 C -0.136 4.136 7 C 0.175 3.825 8 H 0.020 0.980 9 C -0.618 4.618 10 H 0.071 0.929 11 C -0.155 4.155 12 N -0.516 5.516 13 Si 0.775 3.225 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.199 1.199 17 O -0.304 6.304 18 C 0.011 3.989 19 C -0.096 4.096 20 C -0.109 4.109 21 C -0.103 4.103 22 C -0.159 4.159 23 C 0.038 3.962 24 C -0.183 4.183 25 C -0.094 4.094 26 C -0.145 4.145 27 C -0.026 4.026 28 O -0.236 6.236 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.145 0.855 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.103 0.897 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.204 -10.429 0.950 12.172 hybrid contribution 0.406 0.974 -0.270 1.089 sum 6.610 -9.455 0.680 11.557 Atomic orbital electron populations 1.21806 0.90054 1.04393 1.03621 1.23260 0.97371 0.79818 1.02046 1.86555 1.24517 1.33472 1.84148 1.24550 0.80179 0.93538 0.70633 1.90534 1.60971 1.44084 1.47017 1.21691 0.96907 0.88790 1.06185 1.19269 0.89061 0.91216 0.82932 0.98046 1.21678 1.33208 0.96930 1.09963 0.92856 1.25605 0.94177 1.01648 0.94081 1.70006 1.35402 1.34904 1.11298 0.85705 0.79042 0.80251 0.77459 1.19368 1.20816 1.19908 1.87908 1.38520 1.69083 1.34912 1.22009 0.87759 0.93004 0.96136 1.20234 0.93989 0.98699 0.96681 1.19677 0.94140 0.94476 1.02563 1.20953 0.98220 0.93325 0.97848 1.20420 0.88607 1.01536 1.05293 1.19747 0.86443 0.92533 0.97489 1.21065 0.96667 0.94781 1.05770 1.20356 0.90349 0.99974 0.98722 1.21901 0.88540 1.00390 1.03678 1.24119 0.92724 0.83345 1.02428 1.86774 1.13207 1.34834 1.88825 0.91582 0.91137 0.87806 0.91510 0.92163 0.86356 0.87658 0.92585 0.95838 0.95905 0.91390 0.90986 0.84215 0.83742 0.85490 0.87743 0.87906 0.89675 0.84692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 10.29 71.98 0.74 -2.09 16 2 C 0.05 1.40 6.19 71.98 0.45 1.85 16 3 O -0.37 -13.90 10.22 -51.37 -0.53 -14.42 16 4 C 0.47 20.56 7.84 71.24 0.56 21.12 16 5 O -0.54 -25.52 15.17 27.04 0.41 -25.11 16 6 C -0.10 -4.65 5.22 29.85 0.16 -4.49 16 7 C 0.23 12.06 1.82 29.85 0.05 12.11 16 8 H 0.00 0.08 7.60 -2.38 -0.02 0.06 16 9 C -0.58 -31.47 8.90 25.60 0.23 -31.24 16 10 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 11 C 0.05 2.60 5.24 84.66 0.44 3.05 16 12 N -0.88 -48.12 10.93 21.45 0.23 -47.88 16 13 Si 0.95 41.61 29.54 68.60 2.03 43.63 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 16 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 17 O -0.38 -20.28 8.61 -135.19 -1.16 -21.44 16 18 C 0.09 4.01 5.72 71.98 0.41 4.42 16 19 C -0.06 -2.24 5.72 29.85 0.17 -2.07 16 20 C -0.11 -3.56 5.14 -19.83 -0.10 -3.67 16 21 C -0.09 -2.53 9.68 22.21 0.21 -2.31 16 22 C -0.14 -3.81 10.06 22.45 0.23 -3.59 16 23 C 0.08 2.29 7.04 22.67 0.16 2.45 16 24 C -0.18 -4.91 6.27 -19.53 -0.12 -5.03 16 25 C -0.08 -2.33 9.70 22.18 0.22 -2.11 16 26 C -0.11 -1.99 7.12 30.73 0.22 -1.77 16 27 C 0.05 0.78 8.01 72.57 0.58 1.36 16 28 O -0.32 -7.94 11.10 -95.14 -1.06 -9.00 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.86 8.13 -2.39 -0.02 1.85 16 33 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 34 H 0.12 6.13 6.22 -2.39 -0.01 6.11 16 35 H 0.11 4.59 8.14 -2.38 -0.02 4.57 16 36 H 0.26 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.02 1.07 8.08 -2.39 -0.02 1.05 16 38 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.07 2.66 8.09 -2.39 -0.02 2.64 16 40 H 0.07 2.71 8.09 -2.39 -0.02 2.69 16 41 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 42 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 44 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.10 1.60 8.14 -2.39 -0.02 1.59 16 46 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -66.89 394.76 5.48 -61.42 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.95 Total: 24.82 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.60 Total: -12.01 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.23 Total: -47.88 kcal Atomic # 8 Polarization: -67.64 SS G_CDS: -2.34 Total: -69.98 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -66.89 5.48 -61.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224516698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.072 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.53 seconds